SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G11260 | AT | Annotation by Michelle Graham. TAIR10: sugar transporter 1 | chr1:3777460-3780133 FORWARD LENGTH=522 | SoyBase | E_val: 0 | ISS |
| GO:0009627 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance | SoyBase | N/A | ISS |
| GO:0015749 | GO-bp | Annotation by Michelle Graham. GO Biological Process: monosaccharide transport | SoyBase | N/A | ISS |
| GO:0031347 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of defense response | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005773 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuole | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0005351 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sugar:hydrogen symporter activity | SoyBase | N/A | ISS |
| GO:0015144 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: carbohydrate transmembrane transporter activity | SoyBase | N/A | ISS |
| GO:0015145 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: monosaccharide transmembrane transporter activity | SoyBase | N/A | ISS |
| KOG0254 | KOG | Predicted transporter (major facilitator superfamily) | JGI | ISS | |
| PTHR24063 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24063:SF116 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00083 | PFAM | Sugar (and other) transporter | JGI | ISS | |
| UniRef100_G7J926 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Hexose transporter n=1 Tax=Medicago truncatula RepID=G7J926_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LG72 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LG72_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma11g01920 not represented in the dataset |
Glyma11g01920 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g016900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g01920.1 sequence type=CDS gene model=Glyma11g01920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAGGTGCTTTCATCGAATCTAAGGGAGGCAAAGCCTATCCTGGTGGGCTTACACGGAGAGTCTTTTTTACATGTTTCGTGGCTGCATTTGGAGGACTAATTTTTGGTTACGATCTTGGCATATCCGGTGGAGTTACGTCTATGGATCCATTTTTGAAGAAATTCTTTCCCGAAGTGTATGAAAAGGAGCACGACATGAAACCATCTGACAATCAGTACTGCAAATTCGACAGCCAAACTTTGACCTTGTTTACTTCATCTCTGTATTTGGCGGCTTTAGTGGCATCACTTGTTGCATCTGTGGTGACTCGAGCCTTTGGAAGGCGGCTTACGATGATCTTTGGGGGTTTGCTCTTTCTCTTTGGAGCTGGACTCAATTTCTTCGCTGCACACGTTTGGATGCTTATTGTTGGTCGTCTACTACTTGGCTTTGGAATTGGATGTGCCAATCAGTCTGTGCCAATCTACATGTCCGAGGTTGCTCCATACAATTACAGAGGAGCTCTTAATATGATGTTTCAATTAGCCATCACTATTGGAATCTTTGCTGCTAATCTCTTAAACTATCTTTTTGCCCAATACAAGGGCGTGGATGCGTGGCGCTACAGCTTGGGTTGTGCTGCAGTACCTGCATTGATGATAATCTTTGGTGCATTCTTTCTTCCAGAGTCACCAAGTTCATTGATTGAACGAGGTTTAGATGAAAAAGCCAAGACAGAGTTGCAGAAGATTCGAGGAAGCAAAGTCGACGTAGACGATGAGTTTAAAGATCTTGTGGCTGCGAGTGAATCCTCCAAAGCTGTGAAACACCCTTGGGCCTCTTTGCTCAAGAGGCACTACAGACCCCAACTTACATTTGCCATAGCTATCCCTTTCTTCCAACAACTCACTGGCATGAACGTCATCACCTTCTACGCTCCTGTTTTGTTTAAAACCATTGGCTTTGGTGCCACTGCTTCTCTCATGTCTGCCCTCATCACTGGGGCTTGCAATGCAGTTGCCACTCTTGTTTCAATATTCACTGTTGACAAATTTGGGAGACGCACCCTCTTCTTAGAAGGAGGGACACAAATGTTTCTTTGTCAGGTTTTGATTACTAGTTTAATTGGAATAAAATTTGGAGTTGATGGAACACCAGGAGAGTTGCCAAAGTGGTACGCTACTATAATTGTGGTGGGCATATGTGTGTATGTGGCAGGATTTGCATGGTCTTGGGGTCCTTTAGGGTGGTTGGTGCCAAGTGAGATTTTCCCACTTGAAGTGCGATCTGCTTGCCAAAGTATAAACGTTGCTGTTAACATGATCTTCACCTTTGCCATTGCTCAAATCTTTACCACGATGTTGTGTCACATGAAGTTTGGACTATTCATTTTTTTTGCTTGTTTTGTGGTGGGGATGAGCATATTTATCTACAAGTTTCTACCAGAGACCAAGGGTGTCCCCATTGAAGAAATGCATGTTGTGTGGCAGAATCACCCCTATTGGAGAAAGTTTGTTAAACCAACTGACTCCAAACCTCCTAGCGACGAGGTATAG
>Glyma11g01920.1 sequence type=predicted peptide gene model=Glyma11g01920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAGAFIESKGGKAYPGGLTRRVFFTCFVAAFGGLIFGYDLGISGGVTSMDPFLKKFFPEVYEKEHDMKPSDNQYCKFDSQTLTLFTSSLYLAALVASLVASVVTRAFGRRLTMIFGGLLFLFGAGLNFFAAHVWMLIVGRLLLGFGIGCANQSVPIYMSEVAPYNYRGALNMMFQLAITIGIFAANLLNYLFAQYKGVDAWRYSLGCAAVPALMIIFGAFFLPESPSSLIERGLDEKAKTELQKIRGSKVDVDDEFKDLVAASESSKAVKHPWASLLKRHYRPQLTFAIAIPFFQQLTGMNVITFYAPVLFKTIGFGATASLMSALITGACNAVATLVSIFTVDKFGRRTLFLEGGTQMFLCQVLITSLIGIKFGVDGTPGELPKWYATIIVVGICVYVAGFAWSWGPLGWLVPSEIFPLEVRSACQSINVAVNMIFTFAIAQIFTTMLCHMKFGLFIFFACFVVGMSIFIYKFLPETKGVPIEEMHVVWQNHPYWRKFVKPTDSKPPSDEV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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