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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G10960 | AT | Annotation by Michelle Graham. TAIR10: UDP-D-glucose/UDP-D-galactose 4-epimerase 5 | chr4:6716083-6718472 REVERSE LENGTH=351 | SoyBase | E_val: 0 | ISS |
| GO:0005975 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process | SoyBase | N/A | ISS |
| GO:0006012 | GO-bp | Annotation by Michelle Graham. GO Biological Process: galactose metabolic process | SoyBase | N/A | ISS |
| GO:0044237 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular metabolic process | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0003978 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: UDP-glucose 4-epimerase activity | SoyBase | N/A | ISS |
| GO:0016857 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: racemase and epimerase activity, acting on carbohydrates and derivatives | SoyBase | N/A | ISS |
| GO:0046983 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity | SoyBase | N/A | ISS |
| GO:0050662 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: coenzyme binding | SoyBase | N/A | ISS |
| KOG1371 | KOG | UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase | JGI | ISS | |
| PTHR10366 | Panther | NAD DEPENDENT EPIMERASE/DEHYDRATASE | JGI | ISS | |
| PTHR10366:SF39 | Panther | CDP-3, 6-DIDEOXY-D-GLYCERO-L-GLYCERO-4-HEXULOSE-4-REDUCTASE | JGI | ISS | |
| PF01370 | PFAM | NAD dependent epimerase/dehydratase family | JGI | ISS | |
| UniRef100_G7K9B4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: UDP-glucose 4-epimerase n=1 Tax=Medicago truncatula RepID=G7K9B4_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LG74 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=3 Tax=Glycine max RepID=I1LG74_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma11g01940 not represented in the dataset |
Glyma11g01940 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g43540 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g017100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g01940.3 sequence type=transcript gene model=Glyma11g01940 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CAAAAAAATAACAATAGTTTTCTTAAAAAAAAAGAAGATATATTTAACCGGCCCCTGCATTAAATTTAACAAACCGAAATTAAAGAAAAATGAGAGTGTTTGGGAGTGATGTAGACATGATTATATGAACGTGGCTGATCTGTTGTTCCCTCCATAAATATTCGCATAAAACCATCAAATTCCGAAACAGGAACACACAATTCATTTTCGAACGAACGTGTCACAGAATTCTCGCCTTTTCCGAATATGGCATCGCGCGTCAGCATTGGCAATCTCACTTCCTCCGCGCCGTATATTAATTCCCCTCATTTTCGCTCACAACTTAAGCTTTCCAGCAACTCCTCTTTGCACAAGCCACTCATGCGCGACAAGACTGTGCTGGTAACCGGCGGAGCCGGTTACATCGGCACCCACACCGTTCTTCAGCTCTTGCTCGGAGGTTGCAGAACCGTCGTCGTCGACAATCTCGACAATTCCTCCGAGGTTTCTATCCACCGAGTCAGGGAGCTTGCCGGCGAATTTGGGAACAACCTCTCCTTTCACAAGGTGGACCTACGGGACAGGGATGCACTAGAGCAAATTTTTGTTTCCACACAATTTGATGCTGTCATACACTTTGCTGGACTGAAAGCAGTAGGAGAAAGTGTGCAAAAACCTTTACTATACTATAACAACAACTTGACTGGGACAATCACTCTATTGGAAGTCATGGCTGCCCATGGATGCAAGAAGCTCGTGTTCTCTTCTTCAGCAACTGTATATGGTTGGCCAAAGGAAGTTCCATGCACAGAAGAGTTCCCTCTGTCAGCAATGAACCCATATGGACGAACTAAGCTTATCATTGAAGAAATTTGTCGTGATGTCCACCGTGCAGAGCCAGATTGGAAAATAATATTGTTAAGATACTTCAACCCAGTCGGTGCACACCCTAGCGGTTGTATTGGGGAGGATCCCCGCGGAATTCCAAACAATCTCATGCCATTTGTTCAGCAAGTAGCAGTTGGCCGACGGCCTGCACTGACAGTTTTTGGAAATGATTATAATACAACTGATGGCACTGGGGTTCGGGATTACATTCATGTTGTTGATTTAGCAGATGGGCACATTGCTGCGTTGCTTAAACTAGATGATCCTAATATAGGTTGTGAGGTTTATAACCTGGGAACAGGAAAGGGAACATCAGTTTTGGAGATGGTTCGAGCTTTTGAGATGGCATCTGGAAAGAAAATTCCACTTGTGATGGCTGGCCGTAGACCTGGTGATGCTGAAATTGTTTATGCATCAACAAAGAAAGCGGAAAGAGAGCTTAAATGGAAGTGAGTGTCAATTGGCTCTTCCTCCTGAATATCCGGGATAGATGATAAAAGCTTAATATTATGAAACAATTATTTTATAAGACTTGAAAGTTGAAACACATGTTCTTGATAAATTCTGGTTTTGTAGTACTTTCATGCATTTTACTTTAAAAAATTCTTTTATTCACTTCTTTTCC >Glyma11g01940.4 sequence type=transcript gene model=Glyma11g01940 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CAAAAAAATAACAATAGTTTTCTTAAAAAAAAAGAAGATATATTTAACCGGCCCCTGCATTAAATTTAACAAACCGAAATTAAAGAAAAATGAGAGTGTTTGGGAGTGATGTAGACATGATTATATGAACGTGGCTGATCTGTTGTTCCCTCCATAAATATTCGCATAAAACCATCAAATTCCGAAACAGGAACACACAATTCATTTTCGAACGAACGTGTCACAGAATTCTCGCCTTTTCCGAATATGGCATCGCGCGTCAGCATTGGCAATCTCACTTCCTCCGCGCCGTATATTAATTCCCCTCATTTTCGCTCACAACTTAAGCTTTCCAGCAACTCCTCTTTGCACAAGCCACTCATGCGCGACAAGACTGTGCTGGTAACCGGCGGAGCCGGTTACATCGGCACCCACACCGTTCTTCAGCTCTTGCTCGGAGGTTGCAGAACCGTCGTCGTCGACAATCTCGACAATTCCTCCGAGGTTTCTATCCACCGAGTCAGGGAGCTTGCCGGCGAATTTGGGAACAACCTCTCCTTTCACAAGGTGGACCTACGGGACAGGGATGCACTAGAGCAAATTTTTGTTTCCACACAATTTGATGCTGTCATACACTTTGCTGGACTGAAAGCAGTAGGAGAAAGTGTGCAAAAACCTTTACTATACTATAACAACAACTTGACTGGGACAATCACTCTATTGGAAGTCATGGCTGCCCATGGATGCAAGAAGCTCGTGTTCTCTTCTTCAGCAACTGTATATGGTTGGCCAAAGGAAGTTCCATGCACAGAAGAGTTCCCTCTGTCAGCAATGAACCCATATGGACGAACTAAGCTTATCATTGAAGAAATTTGTCGTGATGTCCACCGTGCAGAGCCAGATTGGAAAATAATATTGTTAAGATACTTCAACCCAGTCGGTGCACACCCTAGCGGTTGTATTGGGGAGGATCCCCGCGGAATTCCAAACAATCTCATGCCATTTGTTCAGCAAGTAGCAGTTGGCCGACGGCCTGCACTGACAGTTTTTGGAAATGATTATAATACAACTGATGGCACTGGGGTTCGGGATTACATTCATGTTGTTGATTTAGCAGATGGGCACATTGCTGCGTTGCTTAAACTAGATGATCCTAATATAGGTTGTGAGGTTTATAACCTGGGAACAGGAAAGGGAACATCAGTTTTGGAGATGGTTCGAGCTTTTGAGATGGCATCTGGAAAGGTGAATAGAATAATGTATCTTTTTCTGGTCTTATATATGCCAATTGTCAACATAATCCTGGCCATCAACTTTAATGTCATTTTTTAAAGCATTTGGTTGTTCACATTCTGTTTTTCTCCTTTCT
>Glyma11g01940.1 sequence type=CDS gene model=Glyma11g01940 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCATCGCGCGTCAGCATTGGCAATCTCACTTCCTCCGCGCCGTATATTAATTCCCCTCATTTTCGCTCACAACTTAAGCTTTCCAGCAACTCCTCTTTGCACAAGCCACTCATGCGCGACAAGACTGTGCTGGTAACCGGCGGAGCCGGTTACATCGGCACCCACACCGTTCTTCAGCTCTTGCTCGGAGGTTGCAGAACCGTCGTCGTCGACAATCTCGACAATTCCTCCGAGGTTTCTATCCACCGAGTCAGGGAGCTTGCCGGCGAATTTGGGAACAACCTCTCCTTTCACAAGGTGGACCTACGGGACAGGGATGCACTAGAGCAAATTTTTGTTTCCACACAATTTGATGCTGTCATACACTTTGCTGGACTGAAAGCAGTAGGAGAAAGTGTGCAAAAACCTTTACTATACTATAACAACAACTTGACTGGGACAATCACTCTATTGGAAGTCATGGCTGCCCATGGATGCAAGAAGCTCGTGTTCTCTTCTTCAGCAACTGTATATGGTTGGCCAAAGGAAGTTCCATGCACAGAAGAGTTCCCTCTGTCAGCAATGAACCCATATGGACGAACTAAGCTTATCATTGAAGAAATTTGTCGTGATGTCCACCGTGCAGAGCCAGATTGGAAAATAATATTGTTAAGATACTTCAACCCAGTCGGTGCACACCCTAGCGGTTGTATTGGGGAGGATCCCCGCGGAATTCCAAACAATCTCATGCCATTTGTTCAGCAAGTAGCAGTTGGCCGACGGCCTGCACTGACAGTTTTTGGAAATGATTATAATACAACTGATGGCACTGGGGTTCGGGATTACATTCATGTTGTTGATTTAGCAGATGGGCACATTGCTGCGTTGCTTAAACTAGATGATCCTAATATAGGTTGTGAGGTTTATAACCTGGGAACAGGAAAGGGAACATCAGTTTTGGAGATGGTTCGAGCTTTTGAGATGGCATCTGGAAAGAAAATTCCACTTGTGATGGCTGGCCGTAGACCTGGTGATGCTGAAATTGTTTATGCATCAACAAAGAAAGCGGAAAGAGAGCTTAAATGGAAGGCAAAATATGGCATTGATGAGATGTGCCGCGATCAATGGAATTGGGCTAGCAAAAACCCTTATGGCTATGGAGATCAGGAGGATTCCACCGTTTAA >Glyma11g01940.3 sequence type=CDS gene model=Glyma11g01940 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCATCGCGCGTCAGCATTGGCAATCTCACTTCCTCCGCGCCGTATATTAATTCCCCTCATTTTCGCTCACAACTTAAGCTTTCCAGCAACTCCTCTTTGCACAAGCCACTCATGCGCGACAAGACTGTGCTGGTAACCGGCGGAGCCGGTTACATCGGCACCCACACCGTTCTTCAGCTCTTGCTCGGAGGTTGCAGAACCGTCGTCGTCGACAATCTCGACAATTCCTCCGAGGTTTCTATCCACCGAGTCAGGGAGCTTGCCGGCGAATTTGGGAACAACCTCTCCTTTCACAAGGTGGACCTACGGGACAGGGATGCACTAGAGCAAATTTTTGTTTCCACACAATTTGATGCTGTCATACACTTTGCTGGACTGAAAGCAGTAGGAGAAAGTGTGCAAAAACCTTTACTATACTATAACAACAACTTGACTGGGACAATCACTCTATTGGAAGTCATGGCTGCCCATGGATGCAAGAAGCTCGTGTTCTCTTCTTCAGCAACTGTATATGGTTGGCCAAAGGAAGTTCCATGCACAGAAGAGTTCCCTCTGTCAGCAATGAACCCATATGGACGAACTAAGCTTATCATTGAAGAAATTTGTCGTGATGTCCACCGTGCAGAGCCAGATTGGAAAATAATATTGTTAAGATACTTCAACCCAGTCGGTGCACACCCTAGCGGTTGTATTGGGGAGGATCCCCGCGGAATTCCAAACAATCTCATGCCATTTGTTCAGCAAGTAGCAGTTGGCCGACGGCCTGCACTGACAGTTTTTGGAAATGATTATAATACAACTGATGGCACTGGGGTTCGGGATTACATTCATGTTGTTGATTTAGCAGATGGGCACATTGCTGCGTTGCTTAAACTAGATGATCCTAATATAGGTTGTGAGGTTTATAACCTGGGAACAGGAAAGGGAACATCAGTTTTGGAGATGGTTCGAGCTTTTGAGATGGCATCTGGAAAGAAAATTCCACTTGTGATGGCTGGCCGTAGACCTGGTGATGCTGAAATTGTTTATGCATCAACAAAGAAAGCGGAAAGAGAGCTTAAATGGAAGTGA >Glyma11g01940.4 sequence type=CDS gene model=Glyma11g01940 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCATCGCGCGTCAGCATTGGCAATCTCACTTCCTCCGCGCCGTATATTAATTCCCCTCATTTTCGCTCACAACTTAAGCTTTCCAGCAACTCCTCTTTGCACAAGCCACTCATGCGCGACAAGACTGTGCTGGTAACCGGCGGAGCCGGTTACATCGGCACCCACACCGTTCTTCAGCTCTTGCTCGGAGGTTGCAGAACCGTCGTCGTCGACAATCTCGACAATTCCTCCGAGGTTTCTATCCACCGAGTCAGGGAGCTTGCCGGCGAATTTGGGAACAACCTCTCCTTTCACAAGGTGGACCTACGGGACAGGGATGCACTAGAGCAAATTTTTGTTTCCACACAATTTGATGCTGTCATACACTTTGCTGGACTGAAAGCAGTAGGAGAAAGTGTGCAAAAACCTTTACTATACTATAACAACAACTTGACTGGGACAATCACTCTATTGGAAGTCATGGCTGCCCATGGATGCAAGAAGCTCGTGTTCTCTTCTTCAGCAACTGTATATGGTTGGCCAAAGGAAGTTCCATGCACAGAAGAGTTCCCTCTGTCAGCAATGAACCCATATGGACGAACTAAGCTTATCATTGAAGAAATTTGTCGTGATGTCCACCGTGCAGAGCCAGATTGGAAAATAATATTGTTAAGATACTTCAACCCAGTCGGTGCACACCCTAGCGGTTGTATTGGGGAGGATCCCCGCGGAATTCCAAACAATCTCATGCCATTTGTTCAGCAAGTAGCAGTTGGCCGACGGCCTGCACTGACAGTTTTTGGAAATGATTATAATACAACTGATGGCACTGGGGTTCGGGATTACATTCATGTTGTTGATTTAGCAGATGGGCACATTGCTGCGTTGCTTAAACTAGATGATCCTAATATAGGTTGTGAGGTTTATAACCTGGGAACAGGAAAGGGAACATCAGTTTTGGAGATGGTTCGAGCTTTTGAGATGGCATCTGGAAAGGTGAATAGAATAATGTATCTTTTTCTGGTCTTATATATGCCAATTGTCAACATAATCCTGGCCATCAACTTTAATGTCATTTTTTAA
>Glyma11g01940.1 sequence type=predicted peptide gene model=Glyma11g01940 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASRVSIGNLTSSAPYINSPHFRSQLKLSSNSSLHKPLMRDKTVLVTGGAGYIGTHTVLQLLLGGCRTVVVDNLDNSSEVSIHRVRELAGEFGNNLSFHKVDLRDRDALEQIFVSTQFDAVIHFAGLKAVGESVQKPLLYYNNNLTGTITLLEVMAAHGCKKLVFSSSATVYGWPKEVPCTEEFPLSAMNPYGRTKLIIEEICRDVHRAEPDWKIILLRYFNPVGAHPSGCIGEDPRGIPNNLMPFVQQVAVGRRPALTVFGNDYNTTDGTGVRDYIHVVDLADGHIAALLKLDDPNIGCEVYNLGTGKGTSVLEMVRAFEMASGKKIPLVMAGRRPGDAEIVYASTKKAERELKWKAKYGIDEMCRDQWNWASKNPYGYGDQEDSTV* >Glyma11g01940.3 sequence type=predicted peptide gene model=Glyma11g01940 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASRVSIGNLTSSAPYINSPHFRSQLKLSSNSSLHKPLMRDKTVLVTGGAGYIGTHTVLQLLLGGCRTVVVDNLDNSSEVSIHRVRELAGEFGNNLSFHKVDLRDRDALEQIFVSTQFDAVIHFAGLKAVGESVQKPLLYYNNNLTGTITLLEVMAAHGCKKLVFSSSATVYGWPKEVPCTEEFPLSAMNPYGRTKLIIEEICRDVHRAEPDWKIILLRYFNPVGAHPSGCIGEDPRGIPNNLMPFVQQVAVGRRPALTVFGNDYNTTDGTGVRDYIHVVDLADGHIAALLKLDDPNIGCEVYNLGTGKGTSVLEMVRAFEMASGKKIPLVMAGRRPGDAEIVYASTKKAERELKWK* >Glyma11g01940.4 sequence type=predicted peptide gene model=Glyma11g01940 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASRVSIGNLTSSAPYINSPHFRSQLKLSSNSSLHKPLMRDKTVLVTGGAGYIGTHTVLQLLLGGCRTVVVDNLDNSSEVSIHRVRELAGEFGNNLSFHKVDLRDRDALEQIFVSTQFDAVIHFAGLKAVGESVQKPLLYYNNNLTGTITLLEVMAAHGCKKLVFSSSATVYGWPKEVPCTEEFPLSAMNPYGRTKLIIEEICRDVHRAEPDWKIILLRYFNPVGAHPSGCIGEDPRGIPNNLMPFVQQVAVGRRPALTVFGNDYNTTDGTGVRDYIHVVDLADGHIAALLKLDDPNIGCEVYNLGTGKGTSVLEMVRAFEMASGKVNRIMYLFLVLYMPIVNIILAINFNVIF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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