SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G64150 | AT | Annotation by Michelle Graham. TAIR10: Uncharacterized protein family (UPF0016) | chr1:23809047-23812579 REVERSE LENGTH=370 | SoyBase | E_val: 5.00E-53 | ISS |
| GO:0042631 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to water deprivation | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| KOG2881 | KOG | Predicted membrane protein | JGI | ISS | |
| PTHR12608 | Panther | TRANSMEMBRANE PROTEIN HTP-1 RELATED | JGI | ISS | |
| PF01169 | PFAM | Uncharacterized protein family UPF0016 | JGI | ISS | |
| PF03018 | PFAM | Dirigent-like protein | JGI | ISS | |
| UniRef100_G7KAQ7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Transmembrane protein n=1 Tax=Medicago truncatula RepID=G7KAQ7_MEDTR | SoyBase | E_val: 2.00E-54 | ISS |
| UniRef100_UPI000233C858 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233C858 related cluster n=1 Tax=unknown RepID=UPI000233C858 | SoyBase | E_val: 1.00E-79 | ISS |
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Glyma11g02235 not represented in the dataset |
Glyma11g02235 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g43270 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g02235.1 sequence type=CDS gene model=Glyma11g02235 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCACAAGGGTACCATAAACTTTGCTGGTGCTGATCCTTTGATGAACAATACCAGAGACATTTCGGTTATTGGTGGGACTGGTGACTTTTTCATGGCAAGGGGAGTGGCCACTCTGAGCACGGATGCTTTTTCATGGCACGGGGCTTATCCAAGGCAGGAGCAGAGGAAGGAAGCGTTTCTGCTAATATTTTTCTCTGAACTGGGAGACAAGACCTTTTTCATTGCAGTGTACTTTGGGGTCTCTACCCTGCTGGATGCCTCATCCAGTGATAGCCAAAAATCCGATGAAGAGCAGAAGGAGATAATATTTGAGCTAGCAGTTTCCGATTTTTCTGGAAATGGGGCTGGGATACTATCAGCTGCCAGCACAGTTGCCAGTACTTTTCTCTTGGTTTTTGTTGCTGAATGGGGCGATAAGTCATTTTTCTCCACAATTGCCCTAGCAGCAGCTTCTTCTCCCCTTGGAGTCATAGCTGGAGCACTGGCCGGTCATGGTGTTGCAACTTTGCTAGCTGTACTTGGGGGTTCTTTACTTGGGACGTATTTGTCAGAGAAGGTTATTGCCTACATCGGAGGTGTTCTCTTTCTCGTCTTTGCGGCAATAACCTTATTTGAAATTGTGCAATAG
>Glyma11g02235.1 sequence type=predicted peptide gene model=Glyma11g02235 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MHKGTINFAGADPLMNNTRDISVIGGTGDFFMARGVATLSTDAFSWHGAYPRQEQRKEAFLLIFFSELGDKTFFIAVYFGVSTLLDASSSDSQKSDEEQKEIIFELAVSDFSGNGAGILSAASTVASTFLLVFVAEWGDKSFFSTIALAAASSPLGVIAGALAGHGVATLLAVLGGSLLGTYLSEKVIAYIGGVLFLVFAAITLFEIVQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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