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Report for Sequence Feature Glyma11g01700

Feature Type:gene_model
Chromosome:Gm11
Start:1017446
stop:1018737
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma11g01700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G71520AT Annotation by Michelle Graham. TAIR10: Integrase-type DNA-binding superfamily protein | chr1:26938612-26939043 FORWARD LENGTH=143 SoyBaseE_val: 8.00E-39ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0010200GO-bp Annotation by Michelle Graham. GO Biological Process: response to chitin SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
PF00847PFAM AP2 domain JGI ISS
UniRef100_G7K978UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ethylene-responsive transcription factor ERF019 n=1 Tax=Medicago truncatula RepID=G7K978_MEDTR SoyBaseE_val: 1.00E-59ISS
UniRef100_UPI000233C6DEUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233C6DE related cluster n=1 Tax=unknown RepID=UPI000233C6DE SoyBaseE_val: 3.00E-123ISS

Expression Patterns of Glyma11g01700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g01700
ParalogEvidenceComments
Glyma01g44230 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g01700 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g014800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma11g01700
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma11g01700
>Glyma11g01700.1   sequence type=CDS   gene model=Glyma11g01700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTAGGAGTTCGGCGATGCATGGAATTACAAGCACAAACAACAAGTTGAAGGGAGTTCGGCGTCGAAAATGGGGCAAATGGGTGTCGGAGATTCGTGTTCCGGGCACGCAAGAGCGTTTGTGGTTGGGAACCTACGCCACGCCGGAGGCTGCCGCGGTGGCTCACGACGTTGCCGTCTACTGTCTAAGTAGGCCTTCTTCGTTGGACAAACTTAACTTCCCCGAAACCTTGTCTTCGTACAGTGTTCAGCTCAGGGACATGTCTCCGAGGTCTGTGCAGAAGGTGGCTTCCGATGTTGGCATGGATGTTGATGCAAGAAACATTGTTGCGGGCAAAACTTCAACGGTGGGGGCAGAAACTAATTGCGAGAGTGATGAGAGGACTAGTACTGCGTCTGTGTGTAATGTTGTTGGAGAAGGTGGTGCTGATCATTCGGATGTGTTTTGGTGGGATGATGATGGTGGGTCTTGGCATGGAAGTGGTGGAGATTCTACGGAAAGGGATGCCTTGAGCATTTCCATTGAAGATTATCTTTAG
Predicted protein sequences of Glyma11g01700
>Glyma11g01700.1   sequence type=predicted peptide   gene model=Glyma11g01700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSRSSAMHGITSTNNKLKGVRRRKWGKWVSEIRVPGTQERLWLGTYATPEAAAVAHDVAVYCLSRPSSLDKLNFPETLSSYSVQLRDMSPRSVQKVASDVGMDVDARNIVAGKTSTVGAETNCESDERTSTASVCNVVGEGGADHSDVFWWDDDGGSWHGSGGDSTERDALSISIEDYL*






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