SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G64350 | AT | Annotation by Michelle Graham. TAIR10: Transducin/WD40 repeat-like superfamily protein | chr1:23881582-23883073 FORWARD LENGTH=326 | SoyBase | E_val: 4.00E-167 | ISS |
| GO:0006626 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to mitochondrion | SoyBase | N/A | ISS |
| GO:0006635 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation | SoyBase | N/A | ISS |
| GO:0043161 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteasomal ubiquitin-dependent protein catabolic process | SoyBase | N/A | ISS |
| GO:0043248 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteasome assembly | SoyBase | N/A | ISS |
| GO:0051788 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to misfolded protein | SoyBase | N/A | ISS |
| GO:0005635 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nuclear envelope | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005834 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: heterotrimeric G-protein complex | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| KOG2445 | KOG | Nuclear pore complex component (sc Seh1) | JGI | ISS | |
| PTHR11024 | Panther | PROTEIN TRANSPORT PROTEIN SEC13-RELATED | JGI | ISS | |
| PTHR11024:SF1 | Panther | PROTEIN TRANSPORT PROTEIN SEC13-RELATED | JGI | ISS | |
| PF00400 | PFAM | WD domain, G-beta repeat | JGI | ISS | |
| UniRef100_D7UPM8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: WD40 repeat nucleoporin similar to SEH1 n=1 Tax=Lotus japonicus RepID=D7UPM8_LOTJA | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LG98 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LG98_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma11g02070 not represented in the dataset |
Glyma11g02070 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g43410 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g018300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g02070.1 sequence type=CDS gene model=Glyma11g02070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGAAGGAGTTGTTGACTCTTGATAATGGCACAACCTGCACATCATGGAACTATTCTGGCACCAGGCTCGCTGCGGGTTCCGCCGATGGCACTCTTTCAATCTTCGATTCCCGCGAGCCGCCTTCTTCTTCCTCCCTCCGTTCTACTTTCAAATCTAGGGTTCTAGAAGGAAACATCGTGAAGATTGTTTGGATTCCGCCAGAATATGGTGATGCAGTTGCGTGCATTTCTGCCGATGGAATTGTGTCATTGTGGGAGGAGGTCGCAGAAGATTCCCAGTCTCTTCAGTGGAAGATGTGTAAAAGCTTTGGAAACAGTTCAAGCAAAGTCCTTGATGTTCAATTTGGAATCTCTCTTGCTAGTTTGAAAATGGTTGCTGCATATTCAGATGGTAATGTAAGAGTTTTTGAGCTCTCGGATCCCTTGGAACTGAGAAACTGGCAGCTTCAGGCTGAATTTCAAAATGTTATTGAGTCAGTGTCTTCATTTGGAAAGGCTTCATGCCTCTCAGCATCCATATCTTGGAATCCACAAAAAGGTGGAAGCCAGGAATCCAGCTTCCTTGTAGGCTTTAATTCAAATACACCAGAGCTTAATTCTTCTAAGGTTTGGGAATTTGATCAGGCTCATCAAAGATGGCTTCCTGTGGCAGAACTGGCACTGCCTGAGGACAAGGGTGATCAGGTTTATGCTGTTGCATGGGCACCAAATATTGGCAGACCATATGAGATCATTGCGGTTGCAACCCACAAGGGACTTGCAATATGGCATCTTGGATTGAACCCTGATCATGATGGAAGACTCCCAGTGGAGAGAGTTGCACTACTGTCAGGTCATGAGGGCATGGTGTGGCAAATGGAGTGGGATATGAGTGGAATGACTTTGGCTACTACAGGTCATGATGGAATGGTCCGATTGTGGCAGTCCAATCTCAATGGTGTTTGGCATCAGCAAGCTGCATTTGAACCCACTTCTTAG
>Glyma11g02070.1 sequence type=predicted peptide gene model=Glyma11g02070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAKELLTLDNGTTCTSWNYSGTRLAAGSADGTLSIFDSREPPSSSSLRSTFKSRVLEGNIVKIVWIPPEYGDAVACISADGIVSLWEEVAEDSQSLQWKMCKSFGNSSSKVLDVQFGISLASLKMVAAYSDGNVRVFELSDPLELRNWQLQAEFQNVIESVSSFGKASCLSASISWNPQKGGSQESSFLVGFNSNTPELNSSKVWEFDQAHQRWLPVAELALPEDKGDQVYAVAWAPNIGRPYEIIAVATHKGLAIWHLGLNPDHDGRLPVERVALLSGHEGMVWQMEWDMSGMTLATTGHDGMVRLWQSNLNGVWHQQAAFEPTS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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