SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G46330 | AT | Annotation by Michelle Graham. TAIR10: arabinogalactan protein 16 | chr2:19018730-19019108 REVERSE LENGTH=73 | SoyBase | E_val: 3.00E-17 | ISS |
| GO:0006569 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tryptophan catabolic process | SoyBase | N/A | ISS |
| GO:0009684 | GO-bp | Annotation by Michelle Graham. GO Biological Process: indoleacetic acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0031225 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: anchored to membrane | SoyBase | N/A | ISS |
| PF06376 | PFAM | Protein of unknown function (DUF1070) | JGI | ISS | |
| UniRef100_C6SV73 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SV73_SOYBN | SoyBase | E_val: 1.00E-41 | ISS |
| UniRef100_D7MSV9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: AGP22/ATAGP22 n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7MSV9_ARALL | SoyBase | E_val: 1.00E-16 | ISS |
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Glyma11g02130 not represented in the dataset |
Glyma11g02130 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g018900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g02130.2 sequence type=transcript gene model=Glyma11g02130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTTGATCGGTTGCCTATATCCACTTTTGCTTCCCCTTCGTAACGGCCTATTAAACCCGTGCGCCGTCTCACACCAGTGTTCCCACTCCTCCAATTACTGCATTTGAGAGAGAGAGAGCAAAAAGATGGCTAGTTTCAGATTTTCATTCGGTTTCGGAGTGGTGGCCGCCGTTGTTCTCTCTCTCATCTTCACTCTTTACATGCCTGTCGCTGTTCATGCCCAATCCCTAGCTCCAGCACCTGCTCCTACCAGCGACGATCAAGGGATTGCGTATGTTTTGATGATGTTGGCTTTGGCACTCACTTATCTCATCCACTCCTCCACCTTCTGAAAAGGACGCTCTTTCACTTGAAAGAAGGTCTTATGTTTATTATTATTGATACAACTATTAGCGTTAGGAATCATAGATATAATAGACAACGTTATTCCCGAAATACTAATGACTGGGAAAAAATTTCCCATAGGAATTCGACCTTGTTTTTTCGGATTCATTTTCCCAGTGATGTAAGGGTATTTGTTTTTTACTGGCTTCTTAATGTCATTTTCTATTTGCTGATGCCATTCTAATTTGTACATTCTTGTCATTGTTTAATTTCTTTTTGGGAATAATAGCTAATTTGCTTC
>Glyma11g02130.1 sequence type=CDS gene model=Glyma11g02130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTAGTTTCAGATTTTCATTCGGTTTCGGAGTGGTGGCCGCCGTTGTTCTCTCTCTCATCTTCACTCTTTACATGCCTGTCGCTGTTCATGCCCAATCCCTAGCTCCAGCACCTGCTCCTACCAGCGACGGAACGTCCATAGATCAAGGGATTGCGTATGTTTTGATGATGTTGGCTTTGGCACTCACTTATCTCATCCACTCCTCCACCTTCTGA >Glyma11g02130.2 sequence type=CDS gene model=Glyma11g02130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTAGTTTCAGATTTTCATTCGGTTTCGGAGTGGTGGCCGCCGTTGTTCTCTCTCTCATCTTCACTCTTTACATGCCTGTCGCTGTTCATGCCCAATCCCTAGCTCCAGCACCTGCTCCTACCAGCGACGATCAAGGGATTGCGTATGTTTTGATGATGTTGGCTTTGGCACTCACTTATCTCATCCACTCCTCCACCTTCTGA
>Glyma11g02130.1 sequence type=predicted peptide gene model=Glyma11g02130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASFRFSFGFGVVAAVVLSLIFTLYMPVAVHAQSLAPAPAPTSDGTSIDQGIAYVLMMLALALTYLIHSSTF* >Glyma11g02130.2 sequence type=predicted peptide gene model=Glyma11g02130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASFRFSFGFGVVAAVVLSLIFTLYMPVAVHAQSLAPAPAPTSDDQGIAYVLMMLALALTYLIHSSTF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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