Glyma11g01960 - SoyBase

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Report for Sequence Feature Glyma11g01960

Feature Type:	gene_model
Chromosome:	Gm11
Start:	1191236
stop:	1195611
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g01960

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G23860	AT	Annotation by Michelle Graham. TAIR10: PHD finger protein-related \| chr4:12409336-12411336 FORWARD LENGTH=452	SoyBase	E_val: 2.00E-160	ISS
GO:0006261	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA-dependent DNA replication	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0004842	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG2752	KOG	Uncharacterized conserved protein, contains N-recognin-type Zn-finger	JGI		ISS
PTHR13513	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR13513:SF4	Panther	gb def: Hypothetical protein AT4g23860	JGI		ISS
PF02207	PFAM	Putative zinc finger in N-recognin (UBR box)	JGI		ISS
UniRef100_B9RCS8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9RCS8_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1LG78	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LG78_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g01960

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g01960 not represented in the dataset	Glyma11g01960 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g01960

Paralog	Evidence	Comments
Glyma01g43520	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g01960 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g017200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g01960

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma11g01960

Limit To All Plant Sequences

>Glyma11g01960.4   sequence type=transcript   gene model=Glyma11g01960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCGGGAAAATGTCCGCATGGTCCTTACTCCACATCACTCCATATAAAAGCCCTAATTCTCTTTCTCTTTCTCACACCTCATAAATCACAAAACGCACGCACGTATACTTTGCTCTGCTCCTTACTCCAAAGTGCCCCTCTCTCGCGCTTCGTCTTTCACCACCGTACAATTTTTCCGCAGCTTCAACGCAACCTGATCGAGCAATTCCAGCATTCACTCCGCTAGCGTCTTTCACTCATAAAATTTGGTGAAATAGTGGAACGTTTCGTGAAACTCCCAAACCAGAAGCCGAAGTTTCCAAGTGAAAATGGACGGTACGTTTGACGATGAAGCTGAACCGGCCGTTACAATCCGCGAGTACCTGGAGGAAGTTGAGGAACGGGAACTGGAAGCTGATTTAGTTTTGGGGGGTGATGATGGCAAGGAGTGTACCTATAGCAAAGGTTATATGAAAAGGCAGGCAATTTTCTCTTGCCTCACCTGCACTCCAGATGGGAATGCTGGAGTTTGCACAGCTTGTTCATTGTCTTGCCATGATGGTCATCAGATTGTAGAGCTATGGACAAAAAGAAACTTCAGATGTGATTGTGGGAACTCAAAATTCGGTGAATTCTACTGCAAGATTTTCCCAAATAAAGATGTAGAAAATGTTGAGAATTCATACAATCACAACTTTAAAGGTTCATATTGCACATGTGGTCGCCCTTATCCAGATCCAGATGCTGAAGAACAAGTAGAGATGATACAGTGCTGTCTATGTGAGGACTGGTTTCATGAGGAGCATCTTGGTCTTGAGTCTTCTGCGGAGATTCCTAAAGATGATGAGGGAGAGCCAATGTATGAAGAATTCATATGTAAGGCATGCTCTGAGGTATGCTTCTTTCTAAAGTTATATCCTGAAGAAATATGGGCGGCTGGAAAGCAGCCAGACGCTACTGTCCAAATTAGCAAGGACAAAGGTGTCTTGGAAGACATCCTTTCAACTTGTCGGTCTGAAAAGCCAACTTGTGATACTTCATGTTGTTCTCCTAAAGTTGATGATGTACAAGCTACAGTTGATTCAAAATCTATATCTGATGGGAAGAGTTTGTCTCAGGGAGAAAATTGTAATGGCAGTATGGCTTCAAATCAATGCACAAAAAGCACCGATTTGCATGTTAATTGTCTCCTTAGTGTTAACATCATCACTGTTTCCCCAGTTTTACCTGGTAAACCAATGTTCCTTTCCAAAAATTGGAGACTTGCTCTATGCAAATGCAATAATTGTTTGGAGTTTTACGAGCAGAAGAAGATTGCTTTTCTACTAGACAAGGAAGACTCAATAGCAGAGTATGAGCAAATGGCCAAGCAAAAGAGAGAAGAAAAATTGCAGCAACAAGAGGGTGCTGAGTTAAGTTTTTTTAATAAACTTGGACATGTAGAGAAAGTGGAGATCTTGAAGGGCATTGAAGAGATGAAAGATGGGCTTCGTGCTTTCCTGGAGTCTGCAGACTCGTCAAAGCCAATTACTGCTGCTGATGTCCACCAGTTTTTTGATGACATTAAGAACAAGCGTCGCCGTGTACAGTAGTGAGTTTTTGATGTCTTTGCCTTCAAGGACTTGTTAGTAAAAACTTTCAGACTGTTAAGAGTTTATTTGTATTGTCTGATGTTCGAAACTAAAACTCTAAAAGCCTGCATGCTTTATGATATTTATATTACAATGCTCTACTTGTATTAACTTTGACTTACTAAACTCGTTTTGGTTCCTTTGAGTTAATTTGGATATAACATATGGCTATTAGATTCTTAGACTAAAGATTCTTTT

>Glyma11g01960.5   sequence type=transcript   gene model=Glyma11g01960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCGGGAAAATGTCCGCATGGTCCTTACTCCACATCACTCCATATAAAAGCCCTAATTCTCTTTCTCTTTCTCACACCTCATAAATCACAAAACGCACGCACGTATACTTTGCTCTGCTCCTTACTCCAAAGTGCCCCTCTCTCGCGCTTCGTCTTTCACCACCGTACAATTTTTCCGCAGCTTCAACGCAACCTGATCGAGCAATTCCAGCATTCACTCCGCTAGCGTCTTTCACTCATAAAATTTGGAACGTTTCGTGAAACTCCCAAACCAGAAGCCGAAGTTTCCAAGTGAAAATGGACGGTACGTTTGACGATGAAGCTGAACCGGCCGTTACAATCCGCGAGTACCTGGAGGAAGTTGAGGAACGGGAACTGGAAGCTGATTTAGTTTTGGGGGGTGATGATGGCAAGGAGTGTACCTATAGCAAAGGTTATATGAAAAGGCAGGCAATTTTCTCTTGCCTCACCTGCACTCCAGATGGGAATGCTGGAGTTTGCACAGCTTGTTCATTGTCTTGCCATGATGGTCATCAGATTGTAGAGCTATGGACAAAAAGAAACTTCAGATGTGATTGTGGGAACTCAAAATTCGGTGAATTCTACTGCAAGATTTTCCCAAATAAAGATGTAGAAAATGTTGAGAATTCATACAATCACAACTTTAAAGGTTCATATTGCACATGTGGTCGCCCTTATCCAGATCCAGATGCTGAAGAACAAGTAGAGATGATACAGTGCTGTCTATGTGAGGACTGGTTTCATGAGGAGCATCTTGGTCTTGAGTCTTCTGCGGAGATTCCTAAAGATGATGAGGGAGAGCCAATGTATGAAGAATTCATATGTAAGGCATGCTCTGAGGTATGCTTCTTTCTAAAGTTATATCCTGAAGAAATATGGGCGGCTGGAAAGCAGCCAGACGCTACTGTCCAAATTAGCAAGGACAAAGGTGTCTTGGAAGACATCCTTTCAACTTGTCGGTCTGAAAAGCCAACTTGTGATACTTCATGTTGTTCTCCTAAAGTTGATGATGTACAAGCTACAGTTGATTCAAAATCTATATCTGATGGGAAGAGTTTGTCTCAGGGAGAAAATTGTAATGGCAGTATGGCTTCAAATCAATGCACAAAAAGCACCGATTTGCATGTTAATTGTCTCCTTAGTGTTAACATCATCACTGTTTCCCCAGTTTTACCTGGTAAACCAATGTTCCTTTCCAAAAATTGGAGACTTGCTCTATGCAAATGCAATAATTGTTTGGAGTTTTACGAGCAGAAGAAGATTGCTTTTCTACTAGACAAGGAAGACTCAATAGCAGAGTATGAGCAAATGGCCAAGCAAAAGAGAGAAGAAAAATTGCAGCAACAAGAGGGTGCTGAGTTAAGTTTTTTTAATAAACTTGGACATGTAGAGAAAGTGGAGATCTTGAAGGGCATTGAAGAGATGAAAGATGGGCTTCGTGCTTTCCTGGAGTCTGCAGACTCGTCAAAGCCAATTACTGCTGCTGATGTCCACCAGTTTTTTGATGACATTAAGAACAAGCGTCGCCGTGTACAGTAGTGAGTTTTTGATGTCTTTGCCTTCAAGGACTTGTTAGTAAAAACTTTCAGACTGTTAAGAGTTTATTTGTATTGTCTGATGTTCGAAACTAAAACTCTAAAAGCCTGCATGCTTTATGATATTTATATTACAATGCTCTACTTGTATTAACTTTGACTTACTAAACTCGTTTTGGTTCCTTTGAGTTAATTTGGATATAACATATGGCTATTAGATTCTTAGACTAAAGATTCTTTT

Coding sequences of Glyma11g01960

Limit To All Plant Sequences

>Glyma11g01960.3   sequence type=CDS   gene model=Glyma11g01960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGGTACGTTTGACGATGAAGCTGAACCGGCCGTTACAATCCGCGAGTACCTGGAGGAAGTTGAGGAACGGGAACTGGAAGCTGATTTAGTTTTGGGGGGTGATGATGGCAAGGAGTGTACCTATAGCAAAGGTTATATGAAAAGGCAGGCAATTTTCTCTTGCCTCACCTGCACTCCAGATGGGAATGCTGGAGTTTGCACAGCTTGTTCATTGTCTTGCCATGATGGTCATCAGATTGTAGAGCTATGGACAAAAAGAAACTTCAGATGTGATTGTGGGAACTCAAAATTCGGTGAATTCTACTGCAAGATTTTCCCAAATAAAGATGTAGAAAATGTTGAGAATTCATACAATCACAACTTTAAAGGTTCATATTGCACATGTGGTCGCCCTTATCCAGATCCAGATGCTGAAGAACAAGTAGAGATGATACAGTGCTGTCTATGTGAGGACTGGTTTCATGAGGAGCATCTTGGTCTTGAGTCTTCTGCGGAGATTCCTAAAGATGATGAGGGAGAGCCAATGTATGAAGAATTCATATGTAAGGCATGCTCTGAGGTATGCTTCTTTCTAAAGTTATATCCTGAAGAAATATGGGCGGCTGGAAAGCAGCCAGACGCTACTGTCCAAATTAGCAAGGACAAAGGTGTCTTGGAAGACATCCTTTCAACTTGTCGGTCTGAAAAGCCAACTTGTGATACTTCATGTTGTTCTCCTAAAGTTGATGATGTACAAGCTACAGTTGATTCAAAATCTATATCTGATGGGAAGAGTTTGTCTCAGGGAGAAAATTGTAATGGCAGTATGGCTTCAAATCAATGCACAAAAAGCACCGATTTGCATGTTAATTGTCTCCTTAGTGTTAACATCATCACTGTTTCCCCAGTTTTACCTGGTAAACCAATGTTCCTTTCCAAAAATTGGAGACTTGCTCTATGCAAATGCAATAATTGTTTGGAGTTTTACGAGCAGAAGAAGATTGCTTTTCTACTAGACAAGGAAGACTCAATAGCAGAGTATGAGCAAATGGCCAAGCAAAAGAGAGAAGAAAAATTGCAGCAACAAGAGGGTGCTGAGTTAAGTTTTTTTAATAAACTTGGACATGTAGAGAAAGTGGAGATCTTGAAGGGCATTGAAGAGATGAAAGATGGGCTTCGTGCTTTCCTGGAGTCTGCAGACTCGTCAAAGCCAATTACTGCTGCTGATGTCCACCAGTTTTTTGATGACATTAAGAACAAGCGTCGCCGTGTACAGTAG

>Glyma11g01960.4   sequence type=CDS   gene model=Glyma11g01960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGGTACGTTTGACGATGAAGCTGAACCGGCCGTTACAATCCGCGAGTACCTGGAGGAAGTTGAGGAACGGGAACTGGAAGCTGATTTAGTTTTGGGGGGTGATGATGGCAAGGAGTGTACCTATAGCAAAGGTTATATGAAAAGGCAGGCAATTTTCTCTTGCCTCACCTGCACTCCAGATGGGAATGCTGGAGTTTGCACAGCTTGTTCATTGTCTTGCCATGATGGTCATCAGATTGTAGAGCTATGGACAAAAAGAAACTTCAGATGTGATTGTGGGAACTCAAAATTCGGTGAATTCTACTGCAAGATTTTCCCAAATAAAGATGTAGAAAATGTTGAGAATTCATACAATCACAACTTTAAAGGTTCATATTGCACATGTGGTCGCCCTTATCCAGATCCAGATGCTGAAGAACAAGTAGAGATGATACAGTGCTGTCTATGTGAGGACTGGTTTCATGAGGAGCATCTTGGTCTTGAGTCTTCTGCGGAGATTCCTAAAGATGATGAGGGAGAGCCAATGTATGAAGAATTCATATGTAAGGCATGCTCTGAGGTATGCTTCTTTCTAAAGTTATATCCTGAAGAAATATGGGCGGCTGGAAAGCAGCCAGACGCTACTGTCCAAATTAGCAAGGACAAAGGTGTCTTGGAAGACATCCTTTCAACTTGTCGGTCTGAAAAGCCAACTTGTGATACTTCATGTTGTTCTCCTAAAGTTGATGATGTACAAGCTACAGTTGATTCAAAATCTATATCTGATGGGAAGAGTTTGTCTCAGGGAGAAAATTGTAATGGCAGTATGGCTTCAAATCAATGCACAAAAAGCACCGATTTGCATGTTAATTGTCTCCTTAGTGTTAACATCATCACTGTTTCCCCAGTTTTACCTGGTAAACCAATGTTCCTTTCCAAAAATTGGAGACTTGCTCTATGCAAATGCAATAATTGTTTGGAGTTTTACGAGCAGAAGAAGATTGCTTTTCTACTAGACAAGGAAGACTCAATAGCAGAGTATGAGCAAATGGCCAAGCAAAAGAGAGAAGAAAAATTGCAGCAACAAGAGGGTGCTGAGTTAAGTTTTTTTAATAAACTTGGACATGTAGAGAAAGTGGAGATCTTGAAGGGCATTGAAGAGATGAAAGATGGGCTTCGTGCTTTCCTGGAGTCTGCAGACTCGTCAAAGCCAATTACTGCTGCTGATGTCCACCAGTTTTTTGATGACATTAAGAACAAGCGTCGCCGTGTACAGTAG

>Glyma11g01960.5   sequence type=CDS   gene model=Glyma11g01960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGGTACGTTTGACGATGAAGCTGAACCGGCCGTTACAATCCGCGAGTACCTGGAGGAAGTTGAGGAACGGGAACTGGAAGCTGATTTAGTTTTGGGGGGTGATGATGGCAAGGAGTGTACCTATAGCAAAGGTTATATGAAAAGGCAGGCAATTTTCTCTTGCCTCACCTGCACTCCAGATGGGAATGCTGGAGTTTGCACAGCTTGTTCATTGTCTTGCCATGATGGTCATCAGATTGTAGAGCTATGGACAAAAAGAAACTTCAGATGTGATTGTGGGAACTCAAAATTCGGTGAATTCTACTGCAAGATTTTCCCAAATAAAGATGTAGAAAATGTTGAGAATTCATACAATCACAACTTTAAAGGTTCATATTGCACATGTGGTCGCCCTTATCCAGATCCAGATGCTGAAGAACAAGTAGAGATGATACAGTGCTGTCTATGTGAGGACTGGTTTCATGAGGAGCATCTTGGTCTTGAGTCTTCTGCGGAGATTCCTAAAGATGATGAGGGAGAGCCAATGTATGAAGAATTCATATGTAAGGCATGCTCTGAGGTATGCTTCTTTCTAAAGTTATATCCTGAAGAAATATGGGCGGCTGGAAAGCAGCCAGACGCTACTGTCCAAATTAGCAAGGACAAAGGTGTCTTGGAAGACATCCTTTCAACTTGTCGGTCTGAAAAGCCAACTTGTGATACTTCATGTTGTTCTCCTAAAGTTGATGATGTACAAGCTACAGTTGATTCAAAATCTATATCTGATGGGAAGAGTTTGTCTCAGGGAGAAAATTGTAATGGCAGTATGGCTTCAAATCAATGCACAAAAAGCACCGATTTGCATGTTAATTGTCTCCTTAGTGTTAACATCATCACTGTTTCCCCAGTTTTACCTGGTAAACCAATGTTCCTTTCCAAAAATTGGAGACTTGCTCTATGCAAATGCAATAATTGTTTGGAGTTTTACGAGCAGAAGAAGATTGCTTTTCTACTAGACAAGGAAGACTCAATAGCAGAGTATGAGCAAATGGCCAAGCAAAAGAGAGAAGAAAAATTGCAGCAACAAGAGGGTGCTGAGTTAAGTTTTTTTAATAAACTTGGACATGTAGAGAAAGTGGAGATCTTGAAGGGCATTGAAGAGATGAAAGATGGGCTTCGTGCTTTCCTGGAGTCTGCAGACTCGTCAAAGCCAATTACTGCTGCTGATGTCCACCAGTTTTTTGATGACATTAAGAACAAGCGTCGCCGTGTACAGTAG

Predicted protein sequences of Glyma11g01960

Limit To All Plant Sequences

>Glyma11g01960.3   sequence type=predicted peptide   gene model=Glyma11g01960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDGTFDDEAEPAVTIREYLEEVEERELEADLVLGGDDGKECTYSKGYMKRQAIFSCLTCTPDGNAGVCTACSLSCHDGHQIVELWTKRNFRCDCGNSKFGEFYCKIFPNKDVENVENSYNHNFKGSYCTCGRPYPDPDAEEQVEMIQCCLCEDWFHEEHLGLESSAEIPKDDEGEPMYEEFICKACSEVCFFLKLYPEEIWAAGKQPDATVQISKDKGVLEDILSTCRSEKPTCDTSCCSPKVDDVQATVDSKSISDGKSLSQGENCNGSMASNQCTKSTDLHVNCLLSVNIITVSPVLPGKPMFLSKNWRLALCKCNNCLEFYEQKKIAFLLDKEDSIAEYEQMAKQKREEKLQQQEGAELSFFNKLGHVEKVEILKGIEEMKDGLRAFLESADSSKPITAADVHQFFDDIKNKRRRVQ*

>Glyma11g01960.4   sequence type=predicted peptide   gene model=Glyma11g01960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDGTFDDEAEPAVTIREYLEEVEERELEADLVLGGDDGKECTYSKGYMKRQAIFSCLTCTPDGNAGVCTACSLSCHDGHQIVELWTKRNFRCDCGNSKFGEFYCKIFPNKDVENVENSYNHNFKGSYCTCGRPYPDPDAEEQVEMIQCCLCEDWFHEEHLGLESSAEIPKDDEGEPMYEEFICKACSEVCFFLKLYPEEIWAAGKQPDATVQISKDKGVLEDILSTCRSEKPTCDTSCCSPKVDDVQATVDSKSISDGKSLSQGENCNGSMASNQCTKSTDLHVNCLLSVNIITVSPVLPGKPMFLSKNWRLALCKCNNCLEFYEQKKIAFLLDKEDSIAEYEQMAKQKREEKLQQQEGAELSFFNKLGHVEKVEILKGIEEMKDGLRAFLESADSSKPITAADVHQFFDDIKNKRRRVQ*

>Glyma11g01960.5   sequence type=predicted peptide   gene model=Glyma11g01960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDGTFDDEAEPAVTIREYLEEVEERELEADLVLGGDDGKECTYSKGYMKRQAIFSCLTCTPDGNAGVCTACSLSCHDGHQIVELWTKRNFRCDCGNSKFGEFYCKIFPNKDVENVENSYNHNFKGSYCTCGRPYPDPDAEEQVEMIQCCLCEDWFHEEHLGLESSAEIPKDDEGEPMYEEFICKACSEVCFFLKLYPEEIWAAGKQPDATVQISKDKGVLEDILSTCRSEKPTCDTSCCSPKVDDVQATVDSKSISDGKSLSQGENCNGSMASNQCTKSTDLHVNCLLSVNIITVSPVLPGKPMFLSKNWRLALCKCNNCLEFYEQKKIAFLLDKEDSIAEYEQMAKQKREEKLQQQEGAELSFFNKLGHVEKVEILKGIEEMKDGLRAFLESADSSKPITAADVHQFFDDIKNKRRRVQ*

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