Report for Sequence Feature Glyma11g01610
Feature Type: gene_model
Chromosome: Gm11
Start: 947792
stop: 955659
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma11g01610
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G10050 AT
Annotation by Michelle Graham. TAIR10: esterase/lipase/thioesterase family protein | chr4:6284620-6287186 REVERSE LENGTH=350
SoyBase E_val: 0 ISS
GO:0000394 GO-bp
Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation
SoyBase N/A ISS
GO:0009086 GO-bp
Annotation by Michelle Graham. GO Biological Process: methionine biosynthetic process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005773 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: vacuole
SoyBase N/A ISS
GO:0016787 GO-mf
Annotation by Michelle Graham. GO Molecular Function: hydrolase activity
SoyBase N/A ISS
KOG2564
KOG
Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold
JGI ISS
PTHR14189 Panther
PROTEIN PHOSPHATASE METHYLESTERASE-1 RELATED
JGI ISS
PF00561 PFAM
alpha/beta hydrolase fold
JGI ISS
UniRef100_I1LG41 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Protein phosphatase methylesterase 1 n=1 Tax=Glycine max RepID=I1LG41_SOYBN
SoyBase E_val: 0 ISS
UniRef100_I1LG41 UniRef
Annotation by Michelle Graham. Best UniRef hit: Protein phosphatase methylesterase 1 n=1 Tax=Glycine max RepID=I1LG41_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma11g01610
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma11g01610
Paralog Evidence Comments
Glyma01g44110 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma11g01610 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.11g014000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma11g01610
Transcripts of Glyma11g01610
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma11g01610.2 sequence type=transcript gene model=Glyma11g01610 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ACTAGAAGAAGTAAAGGTTGCTGCAAGTGTTTGGAGTTTGGAGTTTCGAGATCGAGAGAGAGAGAGAGAAAGCGCCATGGATTCTTCTTCACACATGGCTTCGCTTCCGGAAGATATCATCACCGACGAGCATTTACAACAGCAAACTCAACCCGCCTCAGCCTCTGCTTTCGCTTCCGTTCCTCAGCGCCCGCCAACTAAGAGCTCTTCAGAAAAATATGCACCTTTAGATTGGTCCGTGTATTTTGACAAAGAAGACGATGTTGCAATTCCCGAATCGAACGATGTTTTTCATGTTTACACGGCAGGAACTGAGGGTCCCGTTGTATTCTGTTTACACGGTGGTGGTTATTCTGGGCTTTCTTTTGCTGTCTCAGCAAGTAAAATTAAGGAGAAAGCTAGGGTAGTTGCAATGGACTTGAGAGGTCATGGGAAATCATTGACAGAAGATGATCTTGACTTATCTGTTGAGACTATGTGCAATGATGTATTGGCTGTTATAAAGGAATTATATAGCGACTCTCCTCCAGCCATCATTCTTGTTGGTCACAGCATGGGAGGATCAATTGCTGTGCATGTTGCTGCAAGGAGATCATTGTCTGCCTTGGCGGGGTTGGTTGTTGTGGATGTTGTAGAGGGAACAGCAATGGCTTCACTAATTCATATGCAGAAAATCCTATCAAGCAGGATGCAACATTTTTCAAGCATTGAAAAAGCTATTGAATGGAGTGTCAGGGGTGGCTCTTTAAGAAATATTGATTCTGCTCGTGTATCAATCCCTGCCACATTAAAGTATGACCATTCAAAGAAATGTTATCTTTACCGAACTGAGCTGGAAAAGACTGAACAATATTGGAAAGGCTGGTATGAAGGCCTCTCAGATAAATTTTTGTCATGTCCTGTGCCAAAACTGTTGTTATTAGCCGGAACAGATAGATTGGACAGGTCTCTCACAATTGGTCAAATGCAAGGGAAGTTTCAAATGGTAGTTGTAAGGCATACAGGGCATGCTATTCAGATGTACCTGATGAATTTGCAACTCTGATTGTTAACTTCATTTCTCGTAACCGAATAGGCCCTCATGGAATTGAGATACCTGGCCTTCGCAAGCCAGCCTTTTCCAAACCTTGAATCTGGTATTAGATAAACCAAGAATGACCACCACTGCAAGATGAAGATGATGAATTTCTTACTTTGACATTCCTTTAGTTTTATACCGTGCTTCTATGTTTTGACGGGGGAGGAGGGTAGGTGAAGCGATTATATATTATATATTATATATTTCAGACTATTATCAAATGTAATGAGCAATGGGTAAGATGGGATTGGACATAGATTTTCGCTCATAGCTAGCAACGTTAGGTGTCCCTTGCTTTGAGTGTTTTTGGTTTTCATCTTTAAAGAAAATAAAAAATAAAAGTAAAAATACGTTCGCTTAAAATTTAGAAATTAT
>Glyma11g01610.3 sequence type=transcript gene model=Glyma11g01610 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATTAGATAATTTATTTATCACCCACATTAATCTTACAAGGTTTGAGCAAACAATATATTCCTAGGAATGTTGTTGCAATATCTAACATGTAAAGATCTTGGGGCATAAAATAAAATAAAAATAAAAAATGTTTGACACTAGAAGAAGTAAAGGTTGCTGCAAGTGTTTGGAGTTTGGAGTTTCGAGATCGAGAGAGAGAGAGAGAAAGCGCCATGGATTCTTCTTCACACATGGCTTCGCTTCCGGAAGATATCATCACCGACGAGCATTTACAACAGCAAACTCAACCCGCCTCAGCCTCTGCTTTCGCTTCCGTTCCTCAGCGCCCGCCAACTAAGAGCTCTTCAGAAAAATATGCACCTTTAGATTGGTCCGTGTATTTTGACAAAGAAGACGATGTTGCAATTCCCGAATCGAACGATGTTTTTCATGTTTACACGGCAGGAACTGAGGGTCCCGTTGTATTCTGTTTACACGGTGGTGGTTATTCTGGGCTTTCTTTTGCTGTCTCAGCAAGTAAAATTAAGGAGAAAGCTAGGGTAGTTGCAATGGACTTGAGAGGTCATGGGAAATCATTGACAGAAGATGATCTTGACTTATCTGTTGAGACTATGTGCAATGATGTATTGGCTGTTATAAAGGAATTATATAGCGACTCTCCTCCAGCCATCATTCTTGTTGGTCACAGCATGGGAGGATCAATTGCTGTGCATGTTGCTGCAAGGAGATCATTGTCTGCCTTGGCGGGGTTGGTTGTTGTGGATGTTGTAGAGGGAACAGCAATGGCTTCACTAATTCATATGCAGAAAATCCTATCAAGCAGGATGCAACATTTTTCAAGCATTGAAAAAGCTATTGAATGGAGTGTCAGGGGTGGCTCTTTAAGAAATATTGATTCTGCTCGTGTATCAATCCCTGCCACATTAAAGTATGACCATTCAAAGAAATGTTATCTTTACCGAACTGAGCTGGAAAAGACTGAACAATATTGGAAAGGCTGGTATGAAGGCCTCTCAGATAAATTTTTGTCATGTCCTGTGCCAAAACTGTTGTTATTAGCCGGAACAGATAGATTGGACAGGTCTCTCACAATTGGTCAAATGCAAGGGAAGTTTCAAATGGTAGTTGTAAGGCATACAGGGCATGCTATTCAGGAAGATGTACCTGATGAATTTGCAACTCTGATTGTTAACTTCATTTCTCGTAACCGAATAGGCCCTCATGGAATTGAGATACCTGGCCTTCGCAAGCCAGCCTTTTCCAAACCTTGAATCTGGTATTAGATAAACCAAGAATGACCACCACTGCAAGATGAAGATGATGAATTTCTTACTTTGACATTCCTTTAGTTTTATACCGTGCTTCTATGTTTTGACGGGGGAGGAGGGTAGGTGAAGCGATTATATATTATATATTATATATTTCAGACTATTATCAAATGTAATGAGCAATGGGTAAGATGGGATTGGACATAGATTTTCGCTCATAGCTAGCAACGTTAGGTGTCCCTTGCTTTGAGTGTTTTTGGTTTTCATCTTTAAAGAAAATAAAAAATAAAAGTAAAAATACGTTCGCTTAAAATTTAGAAATTATAA
Coding sequences of Glyma11g01610
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma11g01610.1 sequence type=CDS gene model=Glyma11g01610 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGATTCTTCTTCACACATGGCTTCGCTTCCGGAAGATATCATCACCGACGAGCATTTACAACAGCAAACTCAACCCGCCTCAGCCTCTGCTTTCGCTTCCGTTCCTCAGCGCCCGCCAACTAAGAGCTCTTCAGAAAAATATGCACCTTTAGATTGGTCCGTGTATTTTGACAAAGAAGACGATGTTGCAATTCCCGAATCGAACGATGTTTTTCATGTTTACACGGCAGGAACTGAGGGTCCCGTTGTATTCTGTTTACACGGTGGTGGTTATTCTGGGCTTTCTTTTGCTGTCTCAGCAAGTAAAATTAAGGAGAAAGCTAGGGTAGTTGCAATGGACTTGAGAGGTCATGGGAAATCATTGACAGAAGATGATCTTGACTTATCTGTTGAGACTATGTGCAATGATGTATTGGCTGTTATAAAGGAATTATATAGCGACTCTCCTCCAGCCATCATTCTTGTTGGTCACAGCTGTATAATATTATTAACTATCATCGGTAAAAAATTGCTTCATCATCAAAGCATGGGAGGATCAATTGCTGTGCATGTTGCTGCAAGGAGATCATTGTCTGCCTTGGCGGGGTTGGTTGTTGTGGATGTTGTAGAGGGAACAGCAATGGCTTCACTAATTCATATGCAGAAAATCCTATCAAGCAGGATGCAACATTTTTCAAGCATTGAAAAAGCTATTGAATGGAGTGTCAGGGGTGGCTCTTTAAGAAATATTGATTCTGCTCGTGTATCAATCCCTGCCACATTAAAGTATGACCATTCAAAGAAATGTTATCTTTACCGAACTGAGCTGGAAAAGACTGAACAATATTGGAAAGGCTGGTATGAAGGCCTCTCAGATAAATTTTTGTCATGTCCTGTGCCAAAACTGTTGTTATTAGCCGGAACAGATAGATTGGACAGGTCTCTCACAATTGGTCAAATGCAAGGGAAGTTTCAAATGGTAGTTGTAAGGCATACAGGGCATGCTATTCAGGAAGATGTACCTGATGAATTTGCAACTCTGATTGTTAACTTCATTTCTCGTAACCGAATAGGCCCTCATGGAATTGAGATACCTGGCCTTCGCAAGCCAGCCTTTTCCAAACCTTGA
>Glyma11g01610.2 sequence type=CDS gene model=Glyma11g01610 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGATTCTTCTTCACACATGGCTTCGCTTCCGGAAGATATCATCACCGACGAGCATTTACAACAGCAAACTCAACCCGCCTCAGCCTCTGCTTTCGCTTCCGTTCCTCAGCGCCCGCCAACTAAGAGCTCTTCAGAAAAATATGCACCTTTAGATTGGTCCGTGTATTTTGACAAAGAAGACGATGTTGCAATTCCCGAATCGAACGATGTTTTTCATGTTTACACGGCAGGAACTGAGGGTCCCGTTGTATTCTGTTTACACGGTGGTGGTTATTCTGGGCTTTCTTTTGCTGTCTCAGCAAGTAAAATTAAGGAGAAAGCTAGGGTAGTTGCAATGGACTTGAGAGGTCATGGGAAATCATTGACAGAAGATGATCTTGACTTATCTGTTGAGACTATGTGCAATGATGTATTGGCTGTTATAAAGGAATTATATAGCGACTCTCCTCCAGCCATCATTCTTGTTGGTCACAGCATGGGAGGATCAATTGCTGTGCATGTTGCTGCAAGGAGATCATTGTCTGCCTTGGCGGGGTTGGTTGTTGTGGATGTTGTAGAGGGAACAGCAATGGCTTCACTAATTCATATGCAGAAAATCCTATCAAGCAGGATGCAACATTTTTCAAGCATTGAAAAAGCTATTGAATGGAGTGTCAGGGGTGGCTCTTTAAGAAATATTGATTCTGCTCGTGTATCAATCCCTGCCACATTAAAGTATGACCATTCAAAGAAATGTTATCTTTACCGAACTGAGCTGGAAAAGACTGAACAATATTGGAAAGGCTGGTATGAAGGCCTCTCAGATAAATTTTTGTCATGTCCTGTGCCAAAACTGTTGTTATTAGCCGGAACAGATAGATTGGACAGGTCTCTCACAATTGGTCAAATGCAAGGGAAGTTTCAAATGGTAGTTGTAAGGCATACAGGGCATGCTATTCAGATGTACCTGATGAATTTGCAACTCTGA
>Glyma11g01610.3 sequence type=CDS gene model=Glyma11g01610 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGATTCTTCTTCACACATGGCTTCGCTTCCGGAAGATATCATCACCGACGAGCATTTACAACAGCAAACTCAACCCGCCTCAGCCTCTGCTTTCGCTTCCGTTCCTCAGCGCCCGCCAACTAAGAGCTCTTCAGAAAAATATGCACCTTTAGATTGGTCCGTGTATTTTGACAAAGAAGACGATGTTGCAATTCCCGAATCGAACGATGTTTTTCATGTTTACACGGCAGGAACTGAGGGTCCCGTTGTATTCTGTTTACACGGTGGTGGTTATTCTGGGCTTTCTTTTGCTGTCTCAGCAAGTAAAATTAAGGAGAAAGCTAGGGTAGTTGCAATGGACTTGAGAGGTCATGGGAAATCATTGACAGAAGATGATCTTGACTTATCTGTTGAGACTATGTGCAATGATGTATTGGCTGTTATAAAGGAATTATATAGCGACTCTCCTCCAGCCATCATTCTTGTTGGTCACAGCATGGGAGGATCAATTGCTGTGCATGTTGCTGCAAGGAGATCATTGTCTGCCTTGGCGGGGTTGGTTGTTGTGGATGTTGTAGAGGGAACAGCAATGGCTTCACTAATTCATATGCAGAAAATCCTATCAAGCAGGATGCAACATTTTTCAAGCATTGAAAAAGCTATTGAATGGAGTGTCAGGGGTGGCTCTTTAAGAAATATTGATTCTGCTCGTGTATCAATCCCTGCCACATTAAAGTATGACCATTCAAAGAAATGTTATCTTTACCGAACTGAGCTGGAAAAGACTGAACAATATTGGAAAGGCTGGTATGAAGGCCTCTCAGATAAATTTTTGTCATGTCCTGTGCCAAAACTGTTGTTATTAGCCGGAACAGATAGATTGGACAGGTCTCTCACAATTGGTCAAATGCAAGGGAAGTTTCAAATGGTAGTTGTAAGGCATACAGGGCATGCTATTCAGGAAGATGTACCTGATGAATTTGCAACTCTGATTGTTAACTTCATTTCTCGTAACCGAATAGGCCCTCATGGAATTGAGATACCTGGCCTTCGCAAGCCAGCCTTTTCCAAACCTTGA
Predicted protein sequences of Glyma11g01610
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma11g01610.1 sequence type=predicted peptide gene model=Glyma11g01610 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDSSSHMASLPEDIITDEHLQQQTQPASASAFASVPQRPPTKSSSEKYAPLDWSVYFDKEDDVAIPESNDVFHVYTAGTEGPVVFCLHGGGYSGLSFAVSASKIKEKARVVAMDLRGHGKSLTEDDLDLSVETMCNDVLAVIKELYSDSPPAIILVGHSCIILLTIIGKKLLHHQSMGGSIAVHVAARRSLSALAGLVVVDVVEGTAMASLIHMQKILSSRMQHFSSIEKAIEWSVRGGSLRNIDSARVSIPATLKYDHSKKCYLYRTELEKTEQYWKGWYEGLSDKFLSCPVPKLLLLAGTDRLDRSLTIGQMQGKFQMVVVRHTGHAIQEDVPDEFATLIVNFISRNRIGPHGIEIPGLRKPAFSKP*
>Glyma11g01610.2 sequence type=predicted peptide gene model=Glyma11g01610 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDSSSHMASLPEDIITDEHLQQQTQPASASAFASVPQRPPTKSSSEKYAPLDWSVYFDKEDDVAIPESNDVFHVYTAGTEGPVVFCLHGGGYSGLSFAVSASKIKEKARVVAMDLRGHGKSLTEDDLDLSVETMCNDVLAVIKELYSDSPPAIILVGHSMGGSIAVHVAARRSLSALAGLVVVDVVEGTAMASLIHMQKILSSRMQHFSSIEKAIEWSVRGGSLRNIDSARVSIPATLKYDHSKKCYLYRTELEKTEQYWKGWYEGLSDKFLSCPVPKLLLLAGTDRLDRSLTIGQMQGKFQMVVVRHTGHAIQMYLMNLQL*
>Glyma11g01610.3 sequence type=predicted peptide gene model=Glyma11g01610 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDSSSHMASLPEDIITDEHLQQQTQPASASAFASVPQRPPTKSSSEKYAPLDWSVYFDKEDDVAIPESNDVFHVYTAGTEGPVVFCLHGGGYSGLSFAVSASKIKEKARVVAMDLRGHGKSLTEDDLDLSVETMCNDVLAVIKELYSDSPPAIILVGHSMGGSIAVHVAARRSLSALAGLVVVDVVEGTAMASLIHMQKILSSRMQHFSSIEKAIEWSVRGGSLRNIDSARVSIPATLKYDHSKKCYLYRTELEKTEQYWKGWYEGLSDKFLSCPVPKLLLLAGTDRLDRSLTIGQMQGKFQMVVVRHTGHAIQEDVPDEFATLIVNFISRNRIGPHGIEIPGLRKPAFSKP*