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Report for Sequence Feature Glyma11g02160

Feature Type:gene_model
Chromosome:Gm11
Start:1344105
stop:1346152
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G23730AT Annotation by Michelle Graham. TAIR10: Galactose mutarotase-like superfamily protein | chr4:12362955-12364792 FORWARD LENGTH=306 SoyBaseE_val: 5.00E-70ISS
GO:0005975GO-bp Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process SoyBaseN/AISS
GO:0006012GO-bp Annotation by Michelle Graham. GO Biological Process: galactose metabolic process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0004034GO-mf Annotation by Michelle Graham. GO Molecular Function: aldose 1-epimerase activity SoyBaseN/AISS
GO:0016853GO-mf Annotation by Michelle Graham. GO Molecular Function: isomerase activity SoyBaseN/AISS
GO:0030246GO-mf Annotation by Michelle Graham. GO Molecular Function: carbohydrate binding SoyBaseN/AISS
PTHR11122Panther APOSPORY-ASSOCIATED PROTEIN C-RELATED JGI ISS
PF01263PFAM Aldose 1-epimerase JGI ISS
UniRef100_G7KAP1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Apospory-associated protein C n=1 Tax=Medicago truncatula RepID=G7KAP1_MEDTR SoyBaseE_val: 9.00E-75ISS
UniRef100_I1LGA8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LGA8_SOYBN SoyBaseE_val: 9.00E-146ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g02160 not represented in the dataset

Glyma11g02160 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma01g43321 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g019200 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma11g02160.2   sequence type=CDS   gene model=Glyma11g02160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGACAACTTCTGGAGGAGGAGGAGGAGTAGGAGCAGCAGAAAGTGATAACAGAACTGCCACCGTGGGAATTGAATTTACCAAAGACAAGAATGGAATATCCCTACTCGTTCTTCGAAACCACCGTGGAGCTTCAGCAACTGTTAGTTTGCACGGAGGCCAGGTTCTTTCCTGGAAAACAGAACTTGGTGAGGAGTTACTCTTCATAAGTAACAAGGGTCTCTTTGGCAACAGATGGCAATCTAACTTGACATCTCGCATCAGGAATGTCAATGGCAAGAATTTCAGTTTTTCCATGGCCTATCATACATATTTCTCCATTTCAGATATAATATATAAATATATTGTATGTAGTGAAGTGAGGGTAGAAGGGTTGGAAACTCTTGACTACCTGGACAACCTGTACCAGAGAGAACGCTTCACAGAACAAGGAGATTCTCTGACATTTGAATCAGAGGTAGACCGGGTCTATTTTGATTCTAGCAATATTGTAATTGTTCTAGACCATGAAAAGAAGAGAACATTTGTGATACGAAAGGAAGGACTTCCGGATGTTGTTGTTTGGAATCCTTGGGAAAGAAAATCCAAGTCCATATTAGATTTAGGGGATGAAGAGTACAAACAGATGCTATGTGTTGATGGTGCAGCAGTTGAAAAACCAAATCACCTTGTGGCCAGGTGA

>Glyma11g02160.2   sequence type=predicted peptide   gene model=Glyma11g02160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKTTSGGGGGVGAAESDNRTATVGIEFTKDKNGISLLVLRNHRGASATVSLHGGQVLSWKTELGEELLFISNKGLFGNRWQSNLTSRIRNVNGKNFSFSMAYHTYFSISDIIYKYIVCSEVRVEGLETLDYLDNLYQRERFTEQGDSLTFESEVDRVYFDSSNIVIVLDHEKKRTFVIRKEGLPDVVVWNPWERKSKSILDLGDEEYKQMLCVDGAAVEKPNHLVAR*







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