Glyma11g02390 - SoyBase

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Report for Sequence Feature Glyma11g02390

Feature Type:	gene_model
Chromosome:	Gm11
Start:	1517756
stop:	1520762
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g02390

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G11280	AT	Annotation by Michelle Graham. TAIR10: 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 \| chr4:6864168-6865922 FORWARD LENGTH=495	SoyBase	E_val: 0	ISS
GO:0006979	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to oxidative stress	SoyBase	N/A	ISS
GO:0009058	GO-bp	Annotation by Michelle Graham. GO Biological Process: biosynthetic process	SoyBase	N/A	ISS
GO:0009611	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to wounding	SoyBase	N/A	ISS
GO:0009612	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to mechanical stimulus	SoyBase	N/A	ISS
GO:0009693	GO-bp	Annotation by Michelle Graham. GO Biological Process: ethylene biosynthetic process	SoyBase	N/A	ISS
GO:0009723	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus	SoyBase	N/A	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0009753	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0042218	GO-bp	Annotation by Michelle Graham. GO Biological Process: 1-aminocyclopropane-1-carboxylate biosynthetic process	SoyBase	N/A	ISS
GO:0071281	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to iron ion	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0016740	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity	SoyBase	N/A	ISS
GO:0016847	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 1-aminocyclopropane-1-carboxylate synthase activity	SoyBase	N/A	ISS
GO:0030170	GO-mf	Annotation by Michelle Graham. GO Molecular Function: pyridoxal phosphate binding	SoyBase	N/A	ISS
GO:0042802	GO-mf	Annotation by Michelle Graham. GO Molecular Function: identical protein binding	SoyBase	N/A	ISS
KOG0256	KOG	1-aminocyclopropane-1-carboxylate synthase, and related proteins	JGI		ISS
PTHR11751	Panther	SUBGROUP I AMINOTRANSFERASE RELATED	JGI		ISS
PTHR11751:SF26	Panther	TRANSCRIPTION REGULATOR AMINOTRANSFERASE GNTR-RELATED	JGI		ISS
PF00155	PFAM	Aminotransferase class I and II	JGI		ISS
UniRef100_I1LGD4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1LGD4_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_P31531	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 1-aminocyclopropane-1-carboxylate synthase n=3 Tax=Glycine max RepID=1A1C_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g02390

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g02390 not represented in the dataset	Glyma11g02390 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma11g02390 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g021500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g02390

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma11g02390

Limit To All Plant Sequences

>Glyma11g02390.1   sequence type=CDS   gene model=Glyma11g02390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGCTAATGAGTGTGAACGAACCCCAATTACTGTCTAAGATTGCCACTGGCGATGGACATGGTGAGAACTCCCCATACTTTGATGGGTGGAAGGCTTATGAAGATGATCCCTTTCATCCCATAAAAAATCCTAATGGGGTAATCCAGATGGGTCTTGCAGAAAATCAGCTTGCTTCTGACTTGGTTCAAAATTGGTTAACGAACAAGCCTAGGGCATCCATTTGCACTCCTGAAGGAGTGCGTGATTTCAAGGCCATAGCTAATTTTCAGGACTACCATGGTCTGCCGAAATTCAGAAAAGCTGTGGCTAAATTCATGGCAAGAACGAGAGGAAATAGAGTCACATTCGACCCTGACCGTATTGTTATGAGCGGTGGAGCAACTGGAGCACATGAGGTCACTGCCTTTTGTTTGGCAGACCCCGGCGAGGCATTTTTGGTCCCCACTCCTTATTATGCTGGATTCGACAGGGATTTGAGGTGGAGAACGGGCGTTGAACTTGTTCCTGTTAAATGTGAAAGCTCAAATGATTTCAAGTTAACAAGGAAAGCGTTGCAAGAGGCGTACGAGAAAGGCAAAGAGAACAACATAAGAATAAAGGGCTTGCTAATTACCAACCCATCAAACCCGTTGGGAACCATCATGGACCGAGAAACTCTAAGAACAGTGGTGAGTTTCATCAATGAAAAACATATCCACCTAGTAAGCGACGAAATATACGCTGGTACAGTTTTTTGCCACCCAGGTTTCACGAGCATCGCGGAGGTAATAGAGGAAGACACAGACATCGAATGTGACCGCGACCTTATCCACATTGTTTATAGTCTTTCAAAGGACATGGGGTTCCCTGGGTTCAGAGTTGGCATCATATACTCTTACAACGACGCAGTGGTGAATTGCGCTCGCAAAATGTCTAGCTTTGGATTAGTGTCCACACAGACCCAATACCTTTTAGCATCAATGCTTTCTGATGATGAGTTTGTGGAACGGTTCCTTGAAGAGAGTGCAAAAAGGCTTGCGAAAAGGTATGGGGTTTTCTGTAGGGGACTTGCACAAGTTGGCATAAAGTGCTTGGCGAGCAACGCTGGTCTGTTTCTGTGGATGGACTTGCGTCGTCTTTTGAAGAAGCCAACTTTTGAGGCCGAAATGGAACTGTGGAAAGTGATCATTGAGCAAGTGAAGATCAACATCTCCCCTGGCTCTTCCTTTCATTGTTCTGAGCCAGGGTGGTTCAGGGTGTGCTATGCTAACATGGATGATAGAACCGTGGAAGTTTCTCTGGCGAGAATGCGCACCTTCGTGAATCAGAACACCGAAGCCAAGAAATCTTGCAGCCAGAGAAACTTGAGGCTGAGCTTCTCGTTCAGAAAGATGGATGAGTACTTGGTGTCACCTCACTCCCCTTTTCCTCAATCACCTCTTGTTAAAGCCTCCACTTGA

Predicted protein sequences of Glyma11g02390

Limit To All Plant Sequences

>Glyma11g02390.1   sequence type=predicted peptide   gene model=Glyma11g02390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MELMSVNEPQLLSKIATGDGHGENSPYFDGWKAYEDDPFHPIKNPNGVIQMGLAENQLASDLVQNWLTNKPRASICTPEGVRDFKAIANFQDYHGLPKFRKAVAKFMARTRGNRVTFDPDRIVMSGGATGAHEVTAFCLADPGEAFLVPTPYYAGFDRDLRWRTGVELVPVKCESSNDFKLTRKALQEAYEKGKENNIRIKGLLITNPSNPLGTIMDRETLRTVVSFINEKHIHLVSDEIYAGTVFCHPGFTSIAEVIEEDTDIECDRDLIHIVYSLSKDMGFPGFRVGIIYSYNDAVVNCARKMSSFGLVSTQTQYLLASMLSDDEFVERFLEESAKRLAKRYGVFCRGLAQVGIKCLASNAGLFLWMDLRRLLKKPTFEAEMELWKVIIEQVKINISPGSSFHCSEPGWFRVCYANMDDRTVEVSLARMRTFVNQNTEAKKSCSQRNLRLSFSFRKMDEYLVSPHSPFPQSPLVKAST*

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