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Report for Sequence Feature Glyma11g01830
Feature Type: gene_model
Chromosome: Gm11
Start: 1104007
stop: 1108983
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma11g01830
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G12410 AT
Annotation by Michelle Graham. TAIR10: THUMP domain-containing protein | chr5:4021974-4023950 REVERSE LENGTH=376
SoyBase E_val: 6.00E-131 ISS
GO:0000085 GO-bp
Annotation by Michelle Graham. GO Biological Process: G2 phase of mitotic cell cycle
SoyBase N/A ISS
GO:0000394 GO-bp
Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation
SoyBase N/A ISS
GO:0006310 GO-bp
Annotation by Michelle Graham. GO Biological Process: DNA recombination
SoyBase N/A ISS
GO:0006406 GO-bp
Annotation by Michelle Graham. GO Biological Process: mRNA export from nucleus
SoyBase N/A ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0009086 GO-bp
Annotation by Michelle Graham. GO Biological Process: methionine biosynthetic process
SoyBase N/A ISS
GO:0009560 GO-bp
Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation
SoyBase N/A ISS
GO:0009640 GO-bp
Annotation by Michelle Graham. GO Biological Process: photomorphogenesis
SoyBase N/A ISS
GO:0009793 GO-bp
Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy
SoyBase N/A ISS
GO:0009845 GO-bp
Annotation by Michelle Graham. GO Biological Process: seed germination
SoyBase N/A ISS
GO:0009909 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of flower development
SoyBase N/A ISS
GO:0009933 GO-bp
Annotation by Michelle Graham. GO Biological Process: meristem structural organization
SoyBase N/A ISS
GO:0010048 GO-bp
Annotation by Michelle Graham. GO Biological Process: vernalization response
SoyBase N/A ISS
GO:0010074 GO-bp
Annotation by Michelle Graham. GO Biological Process: maintenance of meristem identity
SoyBase N/A ISS
GO:0010162 GO-bp
Annotation by Michelle Graham. GO Biological Process: seed dormancy process
SoyBase N/A ISS
GO:0010182 GO-bp
Annotation by Michelle Graham. GO Biological Process: sugar mediated signaling pathway
SoyBase N/A ISS
GO:0010228 GO-bp
Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem
SoyBase N/A ISS
GO:0010332 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to gamma radiation
SoyBase N/A ISS
GO:0016567 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein ubiquitination
SoyBase N/A ISS
GO:0019915 GO-bp
Annotation by Michelle Graham. GO Biological Process: lipid storage
SoyBase N/A ISS
GO:0032204 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of telomere maintenance
SoyBase N/A ISS
GO:0043247 GO-bp
Annotation by Michelle Graham. GO Biological Process: telomere maintenance in response to DNA damage
SoyBase N/A ISS
GO:0050826 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to freezing
SoyBase N/A ISS
GO:0051604 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein maturation
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005829 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytosol
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PTHR13452 Panther
THUMP DOMAIN CONTAINING PROTEIN 1-RELATED
JGI ISS
PF02926 PFAM
THUMP domain
JGI ISS
UniRef100_G7K999 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: THUMP domain containing protein n=2 Tax=Medicago truncatula RepID=G7K999_MEDTR
SoyBase E_val: 1.00E-180 ISS
UniRef100_I1LG63 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LG63_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma11g01830
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma11g01830
Paralog Evidence Comments
Glyma01g43640 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma11g01830 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.11g015900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma11g01830
Transcripts of Glyma11g01830
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma11g01830.2 sequence type=transcript gene model=Glyma11g01830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
TTTCCAATTACCTTTTTATCCTAAAATATATTAAAACGCTTTTATTTGTGTTTATTTATTTAGAAGTTAAAGTCAATAACTCAATACTATCTACTATATTTTAAGTATAGTTTTATTTTAACTTAATTCTTAATATAATAATAGAGATTGTAGAAATTAGCAGTAACTGGTGTTGAGTAGCTTTGGTCCCTTGTTTTTGTTGTGCTATGGCGCCTGATGCTGCCGCCGCCAACGGCAAAAAGAGAAGACGCTATCTTCCTCATAACAAGGCAGTGAAGAAGAAGGGTTCGTACCCTCTGCGGCCAGGCGTGCAAGGTTTTTTCATCACTTGCGATGGCGGCAGAGAACACCAAGCCTCTCGTGAAGCTCTCAATATTCTCGATTCCTTTTATGAAGAGCTAGTTGATGGGGAACATTCAAGTGTAAAGGAGTTACCCAGCAAACCTTTAAATAAAAAAATCACGTTTGCAGATTCTGACTCTTCTAGTAGCGATGATGATGATGATGATGATGAGGAGGAGGAGGTGCAGGAGGGGGATGAGGAAAAGGGGGACAAAAAGCCAAAATTGGATACTTCTAATGACGACAACACCAGTCACGATGATGGAGTACCTGAAAAATCAGATCCTCATAAAGTTGATGAACCACACACTCAGGAAGTAGATGAAACTTGTGATAATAAAGGTGCGAATGACAATCTTAAGACTACTAAAGGGACAGCTGATGGTCTACCAGCTGTGAAACAGTGCTGCAAAACAAACGTGCCTGCATGTAATTTTAGTGACAAAGTGGAACAGAAGTCTATTGATAAGTTAATTGAAGAAGAATTCAAAGAATTGGGAGACAAGAATAAGAGGTGCTTTGTCAAGCTTGATTCTGGTTGTAATGGTGTAGTATTTGTTCAAATGCGGAAGAAAGATGGAGACCGAAGCCCCAAGGATATAGTTCATCGGATAGTGACATCAGCAGCATCAACAGGGAAACATATGTCAAGGTTTATTTTGAGAATTTTGCCAATTGAAATCGCATGTTATGCTTCAAAGGAGGAAATTTCAAGAGCAATCAAGCCTCTTGTGGAACAGTACTTTCCTGTGGAAACTCAAAATCCACACAAGTTTGCTGTACTGTATGAGGCACGGGCAAATACTGGTGTTGACAGGATGGAAATCATCGATGCTGTGGCAAAGTCAGTTCCTGGACCCCATAAAGTTGATCTAAAAAATCCTGATAAAACTATAGTAGTTGAAATTGCCAGGACTGTGTGCTTGATCGGGGTCATCGAGAAATACAAGGAACTTTCCAAGTATAATCTGAGGCAGTTAACATCTCGTAAAGACTGAGCCTTCCAGGCAACCCGTATAGATGTCGTTCTTGCAGCATTATAATGGCTTAACGTATTTAGGCTTCCCCTTAACTTCATGTTGATACTCTGGTCTGTGACTGTTGTTGTCATTTTGGAAAGTGTTGAAGATTAGATGATGACTCTTGCAGCTAGTCCTTTGACTAAGTGTAGTTAGCAAGTTCTCACAAATCAAACGAGAAAAGAAACCCTTACGCGGCAGTATAGATCCATTAAAATATCATCATTTGAATTTACAATGGTTTTTTAATAAACTTTAAATTGAATTTCAGCCGTTGAGATTCATAAAAATTGTAAT
Coding sequences of Glyma11g01830
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma11g01830.1 sequence type=CDS gene model=Glyma11g01830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCGCCTGATGCTGCCGCCGCCAACGGCAAAAAGAGAAGACGCTATCTTCCTCATAACGTCTCTCTTCTCTTGTCTTTTGTGGCTTTTGTTTGCACTTCTAAGTTTCTTCTCTTTATTTTGTTGCCGAGGACTGAGGTTGTTGTTTTCATGAATTTTTTTCAGAAGGCAGTGAAGAAGAAGGGTTCGTACCCTCTGCGGCCAGGCGTGCAAGGTTTTTTCATCACTTGCGATGGCGGCAGAGAACACCAAGCCTCTCGTGAAGCTCTCAATATTCTCGATTCCTTTTATGAAGAGCTAGTTGATGGGGAACATTCAAGTGTAAAGGAGTTACCCAGCAAACCTTTAAATAAAAAAATCACGTTTGCAGATTCTGACTCTTCTAGTAGCGATGATGATGATGATGATGATGAGGAGGAGGAGGTGCAGGAGGGGGATGAGGAAAAGGGGGACAAAAAGCCAAAATTGGATACTTCTAATGACGACAACACCAGTCACGATGATGGAGTACCTGAAAAATCAGATCCTCATAAAGTTGATGAACCACACACTCAGGAAGTAGATGAAACTTGTGATAATAAAGGTGCGAATGACAATCTTAAGACTACTAAAGGGACAGCTGATGGTCTACCAGCTGTGAAACAGTGCTGCAAAACAAACGTGCCTGCATGTAATTTTAGTGACAAAGTGGAACAGAAGTCTATTGATAAGTTAATTGAAGAAGAATTCAAAGAATTGGGAGACAAGAATAAGAGGTGCTTTGTCAAGCTTGATTCTGGTTGTAATGGTGTAGTATTTGTTCAAATGCGGAAGAAAGATGGAGACCGAAGCCCCAAGGATATAGTTCATCGGATAGTGACATCAGCAGCATCAACAGGGAAACATATGTCAAGGTTTATTTTGAGAATTTTGCCAATTGAAATCGCATGTTATGCTTCAAAGGAGGAAATTTCAAGAGCAATCAAGCCTCTTGTGGAACAGTACTTTCCTGTGGAAACTCAAAATCCACACAAGTTTGCTGTACTGTATGAGGCACGGGCAAATACTGGTGTTGACAGGATGGAAATCATCGATGCTGTGGCAAAGTCAGTTCCTGGACCCCATAAAGTTGATCTAAAAAATCCTGATAAAACTATAGTAGTTGAAATTGCCAGGACTGTGTGCTTGATCGGGGTCATCGAGAAATACAAGGAACTTTCCAAGTATAATCTGAGGCAGTTAACATCTCGTAAAGACTGA
>Glyma11g01830.2 sequence type=CDS gene model=Glyma11g01830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCGCCTGATGCTGCCGCCGCCAACGGCAAAAAGAGAAGACGCTATCTTCCTCATAACAAGGCAGTGAAGAAGAAGGGTTCGTACCCTCTGCGGCCAGGCGTGCAAGGTTTTTTCATCACTTGCGATGGCGGCAGAGAACACCAAGCCTCTCGTGAAGCTCTCAATATTCTCGATTCCTTTTATGAAGAGCTAGTTGATGGGGAACATTCAAGTGTAAAGGAGTTACCCAGCAAACCTTTAAATAAAAAAATCACGTTTGCAGATTCTGACTCTTCTAGTAGCGATGATGATGATGATGATGATGAGGAGGAGGAGGTGCAGGAGGGGGATGAGGAAAAGGGGGACAAAAAGCCAAAATTGGATACTTCTAATGACGACAACACCAGTCACGATGATGGAGTACCTGAAAAATCAGATCCTCATAAAGTTGATGAACCACACACTCAGGAAGTAGATGAAACTTGTGATAATAAAGGTGCGAATGACAATCTTAAGACTACTAAAGGGACAGCTGATGGTCTACCAGCTGTGAAACAGTGCTGCAAAACAAACGTGCCTGCATGTAATTTTAGTGACAAAGTGGAACAGAAGTCTATTGATAAGTTAATTGAAGAAGAATTCAAAGAATTGGGAGACAAGAATAAGAGGTGCTTTGTCAAGCTTGATTCTGGTTGTAATGGTGTAGTATTTGTTCAAATGCGGAAGAAAGATGGAGACCGAAGCCCCAAGGATATAGTTCATCGGATAGTGACATCAGCAGCATCAACAGGGAAACATATGTCAAGGTTTATTTTGAGAATTTTGCCAATTGAAATCGCATGTTATGCTTCAAAGGAGGAAATTTCAAGAGCAATCAAGCCTCTTGTGGAACAGTACTTTCCTGTGGAAACTCAAAATCCACACAAGTTTGCTGTACTGTATGAGGCACGGGCAAATACTGGTGTTGACAGGATGGAAATCATCGATGCTGTGGCAAAGTCAGTTCCTGGACCCCATAAAGTTGATCTAAAAAATCCTGATAAAACTATAGTAGTTGAAATTGCCAGGACTGTGTGCTTGATCGGGGTCATCGAGAAATACAAGGAACTTTCCAAGTATAATCTGAGGCAGTTAACATCTCGTAAAGACTGA
Predicted protein sequences of Glyma11g01830
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma11g01830.1 sequence type=predicted peptide gene model=Glyma11g01830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAPDAAAANGKKRRRYLPHNVSLLLSFVAFVCTSKFLLFILLPRTEVVVFMNFFQKAVKKKGSYPLRPGVQGFFITCDGGREHQASREALNILDSFYEELVDGEHSSVKELPSKPLNKKITFADSDSSSSDDDDDDDEEEEVQEGDEEKGDKKPKLDTSNDDNTSHDDGVPEKSDPHKVDEPHTQEVDETCDNKGANDNLKTTKGTADGLPAVKQCCKTNVPACNFSDKVEQKSIDKLIEEEFKELGDKNKRCFVKLDSGCNGVVFVQMRKKDGDRSPKDIVHRIVTSAASTGKHMSRFILRILPIEIACYASKEEISRAIKPLVEQYFPVETQNPHKFAVLYEARANTGVDRMEIIDAVAKSVPGPHKVDLKNPDKTIVVEIARTVCLIGVIEKYKELSKYNLRQLTSRKD*
>Glyma11g01830.2 sequence type=predicted peptide gene model=Glyma11g01830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAPDAAAANGKKRRRYLPHNKAVKKKGSYPLRPGVQGFFITCDGGREHQASREALNILDSFYEELVDGEHSSVKELPSKPLNKKITFADSDSSSSDDDDDDDEEEEVQEGDEEKGDKKPKLDTSNDDNTSHDDGVPEKSDPHKVDEPHTQEVDETCDNKGANDNLKTTKGTADGLPAVKQCCKTNVPACNFSDKVEQKSIDKLIEEEFKELGDKNKRCFVKLDSGCNGVVFVQMRKKDGDRSPKDIVHRIVTSAASTGKHMSRFILRILPIEIACYASKEEISRAIKPLVEQYFPVETQNPHKFAVLYEARANTGVDRMEIIDAVAKSVPGPHKVDLKNPDKTIVVEIARTVCLIGVIEKYKELSKYNLRQLTSRKD*