SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G42080 | AT | Annotation by Michelle Graham. TAIR10: dynamin-like protein | chr5:16820661-16824536 REVERSE LENGTH=610 | SoyBase | E_val: 0 | ISS |
| GO:0000911 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0009920 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell plate formation involved in plant-type cell wall biogenesis | SoyBase | N/A | ISS |
| GO:0010051 | GO-bp | Annotation by Michelle Graham. GO Biological Process: xylem and phloem pattern formation | SoyBase | N/A | ISS |
| GO:0010091 | GO-bp | Annotation by Michelle Graham. GO Biological Process: trichome branching | SoyBase | N/A | ISS |
| GO:0032880 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of protein localization | SoyBase | N/A | ISS |
| GO:0072583 | GO-bp | Annotation by Michelle Graham. GO Biological Process: clathrin-mediated endocytosis | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005773 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuole | SoyBase | N/A | ISS |
| GO:0005774 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005874 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: microtubule | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009504 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cell plate | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0009535 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane | SoyBase | N/A | ISS |
| GO:0045334 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: clathrin-coated endocytic vesicle | SoyBase | N/A | ISS |
| GO:0003924 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTPase activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0005525 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTP binding | SoyBase | N/A | ISS |
| GO:0030276 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: clathrin binding | SoyBase | N/A | ISS |
| GO:0043424 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein histidine kinase binding | SoyBase | N/A | ISS |
| KOG0446 | KOG | Vacuolar sorting protein VPS1, dynamin, and related proteins | JGI | ISS | |
| PTHR11566 | Panther | DYNAMIN | JGI | ISS | |
| PTHR11566:SF12 | Panther | DYNAMIN | JGI | ISS | |
| PF00350 | PFAM | Dynamin family | JGI | ISS | |
| PF01031 | PFAM | Dynamin central region | JGI | ISS | |
| PF02212 | PFAM | Dynamin GTPase effector domain | JGI | ISS | |
| UniRef100_B9RCT9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Dynamin, putative n=1 Tax=Ricinus communis RepID=B9RCT9_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LG73 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LG73_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma11g01930 not represented in the dataset |
Glyma11g01930 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g43550 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g017000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g01930.1 sequence type=CDS gene model=Glyma11g01930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGAACCTAATTTCTTTGGTGAACAAAATCCAGAGGGCTTGCACCGCTTTGGGTGACCACGGCGAAGCAAGTGCCTTACCCACTCTCTGGGACTCTCTCCCCGCTATCGCCGTCGTCGGTGGCCAGAGCTCTGGAAAGTCCTCAGTATTGGAAAGTATTGTTGGCAAGGATTTCTTACCTCGTGGATCAGGGATTGTTACTCGGCGACCCCTTGTTTTGCAGCTTCACAAGATTGACGAGGGTGGCAGAGAGTATGCTGAATTTCTACATCTTCCCAGGAAAAGGTTCACCGATTTTGCTGCTGTGAGAAAAGAGATTCAAGATGAAACCGATAGAGAGACTGGACGAACAAGACAGATTTCAAGCGTTCCAATTCATCTTAGTATATATTCTCCCAATGTTGTTAACTTGACTCTTATTGATCTTCCTGGCCTTACAAAGGTAGCTGTAGAGGGCCAACCAGATAGTATTGTCCAAGATATTGAGAATATGGTTCGCTCCTACATTGAGAAGCCAAACTGTTTAATTTTGGCTATTACACCTGCCAATCAAGATCTTGCAACATCTGATGCAATTAAAATATCCCGTGAAGTGGATCCCACAGGGGAAAGAACATTTGGAGTCTTGACAAAGATTGATCTTATGGACAAGGGTACTGATGCTGTTGAAATGTTGGAGGGGAGAGCTTATAGATTAAAGTATCCGTGGATCGGTGTTGTCAATAGATCACAAGCAGATATTAACAAGAATGTTGACATGATTGCTGCTAGACGTAGAGAACGTGAATATTTTTCTAATACCCCTGAATATAATCACCTTGCTAACAGAATGGGTTCTGAGCATCTAGCAAAGATGCTTTCTAAGCATTTGGAGGCAGTAATCAAGTCCAAAATTCCTGGTATTCAATCTCTTATTAGTAAAACAATTGCTGAACTTGAAGCTGAACTGAGTCGTCTGGGAAAGCCTATTGCAGCTGATGATGGGGGAAAGCTGTATTCAATCATGGAAATTTGCCGCTCATTTGATCATATATTCAAAGAACATCTTGATGGCGTGCGACCTGGAGGCGATAAAATTTATAATGTCTTTGACAATCAGTTGCCTGCTGCCTTAAAAAGGCTGCAGTTTGATAAGCAGCTTTCGATGGAAAATATAAGGAAACTTATTACGGAAGCTGATGGGTATCAACCTCATCTAATAGCTCCTGAACAAGGATACCGTCGACTAATTGAATCTTCTCTAACTACTGTCAGGGGTCCAGCTGAGGCAGCTGTTGATGCGGTTCATTCCCTATTAAAAGACCTGGTTCACAAAGCTATTAGTGAGACTCTGGACTTGAAGCAATATCCTGGTCTACGTGTTGAGGTTGGGAATGCCGCCATTGATTCGCTAGAAAAAATGAGGGAGGAAAGCAAAAGAGCAACACTACAGCTAGTTGATATGGAGTGTGGCTATTTGACGGTTGATTACTTTCGGAAGCTTCCTCAAGATGTTGATAAGGGTGGCAATGCTACACATTCAATTTTTGATAGATATAATGATTCATATCTTAGGAGAATTGGAACCAATGTTCTGTCTTATGTCAATATGGTCTGTGCAAGTCTGCGTCATTCAATTCCCAAGTCAATTGTCTATTGTCAAGTGAGGGAAGCCAAACGAGGCCTACTTGATCAGTTTTTCACCGAGCTAGGCAAAATTGAGCCCAAGCGTCTGTCCTCATTTCTGAATGAGGATCCTGCAATCATGGAAAGACGAAGTGCCCTATCAAAGAGACTTGAGTTATACCGGAGTGCACAAGCTGAGATCGATGCAGTTGCATGGTCTAAGTAG
>Glyma11g01930.1 sequence type=predicted peptide gene model=Glyma11g01930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKIDEGGREYAEFLHLPRKRFTDFAAVRKEIQDETDRETGRTRQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCLILAITPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDKGTDAVEMLEGRAYRLKYPWIGVVNRSQADINKNVDMIAARRREREYFSNTPEYNHLANRMGSEHLAKMLSKHLEAVIKSKIPGIQSLISKTIAELEAELSRLGKPIAADDGGKLYSIMEICRSFDHIFKEHLDGVRPGGDKIYNVFDNQLPAALKRLQFDKQLSMENIRKLITEADGYQPHLIAPEQGYRRLIESSLTTVRGPAEAAVDAVHSLLKDLVHKAISETLDLKQYPGLRVEVGNAAIDSLEKMREESKRATLQLVDMECGYLTVDYFRKLPQDVDKGGNATHSIFDRYNDSYLRRIGTNVLSYVNMVCASLRHSIPKSIVYCQVREAKRGLLDQFFTELGKIEPKRLSSFLNEDPAIMERRSALSKRLELYRSAQAEIDAVAWSK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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