|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT1G63970 | AT | Annotation by Michelle Graham. TAIR10: isoprenoid F | chr1:23738923-23740336 REVERSE LENGTH=231 | SoyBase | E_val: 2.00E-105 | ISS |
GO:0006098 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt | SoyBase | N/A | ISS |
GO:0006364 | GO-bp | Annotation by Michelle Graham. GO Biological Process: rRNA processing | SoyBase | N/A | ISS |
GO:0006636 | GO-bp | Annotation by Michelle Graham. GO Biological Process: unsaturated fatty acid biosynthetic process | SoyBase | N/A | ISS |
GO:0006655 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phosphatidylglycerol biosynthetic process | SoyBase | N/A | ISS |
GO:0006744 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ubiquinone biosynthetic process | SoyBase | N/A | ISS |
GO:0009073 | GO-bp | Annotation by Michelle Graham. GO Biological Process: aromatic amino acid family biosynthetic process | SoyBase | N/A | ISS |
GO:0009637 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to blue light | SoyBase | N/A | ISS |
GO:0009644 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to high light intensity | SoyBase | N/A | ISS |
GO:0009744 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus | SoyBase | N/A | ISS |
GO:0009965 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis | SoyBase | N/A | ISS |
GO:0010027 | GO-bp | Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization | SoyBase | N/A | ISS |
GO:0010114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to red light | SoyBase | N/A | ISS |
GO:0010155 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of proton transport | SoyBase | N/A | ISS |
GO:0010218 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to far red light | SoyBase | N/A | ISS |
GO:0015995 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chlorophyll biosynthetic process | SoyBase | N/A | ISS |
GO:0016114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: terpenoid biosynthetic process | SoyBase | N/A | ISS |
GO:0016117 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carotenoid biosynthetic process | SoyBase | N/A | ISS |
GO:0019288 | GO-bp | Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway | SoyBase | N/A | ISS |
GO:0019344 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process | SoyBase | N/A | ISS |
GO:0030154 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell differentiation | SoyBase | N/A | ISS |
GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
GO:0008685 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity | SoyBase | N/A | ISS |
PF02542 | PFAM | YgbB family | JGI | ISS | |
UniRef100_C6SZ46 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SZ46_SOYBN | SoyBase | E_val: 2.00E-162 | ISS |
UniRef100_G7KC04 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 2-C-methyl-D-erythritol 2 4-cyclodiphosphate synthase n=1 Tax=Medicago truncatula RepID=G7KC04_MEDTR | SoyBase | E_val: 1.00E-129 | ISS |
Glyma11g02380 not represented in the dataset |
Glyma11g02380 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma.11g021400 | Wm82.a2.v1 | IGC | As supplied by JGI |
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g02380.1 sequence type=CDS gene model=Glyma11g02380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAGCTTCTTCCTTTACAACATCTTCCATTCTCTTCCCATTCACAACTAGTTCTAAATCCCCTCCTTCTCAACTATTCCCCTCTTTTCCTTGCAAACATCATACCCTCCGTCTCAGACCCGTCTCAGTCTCAGCCGCTTCAACCCCAACCCCCTCCATCCAAGCCGACAAATCCCCGGTCTCCGCCACTCCCTCCAAGCTTCTCCCCTTTCGGATTGGTCACGGCTTTGACCTCCACCGATTGGAACCCGGTTATCCCCTAATCATCGGTGGAATCAACATTCCCCACGATAGAGGTTGCGAGGCTCATTCCGATGGTGACGTTCTGCTTCACTGCGTTGTTGATGCGATTCTAGGGGCGCTAGGTCTTCCTGATATTGGCCAGATTTTCCCCGATTCTGATCCTAAGTGGAAGGGTTGTGCCTCTTCCGTCTTCATCCATGAATCTGTGAGACTTATGCATGAGGCTGGTTATGAGATTGGGAATTTAGATGCTACATTGATACTTCAGAGGCCAAAACTAAGCCCACACAAGGATGCTATCAAGGCCAACTTATCTGCACTGCTTGGGGTGGACTCTTCTGTAGTAAATATCAAAGCAAAAACTCATGAAAAGGTAGACAGCCTTGGAGAAAATAGAAGTATAGCGGCTCACACAGTGGTTCTTCTAATGAAGAAATGA
>Glyma11g02380.1 sequence type=predicted peptide gene model=Glyma11g02380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAASSFTTSSILFPFTTSSKSPPSQLFPSFPCKHHTLRLRPVSVSAASTPTPSIQADKSPVSATPSKLLPFRIGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGCASSVFIHESVRLMHEAGYEIGNLDATLILQRPKLSPHKDAIKANLSALLGVDSSVVNIKAKTHEKVDSLGENRSIAAHTVVLLMKK*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||