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Report for Sequence Feature Glyma11g02370

Feature Type:gene_model
Chromosome:Gm11
Start:1503705
stop:1506734
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma11g02370
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G63990AT Annotation by Michelle Graham. TAIR10: sporulation 11-2 | chr1:23743323-23745351 REVERSE LENGTH=383 SoyBaseE_val: 0ISS
GO:0006259GO-bp Annotation by Michelle Graham. GO Biological Process: DNA metabolic process SoyBaseN/AISS
GO:0006265GO-bp Annotation by Michelle Graham. GO Biological Process: DNA topological change SoyBaseN/AISS
GO:0006302GO-bp Annotation by Michelle Graham. GO Biological Process: double-strand break repair SoyBaseN/AISS
GO:0006312GO-bp Annotation by Michelle Graham. GO Biological Process: mitotic recombination SoyBaseN/AISS
GO:0007059GO-bp Annotation by Michelle Graham. GO Biological Process: chromosome segregation SoyBaseN/AISS
GO:0007062GO-bp Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion SoyBaseN/AISS
GO:0007129GO-bp Annotation by Michelle Graham. GO Biological Process: synapsis SoyBaseN/AISS
GO:0007131GO-bp Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination SoyBaseN/AISS
GO:0007155GO-bp Annotation by Michelle Graham. GO Biological Process: cell adhesion SoyBaseN/AISS
GO:0009553GO-bp Annotation by Michelle Graham. GO Biological Process: embryo sac development SoyBaseN/AISS
GO:0009555GO-bp Annotation by Michelle Graham. GO Biological Process: pollen development SoyBaseN/AISS
GO:0010090GO-bp Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis SoyBaseN/AISS
GO:0010332GO-bp Annotation by Michelle Graham. GO Biological Process: response to gamma radiation SoyBaseN/AISS
GO:0032204GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of telomere maintenance SoyBaseN/AISS
GO:0032504GO-bp Annotation by Michelle Graham. GO Biological Process: multicellular organism reproduction SoyBaseN/AISS
GO:0033044GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of chromosome organization SoyBaseN/AISS
GO:0042138GO-bp Annotation by Michelle Graham. GO Biological Process: meiotic DNA double-strand break formation SoyBaseN/AISS
GO:0043247GO-bp Annotation by Michelle Graham. GO Biological Process: telomere maintenance in response to DNA damage SoyBaseN/AISS
GO:0045010GO-bp Annotation by Michelle Graham. GO Biological Process: actin nucleation SoyBaseN/AISS
GO:0045132GO-bp Annotation by Michelle Graham. GO Biological Process: meiotic chromosome segregation SoyBaseN/AISS
GO:0048316GO-bp Annotation by Michelle Graham. GO Biological Process: seed development SoyBaseN/AISS
GO:0048765GO-bp Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation SoyBaseN/AISS
GO:0051026GO-bp Annotation by Michelle Graham. GO Biological Process: chiasma assembly SoyBaseN/AISS
GO:0071555GO-bp Annotation by Michelle Graham. GO Biological Process: cell wall organization SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005694GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chromosome SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0003918GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA topoisomerase type II (ATP-hydrolyzing) activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
KOG2795 KOG Catalytic subunit of the meiotic double strand break transesterase JGI ISS
PTHR10848Panther MEIOTIC RECOMBINATION PROTEIN SPO11 JGI ISS
PF04406PFAM Type IIB DNA topoisomerase JGI ISS
UniRef100_G7KC02UniRef Annotation by Michelle Graham. Most informative UniRef hit: Meiotic recombination protein SPO11-2 n=1 Tax=Medicago truncatula RepID=G7KC02_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233C85CUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233C85C related cluster n=1 Tax=unknown RepID=UPI000233C85C SoyBaseE_val: 0ISS

Expression Patterns of Glyma11g02370
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g02370 not represented in the dataset
Glyma11g02370 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma11g02370 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g021300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma11g02370
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma11g02370
>Glyma11g02370.2   sequence type=transcript   gene model=Glyma11g02370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCTATATTTCTTTCCTCTAGAATGAGTGTCGTTTATGTGTGTAGTTCAAACTTAACCGACATGAACTGTGTTTGGCAGTACAAAGCCCTTTCTTATTAGAGCATTGCGCGCCAATTATACTTGAGTTACCGCGAATTCTATAGATTTCGCCTCCGATGGAAGATCTTCGGAATTTGACGCTAAAATTCTTCTCCGATCAAGAGCTTTGCTATGCTGATATCGTCCCTCTTGCTCAGGTCCGAGCCAGAATTGAAGTCTCTGTCCTCAATTTTCTCAAAATATTAAATGCCTCCAGCCCTGCCATCTCAGATTTGCCTTTGATTCAGAGAAAATATAGCAATAGTCGAGTGAATCATGGCCTGTTGACTGAACTATCACGTGTTTTTCTCTCCAATTCCGTATCGACGAGGTCTCTGATGAGACCTAACGCAGCAAAGGCTTTTGTTAGGGTGTGGAAGGTGATGGAGATGTGCTATCAGATATTGCTTCAGGAAAAGCGTGTCACTCAGAGGGAGCTCTTCTACAAGCTGCTGTGTGATTCGCCACACCTGTTTCCTTCTCAAACACATGTCAACAGGACAATCCAAGATCTTGTAGCATTGCTTCGGTGCAGCCGATTCAGTCTTGGAATTATGGCATCTAGTCGAGGACTTGTAGCTGGCCGTCTGATTTTGCAGGAACCGGGCAAAGAGGCTGTTGATTGCTCTTTATGCGGTTCTTCTGGATTTGCAATATCTGGTGACTTGAATTTGTTGGATAGTTTGGTTCTAAATGCAGATGCTCGGTACGTTATAATTGTGGAAAAGCATGCAATATTTCAACGGCTTACTGAGGATCGTTTTTTTCATCAAATTCCAAGCATTCTTATCACGGCTAAAGGTTACCCAGATATTGCCACAAGATTTCTTCTTTACCGAATCAGTAAAGCTTTTCCTGACTTGCCAATTCTAGCTTTGGTGGATTGGAATCCAGCTGGATTAGCTATTCTATGCACCTTCAAATTTGGAAGCATAGGAATGGGCCTAGAGGCATACCGATACGCTTGCAATGTCAAGTGGTTAGGACTGCGGGGGCATGATCTACCCTTGCTGCCGAACCAATCTTTCGTTCCATTGAAGCCAAAGGATCTGCAAATTGCTCAAAGCTTGATGTCCTCGGGAATCTTACAGGATAATTACAAGGAAGAAGTGGCCTTGATGGTTCAGAGCGGAAGGAGAGCTGAAATCGAGGCCCTATACTTTAATGGATATGATTATTTGGGGAAGTACATAGCTAAAAAAATTGTACAGTCCGATTATGTATAATTCATTTTTGATATATATGTTTAAAACCATAAAATACAAAGCTGAAGCAAATAGGTAGACTTTTCTGCATAATCATCAATAAAACGCATATGAAGTAGGGAACATGTTTTTCTCATAATTTTCCTTGTTTATTTAAGCTTCCAAATATTTAAATTATTTTATTCAAAACTAGACAGA

>Glyma11g02370.3   sequence type=transcript   gene model=Glyma11g02370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCTATATTTCTTTCCTCTAGAATGAGTGTCGTTTATGTGTGTAGTTCAAACTTAACCGACATGAACTGTGTTTGGCAGTACAAAGCCCTTTCTTATTAGAGCATTGCGCGCCAATTATACTTGAGTTACCGCGAATTCTATAGATTTCGCCTCCGATGGAAGATCTTCGGAATTTGACGCTAAAATTCTTCTCCGATCAAGAGCTTTGCTATGCTGATATCGTCCCTCTTGCTCAGGTCCGAGCCAGAATTGAAGTCTCTGTCCTCAATTTTCTCAAAATATTAAATGCCTCCAGCCCTGCCATCTCAGATTTGCCTTTGATTCAGAGAAAATATAGCAATAGTCGAGTGAATCATGGCCTGTTGACTGAACTATCACGTGTTTTTCTCTCCAATTCCGTATCGACGAGGTCTCTGATGAGACCTAACGCAGCAAAGGCTTTTGTTAGGGTGTGGAAGGTGATGGAGATGTGCTATCAGATATTGCTTCAGGAAAAGCGTGTCACTCAGAGGGAGCTCTTCTACAAGCTGCTGTGTGATTCGCCACACCTGTTTCCTTCTCAAACACATGTCAACAGGACAATCCAAGATCTTGTAGCATTGCTTCGGTGCAGCCGATTCAGTCTTGGAATTATGGCATCTAGTCGAGGACTTGTAGCTGGCCGTCTGATTTTGCAGGAACCGGGCAAAGAGGCTGTTGATTGCTCTTTATGCGGTTCTTCTGGATTTGCAATATCTGGTGACTTGAATTTGTTGGATAGTTTGGTTCTAAATGCAGATGCTCGGTACGTTATAATTGTGGAAAAGCATGCAATATTTCAACGGCTTACTGAGGATCGTTTTTTTCATCAAATTCCAAGCATTCTTATCACGGCTAAAGGTTACCCAGATATTGCCACAAGATTTCTTCTTTACCGAATCAGTAAAGCTTTTCCTGACTTGCCAATTCTAGCTTTGGTGGATTGGAATCCAGCTGGATTAGCTATTCTATGCACCTTCAAATTTGGAAGCATAGGAATGGGCCTAGAGGCATACCGATACGGTAGTTTTATAATCACATTATACCACAAAGTATACAAACTCTAATATGTTGGAAACAAACTTGAGAAATGCTATGCATTATCTAGCTTGCAATGTCAAGTGGTTAGGACTGCGGGGGCATGATCTACCCTTGCTGCCGAACCAATCTTTCGTTCCATTGAAGCCAAAGGATCTGCAAATTGCTCAAAGCTTGATGTCCTCGGGAATCTTACAGGATAATTACAAGGAAGAAGTGGCCTTGATGGTTCAGAGCGGAAGGAGAGCTGAAATCGAGGCCCTATACTTTAATGGATATGATTATTTGGGGAAGTACATAGCTAAAAAAATTGTACAGTCCGATTATGTATAATTCATTTTTGATATATATGTTTAAAACCATAAAATACAAAGCTGAAGCAAATAGGTAGACTTTTCTGCATAATCATCAATAAAACGCATATGAAGTAGGGAACATGTTTTTCTCATAATTTTCCTTGTTTATTTAAGCTTCCAAATATTTAAATTATTTTATTCAAAACTAGACAGAGTATTTTTCTATGCATTTTCAAATTTTACAAAATATTAGAGT
Coding sequences of Glyma11g02370
>Glyma11g02370.1   sequence type=CDS   gene model=Glyma11g02370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGATCTTCGGAATTTGACGCTAAAATTCTTCTCCGATCAAGAGCTTTGCTATGCTGATATCGTCCCTCTTGCTCAGGTCCGAGCCAGAATTGAAGTCTCTGTCCTCAATTTTCTCAAAATATTAAATGCCTCCAGCCCTGCCATCTCAGATTTGCCTTTGATTCAGAGAAAATATAGCAATAGTCGAGTGAATCATGGCCTGTTGACTGAACTATCACGTGTTTTTCTCTCCAATTCCGTATCGACGAGGTCTCTGATGAGACCTAACGCAGCAAAGGCTTTTGTTAGGGTGTGGAAGGTGATGGAGATGTGCTATCAGATATTGCTTCAGGAAAAGCGTGTCACTCAGAGGGAGCTCTTCTACAAGCTGCTGTGTGATTCGCCACACCTGTTTCCTTCTCAAACACATGTCAACAGGACAATCCAAGATCTTGTAGCATTGCTTCGGTGCAGCCGATTCAGTCTTGGAATTATGGCATCTAGTCGAGGACTTGTAGCTGGCCGTCTGATTTTGCAGGAACCGGGCAAAGAGGCTGTTGATTGCTCTTTATGCGGTTCTTCTGGATTTGCAATATCTGGTGACTTGAATTTGTTGGATAGTTTGGTTCTAAATGCAGATGCTCGGTACGTTATAATTGTGGAAAAGCATGCAATATTTCAACGGCTTACTGAGGATCGTTTTTTTCATCAAATTCCAAGCATTCTTATCACGGCTAAAGGTTACCCAGATATTGCCACAAGGAATCCAGCTGGATTAGCTATTCTATGCACCTTCAAATTTGGAAGCATAGGAATGGGCCTAGAGGCATACCGATACGCTTGCAATGTCAAGTGGTTAGGACTGCGGGGGCATGATCTACCCTTGCTGCCGAACCAATCTTTCGTTCCATTGAAGCCAAAGGATCTGCAAATTGCTCAAAGCTTGATGTCCTCGGGAATCTTACAGGATAATTACAAGGAAGAAGTGGCCTTGATGGTTCAGAGCGGAAGGAGAGCTGAAATCGAGGCCCTATACTTTAATGGATATGATTATTTGGGGAAGTACATAGCTAAAAAAATTGTACAGTCCGATTATGTATAA

>Glyma11g02370.2   sequence type=CDS   gene model=Glyma11g02370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGATCTTCGGAATTTGACGCTAAAATTCTTCTCCGATCAAGAGCTTTGCTATGCTGATATCGTCCCTCTTGCTCAGGTCCGAGCCAGAATTGAAGTCTCTGTCCTCAATTTTCTCAAAATATTAAATGCCTCCAGCCCTGCCATCTCAGATTTGCCTTTGATTCAGAGAAAATATAGCAATAGTCGAGTGAATCATGGCCTGTTGACTGAACTATCACGTGTTTTTCTCTCCAATTCCGTATCGACGAGGTCTCTGATGAGACCTAACGCAGCAAAGGCTTTTGTTAGGGTGTGGAAGGTGATGGAGATGTGCTATCAGATATTGCTTCAGGAAAAGCGTGTCACTCAGAGGGAGCTCTTCTACAAGCTGCTGTGTGATTCGCCACACCTGTTTCCTTCTCAAACACATGTCAACAGGACAATCCAAGATCTTGTAGCATTGCTTCGGTGCAGCCGATTCAGTCTTGGAATTATGGCATCTAGTCGAGGACTTGTAGCTGGCCGTCTGATTTTGCAGGAACCGGGCAAAGAGGCTGTTGATTGCTCTTTATGCGGTTCTTCTGGATTTGCAATATCTGGTGACTTGAATTTGTTGGATAGTTTGGTTCTAAATGCAGATGCTCGGTACGTTATAATTGTGGAAAAGCATGCAATATTTCAACGGCTTACTGAGGATCGTTTTTTTCATCAAATTCCAAGCATTCTTATCACGGCTAAAGGTTACCCAGATATTGCCACAAGATTTCTTCTTTACCGAATCAGTAAAGCTTTTCCTGACTTGCCAATTCTAGCTTTGGTGGATTGGAATCCAGCTGGATTAGCTATTCTATGCACCTTCAAATTTGGAAGCATAGGAATGGGCCTAGAGGCATACCGATACGCTTGCAATGTCAAGTGGTTAGGACTGCGGGGGCATGATCTACCCTTGCTGCCGAACCAATCTTTCGTTCCATTGAAGCCAAAGGATCTGCAAATTGCTCAAAGCTTGATGTCCTCGGGAATCTTACAGGATAATTACAAGGAAGAAGTGGCCTTGATGGTTCAGAGCGGAAGGAGAGCTGAAATCGAGGCCCTATACTTTAATGGATATGATTATTTGGGGAAGTACATAGCTAAAAAAATTGTACAGTCCGATTATGTATAA

>Glyma11g02370.3   sequence type=CDS   gene model=Glyma11g02370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGATCTTCGGAATTTGACGCTAAAATTCTTCTCCGATCAAGAGCTTTGCTATGCTGATATCGTCCCTCTTGCTCAGGTCCGAGCCAGAATTGAAGTCTCTGTCCTCAATTTTCTCAAAATATTAAATGCCTCCAGCCCTGCCATCTCAGATTTGCCTTTGATTCAGAGAAAATATAGCAATAGTCGAGTGAATCATGGCCTGTTGACTGAACTATCACGTGTTTTTCTCTCCAATTCCGTATCGACGAGGTCTCTGATGAGACCTAACGCAGCAAAGGCTTTTGTTAGGGTGTGGAAGGTGATGGAGATGTGCTATCAGATATTGCTTCAGGAAAAGCGTGTCACTCAGAGGGAGCTCTTCTACAAGCTGCTGTGTGATTCGCCACACCTGTTTCCTTCTCAAACACATGTCAACAGGACAATCCAAGATCTTGTAGCATTGCTTCGGTGCAGCCGATTCAGTCTTGGAATTATGGCATCTAGTCGAGGACTTGTAGCTGGCCGTCTGATTTTGCAGGAACCGGGCAAAGAGGCTGTTGATTGCTCTTTATGCGGTTCTTCTGGATTTGCAATATCTGGTGACTTGAATTTGTTGGATAGTTTGGTTCTAAATGCAGATGCTCGGTACGTTATAATTGTGGAAAAGCATGCAATATTTCAACGGCTTACTGAGGATCGTTTTTTTCATCAAATTCCAAGCATTCTTATCACGGCTAAAGGTTACCCAGATATTGCCACAAGATTTCTTCTTTACCGAATCAGTAAAGCTTTTCCTGACTTGCCAATTCTAGCTTTGGTGGATTGGAATCCAGCTGGATTAGCTATTCTATGCACCTTCAAATTTGGAAGCATAGGAATGGGCCTAGAGGCATACCGATACGGTAGTTTTATAATCACATTATACCACAAAGTATACAAACTCTAA
Predicted protein sequences of Glyma11g02370
>Glyma11g02370.1   sequence type=predicted peptide   gene model=Glyma11g02370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEDLRNLTLKFFSDQELCYADIVPLAQVRARIEVSVLNFLKILNASSPAISDLPLIQRKYSNSRVNHGLLTELSRVFLSNSVSTRSLMRPNAAKAFVRVWKVMEMCYQILLQEKRVTQRELFYKLLCDSPHLFPSQTHVNRTIQDLVALLRCSRFSLGIMASSRGLVAGRLILQEPGKEAVDCSLCGSSGFAISGDLNLLDSLVLNADARYVIIVEKHAIFQRLTEDRFFHQIPSILITAKGYPDIATRNPAGLAILCTFKFGSIGMGLEAYRYACNVKWLGLRGHDLPLLPNQSFVPLKPKDLQIAQSLMSSGILQDNYKEEVALMVQSGRRAEIEALYFNGYDYLGKYIAKKIVQSDYV*

>Glyma11g02370.2   sequence type=predicted peptide   gene model=Glyma11g02370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEDLRNLTLKFFSDQELCYADIVPLAQVRARIEVSVLNFLKILNASSPAISDLPLIQRKYSNSRVNHGLLTELSRVFLSNSVSTRSLMRPNAAKAFVRVWKVMEMCYQILLQEKRVTQRELFYKLLCDSPHLFPSQTHVNRTIQDLVALLRCSRFSLGIMASSRGLVAGRLILQEPGKEAVDCSLCGSSGFAISGDLNLLDSLVLNADARYVIIVEKHAIFQRLTEDRFFHQIPSILITAKGYPDIATRFLLYRISKAFPDLPILALVDWNPAGLAILCTFKFGSIGMGLEAYRYACNVKWLGLRGHDLPLLPNQSFVPLKPKDLQIAQSLMSSGILQDNYKEEVALMVQSGRRAEIEALYFNGYDYLGKYIAKKIVQSDYV*

>Glyma11g02370.3   sequence type=predicted peptide   gene model=Glyma11g02370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEDLRNLTLKFFSDQELCYADIVPLAQVRARIEVSVLNFLKILNASSPAISDLPLIQRKYSNSRVNHGLLTELSRVFLSNSVSTRSLMRPNAAKAFVRVWKVMEMCYQILLQEKRVTQRELFYKLLCDSPHLFPSQTHVNRTIQDLVALLRCSRFSLGIMASSRGLVAGRLILQEPGKEAVDCSLCGSSGFAISGDLNLLDSLVLNADARYVIIVEKHAIFQRLTEDRFFHQIPSILITAKGYPDIATRFLLYRISKAFPDLPILALVDWNPAGLAILCTFKFGSIGMGLEAYRYGSFIITLYHKVYKL*






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