SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G08520 | AT | Annotation by Michelle Graham. TAIR10: ALBINA 1 | chr1:2696538-2700819 FORWARD LENGTH=760 | SoyBase | E_val: 0 | ISS |
| GO:0009690 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytokinin metabolic process | SoyBase | N/A | ISS |
| GO:0015979 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photosynthesis | SoyBase | N/A | ISS |
| GO:0015995 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chlorophyll biosynthetic process | SoyBase | N/A | ISS |
| GO:0019288 | GO-bp | Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009534 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0010007 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: magnesium chelatase complex | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016851 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: magnesium chelatase activity | SoyBase | N/A | ISS |
| GO:0017111 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity | SoyBase | N/A | ISS |
| PF00092 | PFAM | von Willebrand factor type A domain | JGI | ISS | |
| PF01078 | PFAM | Magnesium chelatase, subunit ChlI | JGI | ISS | |
| UniRef100_I1LG65 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LG65_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_O22437 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Magnesium-chelatase subunit ChlD, chloroplastic n=1 Tax=Pisum sativum RepID=CHLD_PEA | SoyBase | E_val: 0 | ISS |
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Glyma11g01840 not represented in the dataset |
Glyma11g01840 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g43630 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g016000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g01840.2 sequence type=transcript gene model=Glyma11g01840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATTTAATTTAAAACAAAGCAAGAGAAAAGAAGGGATAAGATTATAAGAAAGTTGGGATTGAGTGAAGAAACAGTGGTCGTTCTCTCTGAAATGGGTTTCGCTTTGGCATACACAGCATCTGGTTGTTGCTCAAACCTACAATTTCAGTCTCTGTTATTCGCTGCTGCTTCATTGAGATCAAAACCGTGTCTCTCTCTCTGCAACTCTACTTATCGACCCAAACGCATTCTCCAGCGTTCTCCAATTGTTGGCGCTCAGTCTGAAAATGGAGCTCTGGTTACTTCGGAGAAGCCCGACACTAATTACGGAAGACAATACTTCCCCCTCGCTGCTGTTGTAGGCCAAGATTCTATAAAAACTGCTCTTTTACTTGGTGCAATTGACCCCGGGGTTGGAGGAATTGCCATATCAGGAAAGCGAGGAACTGCCAAAACTGTAATGGCACGTGGATTGCATGCAATACTGCCTCCTATTGAAGTGGTAGAAGGTTCCATTGCCAATGCGGATCCAACCTGCCCAGAAGAGTGGGAAGATGGTCTTACAGAATGCCTGGAATATGATTCTACTGGAAATATTAAAACTCGTATTATCAAGTCTCCCTTTGTTCAGATTCCTCTTGGAGTCACAGAGGACAGACTCATTGGATCGGTTGATGTTGAGGAGTCTGTGAAAACAGGCACAACTGTTTTCCAGCCTGGTTTACTTGCAGAAGCTCATAGAGGTGTTTTATATGTTGATGAAATTAATCTTTTGGATGAGGGTATCAGTAATTTGCTCCTCAATGTATTGACTGAAGGAGTAAACACTGTTGAAAGAGAGGGGATCAGTTTCAAGCACCCTTGCAGGCCCCTTCTCATTGCCACCTATAACCCAGAAGAGGGTGCTGTTCGTGAACATCTGCTGGATCGCATTGCGATTAATTTAAGTGCAGATCTTCCAATGAGTTTTGAAAACCGTGTTGCAGCTGTTGGAATTGCCACAGAGTTTCAGGAGAACAGTAGCCAAGTATTTGAGATGGTCGAAGAGGAAACAGACAATGCAAAAACTCAGATCATCTTAGCCAGAGAGTATCTAAAAGATGTTACTCTTAACAGAGAACAATTAAAATACCTGGTTATTGAAGCTTTACGGGGCGGTTGCCAGGGACATAGAGCTGAGCTATTTGCTGCCCGTGTTGCAAAGTGCTTAGCTGCTTTGGAGGGACGTGAAAAGGTTTATGTGGATGACCTAAAAAAAGCTGTAGAATTGGTCATTCTACCCCGGTCAATCGTTACTGAGAACCCACCAGATCAACAAAACCAGCCTCCTCCCCCTCCGCCTCCTCCACAAAATCAAGAATCAGGCGAAGAACAGAATGAAGAGGAAGAACAAGAGGATGACAAGGATGAAGAGAATGAACAACAGCAAGAACAATTACCTGAAGAGTTTATCTTTGATGCTGAAGGTGGCTTGGTAGATGAAAAACTCCTCTTCTTTGCCCAACAAGCACAGAGACGCCGTGGGAGGGCTGGAAGGGCAAAAAATGTTATATTTTCCGAGGATAGAGGCCGATACATCAAGCCCATGCTTCCAAAGGGCCCTGTAAAGAGATTAGCTGTAGATGCAACCCTTAGAGCTGCTGCACCTTATCAAAAATTGCGAAGGGCAAAAGATTCTGGAAACAATAGAAAGGTATTTGTGGAGAAAACGGACATGAGGGCAAAGAGAATGGCACGTAAGGCAGGAGCATTGGTGATATTTGTTGTTGATGCAAGTGGAAGCATGGCATTGAACAGGATGCAGAATGCAAAAGGTGCAGCACTTAAGCTTCTGGCTGAAAGTTATACAAGCAGGGATCAGGTATCTATAATTCCATTCCGTGGAGATGCAGCTGAAGTTCTCCTGCCACCTTCTAGATCAATTTCAATGGCAAGGAAACGTCTTGAAAGGCTTCCATGTGGTGGAGGGTCCCCACTTGCTCATGGCTGTTAGAGTTGGACTAAATGCGGAGAAAAGTGGTGACGTTGGACGTATAATGATTGTTGCAATCACTGATGGCAGAGCCAATATATCATTGAAAAGGTCAACTGACCCTGAAGCTGCCGCAGCTACTGATGCCCCAAAACCTTCAGCACAAGAATTGAAGGATGAAATTCTTGAGGTGGCCGGAAAGATATATAAAGCAGGAATGTCTCTCCTTGTCATCGACACTGAAAATAAGTTTGTCTCAACGGGTTTTGCCAAGGAGATTGCTAGAGTTGCCCAAGGGAAGTATTATTATCTGCCAAATGCTTCAGACGCTGTTATCTCATCGGCAACAAAGGAAGCTTTATCAGCTTTGAAAAGTTCATGAAACCTTGTAAAAGTAAATCAGCCAAACTTGATTTCTTCCCCCTTTTTGTCGTAAATGTTAATGTAAATCATTCAACTATCTATGATGGGAAGAACGCATATTGTAATAGCCAAGAGCAATTTTGAATCATACCGATGCTAACAAACCATAGACATGATAATGATCAATGTTGGCTAATTCCAAAAGATTTAGGCTGAGCACTTCAAGATTTAAAGCATAATTACCACTGAGAAGTTCTAAGATACTCTCAACTGCTGAAATTCAACTTCAAAATTGTCAAATAATTCTATGTGGCGCATTGATATTTCTATTTTTAAAGCATAA
>Glyma11g01840.1 sequence type=CDS gene model=Glyma11g01840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTTTCGCTTTGGCATACACAGCATCTGGTTGTTGCTCAAACCTACAATTTCAGTCTCTGTTATTCGCTGCTGCTTCATTGAGATCAAAACCGTGTCTCTCTCTCTGCAACTCTACTTATCGACCCAAACGCATTCTCCAGCGTTCTCCAATTGTTGGCGCTCAGTCTGAAAATGGAGCTCTGGTTACTTCGGAGAAGCCCGACACTAATTACGGAAGACAATACTTCCCCCTCGCTGCTGTTGTAGGCCAAGATTCTATAAAAACTGCTCTTTTACTTGGTGCAATTGACCCCGGGGTTGGAGGAATTGCCATATCAGGAAAGCGAGGAACTGCCAAAACTGTAATGGCACGTGGATTGCATGCAATACTGCCTCCTATTGAAGTGGTAGAAGGTTCCATTGCCAATGCGGATCCAACCTGCCCAGAAGAGTGGGAAGATGGTCTTACAGAATGCCTGGAATATGATTCTACTGGAAATATTAAAACTCGTATTATCAAGTCTCCCTTTGTTCAGATTCCTCTTGGAGTCACAGAGGACAGACTCATTGGATCGGTTGATGTTGAGGAGTCTGTGAAAACAGGCACAACTGTTTTCCAGCCTGGTTTACTTGCAGAAGCTCATAGAGGTGTTTTATATGTTGATGAAATTAATCTTTTGGATGAGGGTATCAGTAATTTGCTCCTCAATGTATTGACTGAAGGAGTAAACACTGTTGAAAGAGAGGGGATCAGTTTCAAGCACCCTTGCAGGCCCCTTCTCATTGCCACCTATAACCCAGAAGAGGGTGCTGTTCGTGAACATCTGCTGGATCGCATTGCGATTAATTTAAGTGCAGATCTTCCAATGAGTTTTGAAAACCGTGTTGCAGCTGTTGGAATTGCCACAGAGTTTCAGGAGAACAGTAGCCAAGTATTTGAGATGGTCGAAGAGGAAACAGACAATGCAAAAACTCAGATCATCTTAGCCAGAGAGTATCTAAAAGATGTTACTCTTAACAGAGAACAATTAAAATACCTGGTTATTGAAGCTTTACGGGGCGGTTGCCAGGGACATAGAGCTGAGCTATTTGCTGCCCGTGTTGCAAAGTGCTTAGCTGCTTTGGAGGGACGTGAAAAGGTTTATGTGGATGACCTAAAAAAAGCTGTAGAATTGGTCATTCTACCCCGGTCAATCGTTACTGAGAACCCACCAGATCAACAAAACCAGCCTCCTCCCCCTCCGCCTCCTCCACAAAATCAAGAATCAGGCGAAGAACAGAATGAAGAGGAAGAACAAGAGGATGACAAGGATGAAGAGAATGAACAACAGCAAGAACAATTACCTGAAGAGTTTATCTTTGATGCTGAAGGTGGCTTGGTAGATGAAAAACTCCTCTTCTTTGCCCAACAAGCACAGAGACGCCGTGGGAGGGCTGGAAGGGCAAAAAATGTTATATTTTCCGAGGATAGAGGCCGATACATCAAGCCCATGCTTCCAAAGGGCCCTGTAAAGAGATTAGCTGTAGATGCAACCCTTAGAGCTGCTGCACCTTATCAAAAATTGCGAAGGGCAAAAGATTCTGGAAACAATAGAAAGGTATTTGTGGAGAAAACGGACATGAGGGCAAAGAGAATGGCACGTAAGGCAGGAGCATTGGTGATATTTGTTGTTGATGCAAGTGGAAGCATGGCATTGAACAGGATGCAGAATGCAAAAGGTGCAGCACTTAAGCTTCTGGCTGAAAGTTATACAAGCAGGGATCAGGTATCTATAATTCCATTCCGTGGAGATGCAGCTGAAGTTCTCCTGCCACCTTCTAGATCAATTTCAATGGCAAGGAAACGTCTTGAAAGGCTTCCATGTGGTGGAGGGTCCCCACTTGCTCATGGTCTTACAACGGCTGTTAGAGTTGGACTAAATGCGGAGAAAAGTGGTGACGTTGGACGTATAATGATTGTTGCAATCACTGATGGCAGAGCCAATATATCATTGAAAAGGTCAACTGACCCTGAAGCTGCCGCAGCTACTGATGCCCCAAAACCTTCAGCACAAGAATTGAAGGATGAAATTCTTGAGGTGGCCGGAAAGATATATAAAGCAGGAATGTCTCTCCTTGTCATCGACACTGAAAATAAGTTTGTCTCAACGGGTTTTGCCAAGGAGATTGCTAGAGTTGCCCAAGGGAAGTATTATTATCTGCCAAATGCTTCAGACGCTGTTATCTCATCGGCAACAAAGGAAGCTTTATCAGCTTTGAAAAGTTCATGA >Glyma11g01840.2 sequence type=CDS gene model=Glyma11g01840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTTTCGCTTTGGCATACACAGCATCTGGTTGTTGCTCAAACCTACAATTTCAGTCTCTGTTATTCGCTGCTGCTTCATTGAGATCAAAACCGTGTCTCTCTCTCTGCAACTCTACTTATCGACCCAAACGCATTCTCCAGCGTTCTCCAATTGTTGGCGCTCAGTCTGAAAATGGAGCTCTGGTTACTTCGGAGAAGCCCGACACTAATTACGGAAGACAATACTTCCCCCTCGCTGCTGTTGTAGGCCAAGATTCTATAAAAACTGCTCTTTTACTTGGTGCAATTGACCCCGGGGTTGGAGGAATTGCCATATCAGGAAAGCGAGGAACTGCCAAAACTGTAATGGCACGTGGATTGCATGCAATACTGCCTCCTATTGAAGTGGTAGAAGGTTCCATTGCCAATGCGGATCCAACCTGCCCAGAAGAGTGGGAAGATGGTCTTACAGAATGCCTGGAATATGATTCTACTGGAAATATTAAAACTCGTATTATCAAGTCTCCCTTTGTTCAGATTCCTCTTGGAGTCACAGAGGACAGACTCATTGGATCGGTTGATGTTGAGGAGTCTGTGAAAACAGGCACAACTGTTTTCCAGCCTGGTTTACTTGCAGAAGCTCATAGAGGTGTTTTATATGTTGATGAAATTAATCTTTTGGATGAGGGTATCAGTAATTTGCTCCTCAATGTATTGACTGAAGGAGTAAACACTGTTGAAAGAGAGGGGATCAGTTTCAAGCACCCTTGCAGGCCCCTTCTCATTGCCACCTATAACCCAGAAGAGGGTGCTGTTCGTGAACATCTGCTGGATCGCATTGCGATTAATTTAAGTGCAGATCTTCCAATGAGTTTTGAAAACCGTGTTGCAGCTGTTGGAATTGCCACAGAGTTTCAGGAGAACAGTAGCCAAGTATTTGAGATGGTCGAAGAGGAAACAGACAATGCAAAAACTCAGATCATCTTAGCCAGAGAGTATCTAAAAGATGTTACTCTTAACAGAGAACAATTAAAATACCTGGTTATTGAAGCTTTACGGGGCGGTTGCCAGGGACATAGAGCTGAGCTATTTGCTGCCCGTGTTGCAAAGTGCTTAGCTGCTTTGGAGGGACGTGAAAAGGTTTATGTGGATGACCTAAAAAAAGCTGTAGAATTGGTCATTCTACCCCGGTCAATCGTTACTGAGAACCCACCAGATCAACAAAACCAGCCTCCTCCCCCTCCGCCTCCTCCACAAAATCAAGAATCAGGCGAAGAACAGAATGAAGAGGAAGAACAAGAGGATGACAAGGATGAAGAGAATGAACAACAGCAAGAACAATTACCTGAAGAGTTTATCTTTGATGCTGAAGGTGGCTTGGTAGATGAAAAACTCCTCTTCTTTGCCCAACAAGCACAGAGACGCCGTGGGAGGGCTGGAAGGGCAAAAAATGTTATATTTTCCGAGGATAGAGGCCGATACATCAAGCCCATGCTTCCAAAGGGCCCTGTAAAGAGATTAGCTGTAGATGCAACCCTTAGAGCTGCTGCACCTTATCAAAAATTGCGAAGGGCAAAAGATTCTGGAAACAATAGAAAGGTATTTGTGGAGAAAACGGACATGAGGGCAAAGAGAATGGCACGTAAGGCAGGAGCATTGGTGATATTTGTTGTTGATGCAAGTGGAAGCATGGCATTGAACAGGATGCAGAATGCAAAAGGTGCAGCACTTAAGCTTCTGGCTGAAAGTTATACAAGCAGGGATCAGGTATCTATAATTCCATTCCGTGGAGATGCAGCTGAAGTTCTCCTGCCACCTTCTAGATCAATTTCAATGGCAAGGAAACGTCTTGAAAGGCTTCCATGTGGTGGAGGGTCCCCACTTGCTCATGGCTGTTAG
>Glyma11g01840.1 sequence type=predicted peptide gene model=Glyma11g01840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGFALAYTASGCCSNLQFQSLLFAAASLRSKPCLSLCNSTYRPKRILQRSPIVGAQSENGALVTSEKPDTNYGRQYFPLAAVVGQDSIKTALLLGAIDPGVGGIAISGKRGTAKTVMARGLHAILPPIEVVEGSIANADPTCPEEWEDGLTECLEYDSTGNIKTRIIKSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYVDEINLLDEGISNLLLNVLTEGVNTVEREGISFKHPCRPLLIATYNPEEGAVREHLLDRIAINLSADLPMSFENRVAAVGIATEFQENSSQVFEMVEEETDNAKTQIILAREYLKDVTLNREQLKYLVIEALRGGCQGHRAELFAARVAKCLAALEGREKVYVDDLKKAVELVILPRSIVTENPPDQQNQPPPPPPPPQNQESGEEQNEEEEQEDDKDEENEQQQEQLPEEFIFDAEGGLVDEKLLFFAQQAQRRRGRAGRAKNVIFSEDRGRYIKPMLPKGPVKRLAVDATLRAAAPYQKLRRAKDSGNNRKVFVEKTDMRAKRMARKAGALVIFVVDASGSMALNRMQNAKGAALKLLAESYTSRDQVSIIPFRGDAAEVLLPPSRSISMARKRLERLPCGGGSPLAHGLTTAVRVGLNAEKSGDVGRIMIVAITDGRANISLKRSTDPEAAAATDAPKPSAQELKDEILEVAGKIYKAGMSLLVIDTENKFVSTGFAKEIARVAQGKYYYLPNASDAVISSATKEALSALKSS* >Glyma11g01840.2 sequence type=predicted peptide gene model=Glyma11g01840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGFALAYTASGCCSNLQFQSLLFAAASLRSKPCLSLCNSTYRPKRILQRSPIVGAQSENGALVTSEKPDTNYGRQYFPLAAVVGQDSIKTALLLGAIDPGVGGIAISGKRGTAKTVMARGLHAILPPIEVVEGSIANADPTCPEEWEDGLTECLEYDSTGNIKTRIIKSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYVDEINLLDEGISNLLLNVLTEGVNTVEREGISFKHPCRPLLIATYNPEEGAVREHLLDRIAINLSADLPMSFENRVAAVGIATEFQENSSQVFEMVEEETDNAKTQIILAREYLKDVTLNREQLKYLVIEALRGGCQGHRAELFAARVAKCLAALEGREKVYVDDLKKAVELVILPRSIVTENPPDQQNQPPPPPPPPQNQESGEEQNEEEEQEDDKDEENEQQQEQLPEEFIFDAEGGLVDEKLLFFAQQAQRRRGRAGRAKNVIFSEDRGRYIKPMLPKGPVKRLAVDATLRAAAPYQKLRRAKDSGNNRKVFVEKTDMRAKRMARKAGALVIFVVDASGSMALNRMQNAKGAALKLLAESYTSRDQVSIIPFRGDAAEVLLPPSRSISMARKRLERLPCGGGSPLAHGC*
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