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Report for Sequence Feature Glyma11g01901

Feature Type:gene_model
Chromosome:Gm11
Start:1150207
stop:1151502
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma11g01901
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G64460AT Annotation by Michelle Graham. TAIR10: Protein kinase superfamily protein | chr1:23943688-23944680 REVERSE LENGTH=301 SoyBaseE_val: 1.00E-50ISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0016773GO-mf Annotation by Michelle Graham. GO Molecular Function: phosphotransferase activity, alcohol group as acceptor SoyBaseN/AISS
PTHR15245Panther FAMILY NOT NAMED JGI ISS
PTHR15245:SF11Panther gb def: T17H3.7 JGI ISS
UniRef100_G7K9A8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Phosphatidylinositol 4-kinase type 2-beta n=1 Tax=Medicago truncatula RepID=G7K9A8_MEDTR SoyBaseE_val: 3.00E-65ISS
UniRef100_I1JAE9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JAE9_SOYBN SoyBaseE_val: 1.00E-73ISS

Expression Patterns of Glyma11g01901
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g01901 not represented in the dataset
Glyma11g01901 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g01901
ParalogEvidenceComments
Glyma01g43580 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g01901 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g016600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma11g01901
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma11g01901
>Glyma11g01901.1   sequence type=CDS   gene model=Glyma11g01901   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTCAAGGAGTGTCAACATATGTTGTTGGGTATTGCATTGACACAATGTTTATTGTCTCTGCAGTTTGAGGATTGCACATTTGATTGGCTTTACTGGTCCCAAGCACGTGAGCCTTACTCCCCTGATAGGGTTGATTATATCAAATCTCTGGATGCGGAGAAAGACACAGAGCTTCTGAAATATTACGGGTGGAATGTCCCGGTTGAGTGTGCACGAACACTCCGCATCTCCACAATTTTATTGAAGAAAGGGGTTGACAGAGGCCTCACTCCCTATGAAATTGGAAGCATTATGTCTAGGGAAAATTTGAACAAGGAATCTGTAATCGACGAGATTATTTGTGAAGCCCAAGAATCATTGCTACCTGGCATGGAGGAATATGTGTTTCTTGAATCTGTCTCCCAGATCATGGATTCCCGCTTGATAAGCTTTCAAAATAGACTCTCTGGGATTCCTAGTTATATTATATAA
Predicted protein sequences of Glyma11g01901
>Glyma11g01901.1   sequence type=predicted peptide   gene model=Glyma11g01901   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVKECQHMLLGIALTQCLLSLQFEDCTFDWLYWSQAREPYSPDRVDYIKSLDAEKDTELLKYYGWNVPVECARTLRISTILLKKGVDRGLTPYEIGSIMSRENLNKESVIDEIICEAQESLLPGMEEYVFLESVSQIMDSRLISFQNRLSGIPSYII*






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