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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G25740 | AT | Annotation by Michelle Graham. TAIR10: RNA binding Plectin/S10 domain-containing protein | chr4:13107488-13108751 REVERSE LENGTH=177 | SoyBase | E_val: 2.00E-78 | ISS |
| GO:0006412 | GO-bp | Annotation by Michelle Graham. GO Biological Process: translation | SoyBase | N/A | ISS |
| GO:0009664 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plant-type cell wall organization | SoyBase | N/A | ISS |
| GO:0042545 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall modification | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0022626 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome | SoyBase | N/A | ISS |
| GO:0022627 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosolic small ribosomal subunit | SoyBase | N/A | ISS |
| GO:0003735 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome | SoyBase | N/A | ISS |
| KOG3344 | KOG | 40s ribosomal protein s10 | JGI | ISS | |
| PTHR12146 | Panther | 40S RIBOSOMAL PROTEIN S10 | JGI | ISS | |
| PF03501 | PFAM | Plectin/S10 domain | JGI | ISS | |
| UniRef100_B9RCG9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 40S ribosomal protein S10, putative n=1 Tax=Ricinus communis RepID=B9RCG9_RICCO | SoyBase | E_val: 8.00E-91 | ISS |
| UniRef100_I1JA95 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=3 Tax=Glycine max RepID=I1JA95_SOYBN | SoyBase | E_val: 2.00E-125 | ISS |
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Glyma11g02410 not represented in the dataset |
Glyma11g02410 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g43110 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g021700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g02410.2 sequence type=transcript gene model=Glyma11g02410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TGGGAAGAAAGCAGAATTAGGGTTTATATCGCGTATAGTGTGGTAGCAGCAGCTGAGCTTGTTTCCGTCGCCGCTTCACCCACCGTAGCAACCATGATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCAAAGCACCCAGAGATTGATGTGCCGAATCTGCAGGTGATAAAGCTGATGCAGAGCTTCAAATCCAGAGAGTATGTGAGGGAGACATTTGCGTGGATGCACTATTACTGGTTCCTCACCAACGATGGAATTGAGTTCCTCAGGACATACCTCAACCTTCCTTCCGAAATTGTCCCTGCCACTCTCAAGAAGCAGGCCAAGCCCGCGGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAGGGGCCCACCTCGCTTTGACGGAGAGAGGAGATTCGGTGGTGACCGTGATGGATACCGTGGAGGTCCACGCGGACCTGGTGGTGATTTCGGTGACAAGGGTGGAGCTCCTGCTGACTACAGGCCTTCTTTTGGGGTAAGCTTTTTGCAATATATCAATTAACATTATTTGCTATTATTCTATATCAATCAATATTATTGTGTTTCTATTTGTTTATTTATTGTTTGCTATTATTCTATATATGTTCAGTATCTTTTCTTCTACGATTGTGTGTGTTATTACTTTGCGCTCTAGTTTTGATTTGTTTCTATTTGTATATCTAGTTTTGATTACAAATTTGACTCTGCCCGTATTTTTCGTGTTTCTAATAACATTGGTATCTCTCCTTGAAAAATTACTATAATGTCTATATATCTTTTGTGGGTTCAAATGTGCATATTCTAGCATTCAAACGATGGGGTAAGGCATTTAATTGTGTTAATAAAATCAAGCTTAGAGCTGCACCTTTTGTTTTCAATTTGCCAACTGTAGTTATGTAGTTTTCTGTATCGGATTATGTTTCGTTGTTAGCTACATTTTTATGGTCTTCTTTATATTGTTAGGAAGGCGGGAGGGGTGTTGCACTGACTTTTTGTCCAAATAATGTTGACTGTAGTTGCAAGTTTATTTGGATGATTTAAACCCAAATTCTTCTTGTTTACGTAATGCTATTACTGTTTTCTCTTATATCTGTGAAGTAGCATTGTCCTGATTTTGATAACGAATTTGTAGAAGTTAGTTCTTGTGATGGCCTACTTTGACATGTCAAGTTTTCCTGATATGTATATGTTTTCACTCTGTTTGCAGGGTGGTCCTGGTGGAAGGCCTGGTTTTGGTCGTGGTTCCGGTGGTTATGGTGCACCAACTAGTTCAAACATTCCTTAAATATAATGTTATGTGCTCTAATTTTTGCAGTTTTGGCTGTCATTGGAGTTAATAGTAGTTGTTCCCCTCTCCCAATAGTTGCTCATCTGACAATTTACTTACTCGGTTATTTATGCAATGAATATTTTGAATTGAGTGTTTCTGTTATAATAGGTTGACAATATTGTTTCTGTTGGATGATTGATGGTTTAGAAAGTGAAAATTGGCTGGGAAAAAGCCTTTATTTTTATATCAAAAAGTAACTTTATTTCTGATGGTTTATATATTGTTGCGAATTTTTAAGACAATAAATTTAACATGTGACAATAATTCAGTTTAAGTTTCAAATATATTTTTA >Glyma11g02410.3 sequence type=transcript gene model=Glyma11g02410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TGGGAAGAAAGCAGAATTAGGGTTTATATCGCGTATAGTGTGGTAGCAGCAGCTGAGCTTGTTTCCGTCGCCGCTTCACCCACCGTAGCAACCATGATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGAAGGACTTCAATCTGGCAAAGCACCCAGAGATTGATGTGCCGAATCTGCAGGTGATAAAGCTGATGCAGAGCTTCAAATCCAGAGAGTATGTGAGGGAGACATTTGCGTGGATGCACTATTACTGGTTCCTCACCAACGATGGAATTGAGTTCCTCAGGACATACCTCAACCTTCCTTCCGAAATTGTCCCTGCCACTCTCAAGAAGCAGGCCAAGCCCGCGGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAGGGGCCCACCTCGCTTTGACGGAGAGAGGAGATTCGGTGGTGACCGTGATGGATACCGTGGAGGTCCACGCGGACCTGGTGGTGATTTCGGTGACAAGGGTGGAGCTCCTGCTGACTACAGGCCTTCTTTTGGGGGTGGTCCTGGTGGAAGGCCTGGTTTTGGTCGTGGTTCCGGTGGTTATGGTGCACCAACTAGTTCAAACATTCCTTAAATATAATGTTATGTGCTCTAATTTTTGCAGTTTTGGCTGTCATTGGAGTTAATAGTAGTTGTTCCCCTCTCCCAATAGTTGCTCATCTGACAATTTACTTACTCGGTTATTTATGCAATGAATATTTTGAATTGAGTGTTTCTGTTATAATAGGTTGACAATATTGTTTCTGTTGGATGATTGATGGTTTAGAAAGTGAAAATTGGCTGGGAAAAAGCCTTTATTTTTATATCAAAAAGTAACTTTATTTCTGATGGTTTATATATTGTTGCGAATTTTTAAGACAATAAATTTAACATGTGACAATAATTCAGTTTAAGTTTCAAATATATTTTTA
>Glyma11g02410.1 sequence type=CDS gene model=Glyma11g02410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCAAAGCACCCAGAGATTGATGTGCCGAATCTGCAGGTGATAAAGCTGATGCAGAGCTTCAAATCCAGAGAGTATGTGAGGGAGACATTTGCGTGGATGCACTATTACTGGTTCCTCACCAACGATGGAATTGAGTTCCTCAGGACATACCTCAACCTTCCTTCCGAAATTGTCCCTGCCACTCTCAAGAAGCAGGCCAAGCCCGCGGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAGGGGCCCACCTCGCTTTGACGGAGAGAGGAGATTCGGTGGTGACCGTGATGGATACCGTGGAGGTCCACGCGGACCTGGTGGTGATTTCGGTGACAAGGGTGGAGCTCCTGCTGACTACAGGCCTTCTTTTGGGGGTGGTCCTGGTGGAAGGCCTGGTTTTGGTCGTGGTTCCGGTGGTTATGGTGCACCAACTAGTTCAAACATTCCTTAA >Glyma11g02410.2 sequence type=CDS gene model=Glyma11g02410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCAAAGCACCCAGAGATTGATGTGCCGAATCTGCAGGTGATAAAGCTGATGCAGAGCTTCAAATCCAGAGAGTATGTGAGGGAGACATTTGCGTGGATGCACTATTACTGGTTCCTCACCAACGATGGAATTGAGTTCCTCAGGACATACCTCAACCTTCCTTCCGAAATTGTCCCTGCCACTCTCAAGAAGCAGGCCAAGCCCGCGGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAGGGGCCCACCTCGCTTTGACGGAGAGAGGAGATTCGGTGGTGACCGTGATGGATACCGTGGAGGTCCACGCGGACCTGGTGGTGATTTCGGTGACAAGGGTGGAGCTCCTGCTGACTACAGGCCTTCTTTTGGGGTAAGCTTTTTGCAATATATCAATTAA >Glyma11g02410.3 sequence type=CDS gene model=Glyma11g02410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAGAGCTTCAAATCCAGAGAGTATGTGAGGGAGACATTTGCGTGGATGCACTATTACTGGTTCCTCACCAACGATGGAATTGAGTTCCTCAGGACATACCTCAACCTTCCTTCCGAAATTGTCCCTGCCACTCTCAAGAAGCAGGCCAAGCCCGCGGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAGGGGCCCACCTCGCTTTGACGGAGAGAGGAGATTCGGTGGTGACCGTGATGGATACCGTGGAGGTCCACGCGGACCTGGTGGTGATTTCGGTGACAAGGGTGGAGCTCCTGCTGACTACAGGCCTTCTTTTGGGGGTGGTCCTGGTGGAAGGCCTGGTTTTGGTCGTGGTTCCGGTGGTTATGGTGCACCAACTAGTTCAAACATTCCTTAA
>Glyma11g02410.1 sequence type=predicted peptide gene model=Glyma11g02410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MIIPEKNRKEICKYLFQEGVCFAKKDFNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWFLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFDGERRFGGDRDGYRGGPRGPGGDFGDKGGAPADYRPSFGGGPGGRPGFGRGSGGYGAPTSSNIP* >Glyma11g02410.2 sequence type=predicted peptide gene model=Glyma11g02410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MIIPEKNRKEICKYLFQEGVCFAKKDFNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWFLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFDGERRFGGDRDGYRGGPRGPGGDFGDKGGAPADYRPSFGVSFLQYIN* >Glyma11g02410.3 sequence type=predicted peptide gene model=Glyma11g02410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQSFKSREYVRETFAWMHYYWFLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFDGERRFGGDRDGYRGGPRGPGGDFGDKGGAPADYRPSFGGGPGGRPGFGRGSGGYGAPTSSNIP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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