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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G71480 | AT | Annotation by Michelle Graham. TAIR10: Nuclear transport factor 2 (NTF2) family protein | chr1:26932079-26933086 FORWARD LENGTH=216 | SoyBase | E_val: 4.00E-79 | ISS |
| GO:0006606 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into nucleus | SoyBase | N/A | ISS |
| GO:0006810 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transport | SoyBase | N/A | ISS |
| GO:0015996 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chlorophyll catabolic process | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009535 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane | SoyBase | N/A | ISS |
| GO:0008565 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein transporter activity | SoyBase | N/A | ISS |
| PF02136 | PFAM | Nuclear transport factor 2 (NTF2) domain | JGI | ISS | |
| UniRef100_B9SPW4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein transporter, putative n=1 Tax=Ricinus communis RepID=B9SPW4_RICCO | SoyBase | E_val: 1.00E-76 | ISS |
| UniRef100_I1LG46 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LG46_SOYBN | SoyBase | E_val: 5.00E-166 | ISS |
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Glyma11g01650 not represented in the dataset |
Glyma11g01650 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g44150 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g014300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g01650.2 sequence type=transcript gene model=Glyma11g01650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTAAAATCCGTGGTTCTGGTGTCGTGGTAAGGAGGTAGTTGGTGTTGTTAGTTAATAGATGATAGCAGGAGATTTGAAGCAAAAATTGAGCATAAAATGTTTATAATTGTTTCCACAACTTCCACTTGCTTGCTTTTGAATAACTCAGCTTCTTCACCTTTGCTTCTGTCTTGTTGTATCGATTCAGTTAAATATGGCTCGTTTGCTCTTCCCAAGTTTGAAAGAAGAAGAAGAAGCAAATGGAGAGCCGTTGATGGGAGTGGCGAGAAGCAATCAGCTGTTACCGTAGCAGCAACTACCACAAGTACTTTTGATGATGATAACGACGTTGTTGACTCAGCTTCAGCTGTGTTGAAGAATTTCTATGGAGGAATCAATGCGCATGACGTGGATTCTGTAGAGTACCTTATCGCTGAGAATTGTGTGTATGAAGATCTTGTCTTTCCCCGACCCTTTGTTGGTCGTAAGGAAATTCTAGAGTTCTTCAAAAAATTCACTAATTCTACCAGCAAAGATCTGCAGTTTGTTATTGATGATTTGTCTACTGAGGACTCCTCATCTGTTGGGGTGATATGGCATTTAGAATGGAAGGGAAAACCTTTTCCCTTTAGCAAAGGGTGCAGTTTTTATCGTCTAGAGGTGATCAATGGCAAAAGGCAAATAACATATGGGCGCGACTGTGTTGAACCTGCAATCAAGCCTGGGGATGCGACTTTGGGATAAGAGACGAAGGAAAAGCCAAACTCTAAAAAACTCATTTAACTACCAAAAGTTAATAATCTAGCAGGAGCCAGATTAATTGCTCAATATCAATCCAAATCTTGTCTCAAAACCTTTGCTTGCTCTTAATTATAAACCAAAATTATGTACTGTAGTCTGTAGGCATTTAGTCTTAAATTTCCCATTTAGTCTTGGTGTGTAGTTATTGGATAAGAGCAAGGAAATACTGATGGTGAATAAAAACATATATGTTGTCAAGGCATGTGCGTAGGTGTGGATGAGTGTGTTTTTGGCCATTGACTGAGTTGAATTTTCTTGGAAAACTATTTATATGCAGGCAGCGATCAGGAGTGTAACATGGCTACTGCAGCAATTTCCTCAGTTGGCAAACTGGTTATAGTGAAAGATTCTACATTATTTTGGAAGCGCATAATGTGCCTCCTTTTGCCCTTACAAAATTAGTCTTTAAAATTTGATCGTAGTTGGATTGTATAACATAAAACTATTGCACGGCAGGTGAAAGTGTTGTGTGTGTATATACAAGATATGGGACATATGTGTCAGGATGAATTGACATTATAGCTGTCAAATTTTTACACTTATATAATAGCTTTTTGTTTGAAGAAGAAGTTCTTACAATTATAAATAAGAGGAATTATTTTCTTTCCTCCTCATATATTGTGAAATTGATTATTCTACGTGAGAAGTCATTG >Glyma11g01650.3 sequence type=transcript gene model=Glyma11g01650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTAAAATCCGTGGTTCTGGTGTCGTGGTAAGGAGGTAGTTGGTGTTGTTAGTTAATAGATGATAGCAGGAGATTTGAAGCAAAAATTGAGCATAAAATGTTTATAATTGTTTCCACAACTTCCACTTGCTTGCTTTTGAATAACTCAGCTTCTTCACCTTTGCTTCTGTCTTGTTGTATCGATTCAGTTAAATATGGCTCGTTTGCTCTTCCCAAGTTTGAAAGAAGAAGAAGAAGCAAATGGAGAGCCGTTGATGGGAGTGGCGAGAAGCAATCAGCTGTTACCGTAGCAGCAACTACCACAAGTACTTTTGATGATGATAACGACGTTGTTGACTCAGCTTCAGCTGTGTTGAAGAATTTCTATGGAGGAATCAATGCGCATGACGTGGATTCTGTAGAGTACCTTATCGCTGAGAATTGTGTGTATGAAGATCTTGTCTTTCCCCGACCCTTTGTTGGTCGTAAGTTTGTTATTGATGATTTGTCTACTGAGGACTCCTCATCTGTTGGGGTGATATGGCATTTAGAATGGAAGGGAAAACCTTTTCCCTTTAGCAAAGGGTGCAGTTTTTATCGTCTAGAGGTGATCAATGGCAAAAGGCAAATAACATATGGGCGCGACTGTGTTGAACCTGCAATCAAGCCTGGGGATGCGACTTTGGCAGCGATCAGGAGTGTAACATGGCTACTGCAGCAATTTCCTCAGTTGGCAAACTGGTTATAGTGAAAGATTCTACATTATTTTGGAAGCGCATAATGTGCCTCCTTTTGCCCTTACAAAATTAGTCTTTAAAATTTGATCGTAGTTGGATTGTATAACATAAAACTATTGCACGGCAGGTGAAAGTGTTGTGTGTGTATATACAAGATATGGGACATATGTGTCAGGATGAATTGACATTATAGCTGTCAAATTTTTACACTTATATAATAGCTTTTTGTTTGAAGAAGAAGTTCTTACAATTATAAATAAGAGGAATTATTTTCTTTCCTCCTCATATATTGTGAAATTGATTATTCTACGTGAGAAGTCATTG
>Glyma11g01650.1 sequence type=CDS gene model=Glyma11g01650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTTATAATTGTTTCCACAACTTCCACTTGCTTGCTTTTGAATAACTCAGCTTCTTCACCTTTGCTTCTGTCTTGTTGTATCGATTCAGTTAAATATGGCTCGTTTGCTCTTCCCAAGTTTGAAAGAAGAAGAAGAAGCAAATGGAGAGCCGTTGATGGGAGTGGCGAGAAGCAATCAGCTGTTACCGTAGCAGCAACTACCACAAGTACTTTTGATGATGATAACGACGTTGTTGACTCAGCTTCAGCTGTGTTGAAGAATTTCTATGGAGGAATCAATGCGCATGACGTGGATTCTGTAGAGTACCTTATCGCTGAGAATTGTGTGTATGAAGATCTTGTCTTTCCCCGACCCTTTGTTGGTCGTAAGGAAATTCTAGAGTTCTTCAAAAAATTCACTAATTCTACCAGCAAAGATCTGCAGTTTGTTATTGATGATTTGTCTACTGAGGACTCCTCATCTGTTGGGGTGATATGGCATTTAGAATGGAAGGGAAAACCTTTTCCCTTTAGCAAAGGGTGCAGTTTTTATCGTCTAGAGGTGATCAATGGCAAAAGGCAAATAACATATGGGCGCGACTGTGTTGAACCTGCAATCAAGCCTGGGGATGCGACTTTGGCAGCGATCAGGAGTGTAACATGGCTACTGCAGCAATTTCCTCAGTTGGCAAACTGGTTATAG >Glyma11g01650.2 sequence type=CDS gene model=Glyma11g01650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTTATAATTGTTTCCACAACTTCCACTTGCTTGCTTTTGAATAACTCAGCTTCTTCACCTTTGCTTCTGTCTTGTTGTATCGATTCAGTTAAATATGGCTCGTTTGCTCTTCCCAAGTTTGAAAGAAGAAGAAGAAGCAAATGGAGAGCCGTTGATGGGAGTGGCGAGAAGCAATCAGCTGTTACCGTAGCAGCAACTACCACAAGTACTTTTGATGATGATAACGACGTTGTTGACTCAGCTTCAGCTGTGTTGAAGAATTTCTATGGAGGAATCAATGCGCATGACGTGGATTCTGTAGAGTACCTTATCGCTGAGAATTGTGTGTATGAAGATCTTGTCTTTCCCCGACCCTTTGTTGGTCGTAAGGAAATTCTAGAGTTCTTCAAAAAATTCACTAATTCTACCAGCAAAGATCTGCAGTTTGTTATTGATGATTTGTCTACTGAGGACTCCTCATCTGTTGGGGTGATATGGCATTTAGAATGGAAGGGAAAACCTTTTCCCTTTAGCAAAGGGTGCAGTTTTTATCGTCTAGAGGTGATCAATGGCAAAAGGCAAATAACATATGGGCGCGACTGTGTTGAACCTGCAATCAAGCCTGGGGATGCGACTTTGGGATAA >Glyma11g01650.3 sequence type=CDS gene model=Glyma11g01650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTTATAATTGTTTCCACAACTTCCACTTGCTTGCTTTTGAATAACTCAGCTTCTTCACCTTTGCTTCTGTCTTGTTGTATCGATTCAGTTAAATATGGCTCGTTTGCTCTTCCCAAGTTTGAAAGAAGAAGAAGAAGCAAATGGAGAGCCGTTGATGGGAGTGGCGAGAAGCAATCAGCTGTTACCGTAGCAGCAACTACCACAAGTACTTTTGATGATGATAACGACGTTGTTGACTCAGCTTCAGCTGTGTTGAAGAATTTCTATGGAGGAATCAATGCGCATGACGTGGATTCTGTAGAGTACCTTATCGCTGAGAATTGTGTGTATGAAGATCTTGTCTTTCCCCGACCCTTTGTTGGTCGTAAGTTTGTTATTGATGATTTGTCTACTGAGGACTCCTCATCTGTTGGGGTGATATGGCATTTAGAATGGAAGGGAAAACCTTTTCCCTTTAGCAAAGGGTGCAGTTTTTATCGTCTAGAGGTGATCAATGGCAAAAGGCAAATAACATATGGGCGCGACTGTGTTGAACCTGCAATCAAGCCTGGGGATGCGACTTTGGCAGCGATCAGGAGTGTAACATGGCTACTGCAGCAATTTCCTCAGTTGGCAAACTGGTTATAG
>Glyma11g01650.1 sequence type=predicted peptide gene model=Glyma11g01650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFIIVSTTSTCLLLNNSASSPLLLSCCIDSVKYGSFALPKFERRRRSKWRAVDGSGEKQSAVTVAATTTSTFDDDNDVVDSASAVLKNFYGGINAHDVDSVEYLIAENCVYEDLVFPRPFVGRKEILEFFKKFTNSTSKDLQFVIDDLSTEDSSSVGVIWHLEWKGKPFPFSKGCSFYRLEVINGKRQITYGRDCVEPAIKPGDATLAAIRSVTWLLQQFPQLANWL* >Glyma11g01650.2 sequence type=predicted peptide gene model=Glyma11g01650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFIIVSTTSTCLLLNNSASSPLLLSCCIDSVKYGSFALPKFERRRRSKWRAVDGSGEKQSAVTVAATTTSTFDDDNDVVDSASAVLKNFYGGINAHDVDSVEYLIAENCVYEDLVFPRPFVGRKEILEFFKKFTNSTSKDLQFVIDDLSTEDSSSVGVIWHLEWKGKPFPFSKGCSFYRLEVINGKRQITYGRDCVEPAIKPGDATLG* >Glyma11g01650.3 sequence type=predicted peptide gene model=Glyma11g01650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFIIVSTTSTCLLLNNSASSPLLLSCCIDSVKYGSFALPKFERRRRSKWRAVDGSGEKQSAVTVAATTTSTFDDDNDVVDSASAVLKNFYGGINAHDVDSVEYLIAENCVYEDLVFPRPFVGRKFVIDDLSTEDSSSVGVIWHLEWKGKPFPFSKGCSFYRLEVINGKRQITYGRDCVEPAIKPGDATLAAIRSVTWLLQQFPQLANWL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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