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Report for Sequence Feature Glyma11g02530

Feature Type:gene_model
Chromosome:Gm11
Start:1656118
stop:1658182
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma11g02530
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G01620AT Annotation by Michelle Graham. TAIR10: plasma membrane intrinsic protein 1C | chr1:225986-226960 REVERSE LENGTH=214 SoyBaseE_val: 1.00E-137ISS
GO:0006084GO-bp Annotation by Michelle Graham. GO Biological Process: acetyl-CoA metabolic process SoyBaseN/AISS
GO:0006810GO-bp Annotation by Michelle Graham. GO Biological Process: transport SoyBaseN/AISS
GO:0006826GO-bp Annotation by Michelle Graham. GO Biological Process: iron ion transport SoyBaseN/AISS
GO:0006833GO-bp Annotation by Michelle Graham. GO Biological Process: water transport SoyBaseN/AISS
GO:0009414GO-bp Annotation by Michelle Graham. GO Biological Process: response to water deprivation SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0010106GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to iron ion starvation SoyBaseN/AISS
GO:0016126GO-bp Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process SoyBaseN/AISS
GO:0016132GO-bp Annotation by Michelle Graham. GO Biological Process: brassinosteroid biosynthetic process SoyBaseN/AISS
GO:0055085GO-bp Annotation by Michelle Graham. GO Biological Process: transmembrane transport SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0016021GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane SoyBaseN/AISS
GO:0005215GO-mf Annotation by Michelle Graham. GO Molecular Function: transporter activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0015250GO-mf Annotation by Michelle Graham. GO Molecular Function: water channel activity SoyBaseN/AISS
KOG0223 KOG Aquaporin (major intrinsic protein family) JGI ISS
PTHR19139Panther AQUAPORIN TRANSPORTER JGI ISS
PTHR19139:SF55Panther SUBFAMILY NOT NAMED JGI ISS
PF00230PFAM Major intrinsic protein JGI ISS
UniRef100_C6TIC3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TIC3_SOYBN SoyBaseE_val: 9.00E-153ISS
UniRef100_G7KC21UniRef Annotation by Michelle Graham. Most informative UniRef hit: Aquaporin n=1 Tax=Medicago truncatula RepID=G7KC21_MEDTR SoyBaseE_val: 4.00E-143ISS

Expression Patterns of Glyma11g02530
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g02530 not represented in the dataset
Glyma11g02530 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g02530
ParalogEvidenceComments
Glyma01g42950 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g02530 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g023200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma11g02530
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma11g02530
>Glyma11g02530.4   sequence type=transcript   gene model=Glyma11g02530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAGAAACCAAACCACAAGTAAAAGAAAGAAGCTTTCTTGAGTTGAGTTAACAGCATGGAGAGGGAGGAAGATGTTAAGGTTGGAGCACAGAAATTCTCAGAGAGGCAAGCATTGGGGACAGGAGCTCAGGGTGACAAGGACTACAAGGAGGCACCACCAGCACCCTTGTTTGAGCCAGGGGAGTTAAAGTCATGGTCTTTTTACAGAGCTGGGATTGCAGAGTTTGTGGCCACATTCTTGTTCCTCTACATCACTGTCTTGACTGTCATGGGTGTCAACAGGGCACCCAACAAGTGCTCCTCTGTTGGCATTCAAGGAATTGCATGGGCTTTCGGTGGCATGATCTTTGCCCTCGTCGACTGCACTGCTGGAATATCAGGTGGGCACATAAATCCGGCAGTGACGTTCGGTTTGTTTCTGGCTAGGAAGCTGTCCCTGACAAGAGCGCTGTTCTACATTGTGATGCAGTGTCTTGGAGCTATCTGTGGTGCTGGTGTGGTGAAGGGGTTTGAGGGGAATGCCAGGTATGAGTTATTCAAAGGTGGAGCCAATTTTGTGAGTCATGGATACACCAAGGGTGATGGCCTTGGAGCCGAGATTGTTGGCACTTTTATTCTTGTTTACACTGTCTTCTCCGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTCCCGATTTTGGCTCCTCTTCCAATCGGGTTTGCTGTGTTTTTGGTCCACTTGGCAACCATTCCAATCACAGGAACTGGCATTAACCCAGCTAGGAGTCTTGGTGCTGCTATAATATACAACAGAGACCATGCTTGGGATGACCATGTATATACATGTCCTTTCACTTATGTGCCTCTTTGTTTTGCATGAAAGTGACTTTATTTAACTGTTTAATTTTAATTGTGGCTTACAGTGGATTTTCTGGGTTGGACCTTTCATTGGAGCTGCCCTTGCAGCTTTATATCACCAGATAGTGATCCGAGCAATTCCATTCAAGACAAGGGGTTAATCAATACTTCATCCATCTGTGTTTGAATTATCTTCAATCATGTGTCTATTTGCACAATTTATATGGAATATCTATTTGTTTAAATCCATCATGTCATGTGTGTAAATTACTACCTCCTTGTTTGTGAACTCGATAGGATGTGGAGATTTTTGCCTGCTTATGCCCCTTATGCCTAGTGCTTGTTAATTTTCTTTTGTTTTCCTTTTTATTACCCTCAAAAGCACATTACTCGGTATTTAATTTATGTTGAGGAGCAGAATATGTGGAAAACAAACAAACTTTAGCCTTAAAATTACAAGAAGCATCTCTTTTAG
Coding sequences of Glyma11g02530
>Glyma11g02530.3   sequence type=CDS   gene model=Glyma11g02530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGTCAACAGGGCACCCAACAAGTGCTCCTCTGTTGGCATTCAAGGAATTGCATGGGCTTTCGGTGGCATGATCTTTGCCCTCGTCGACTGCACTGCTGGAATATCAGGTGGGCACATAAATCCGGCAGTGACGTTCGGTTTGTTTCTGGCTAGGAAGCTGTCCCTGACAAGAGCGCTGTTCTACATTGTGATGCAGTGTCTTGGAGCTATCTGTGGTGCTGGTGTGGTGAAGGGGTTTGAGGGGAATGCCAGGTATGAGTTATTCAAAGGTGGAGCCAATTTTGTGAGTCATGGATACACCAAGGGTGATGGCCTTGGAGCCGAGATTGTTGGCACTTTTATTCTTGTTTACACTGTCTTCTCCGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTCCCGATTTTGGCTCCTCTTCCAATCGGGTTTGCTGTGTTTTTGGTCCACTTGGCAACCATTCCAATCACAGGAACTGGCATTAACCCAGCTAGGAGTCTTGGTGCTGCTATAATATACAACAGAGACCATGCTTGGGATGACCATTGGATTTTCTGGGTTGGACCTTTCATTGGAGCTGCCCTTGCAGCTTTATATCACCAGATAGTGATCCGAGCAATTCCATTCAAGACAAGGGGTTAA

>Glyma11g02530.4   sequence type=CDS   gene model=Glyma11g02530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGTCAACAGGGCACCCAACAAGTGCTCCTCTGTTGGCATTCAAGGAATTGCATGGGCTTTCGGTGGCATGATCTTTGCCCTCGTCGACTGCACTGCTGGAATATCAGGTGGGCACATAAATCCGGCAGTGACGTTCGGTTTGTTTCTGGCTAGGAAGCTGTCCCTGACAAGAGCGCTGTTCTACATTGTGATGCAGTGTCTTGGAGCTATCTGTGGTGCTGGTGTGGTGAAGGGGTTTGAGGGGAATGCCAGGTATGAGTTATTCAAAGGTGGAGCCAATTTTGTGAGTCATGGATACACCAAGGGTGATGGCCTTGGAGCCGAGATTGTTGGCACTTTTATTCTTGTTTACACTGTCTTCTCCGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTCCCGATTTTGGCTCCTCTTCCAATCGGGTTTGCTGTGTTTTTGGTCCACTTGGCAACCATTCCAATCACAGGAACTGGCATTAACCCAGCTAGGAGTCTTGGTGCTGCTATAATATACAACAGAGACCATGCTTGGGATGACCATGTATATACATGTCCTTTCACTTATGTGCCTCTTTGTTTTGCATGA
Predicted protein sequences of Glyma11g02530
>Glyma11g02530.3   sequence type=predicted peptide   gene model=Glyma11g02530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGVNRAPNKCSSVGIQGIAWAFGGMIFALVDCTAGISGGHINPAVTFGLFLARKLSLTRALFYIVMQCLGAICGAGVVKGFEGNARYELFKGGANFVSHGYTKGDGLGAEIVGTFILVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRDHAWDDHWIFWVGPFIGAALAALYHQIVIRAIPFKTRG*

>Glyma11g02530.4   sequence type=predicted peptide   gene model=Glyma11g02530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGVNRAPNKCSSVGIQGIAWAFGGMIFALVDCTAGISGGHINPAVTFGLFLARKLSLTRALFYIVMQCLGAICGAGVVKGFEGNARYELFKGGANFVSHGYTKGDGLGAEIVGTFILVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRDHAWDDHVYTCPFTYVPLCFA*






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