Glyma11g01595 - SoyBase

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Report for Sequence Feature Glyma11g01595

Feature Type:	gene_model
Chromosome:	Gm11
Start:	937341
stop:	945017
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g01595

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G33680	AT	Annotation by Michelle Graham. TAIR10: KH domain-containing protein \| chr1:12204056-12208282 FORWARD LENGTH=763	SoyBase	E_val: 1.00E-147	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
KOG1676	KOG	K-homology type RNA binding proteins	JGI		ISS
PTHR10288	Panther	RNA-BINDING PROTEIN RELATED	JGI		ISS
PTHR10288:SF53	Panther	KH DOMAIN-CONTAINING PROTEIN	JGI		ISS
PF00013	PFAM	KH domain	JGI		ISS
UniRef100_G7K7W5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Far upstream element-binding protein n=1 Tax=Medicago truncatula RepID=G7K7W5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233D12F	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233D12F related cluster n=1 Tax=unknown RepID=UPI000233D12F	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g01595

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g01595 not represented in the dataset	Glyma11g01595 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g01595

Paralog	Evidence	Comments
Glyma01g44095	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g01595 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g013900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g01595

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma11g01595

Limit To All Plant Sequences

>Glyma11g01595.2   sequence type=transcript   gene model=Glyma11g01595   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TACTAAACCCAAGGGTGCGACTGGGGTGCGTAGGTCGTAACCCTAAAATCAGAACCAGTGGCACTGACACGAAAAAATATCTTTTCCTCTCGATCGAATTCACTCACTCATTCTTTCATTTCCCTCTCAGCGCGCTTGCTTCTCTTTCACAGTCACAGCTAATGGCGGAGGAAGAAGTTGCGGCACCCGCTGCCAGCCCCGTTCCCCCTGATAACAAACGCAAGCTCGAAGATCTGCAACCCGAAAACGCCGAATCTAATGCCAACTCCATCTCCGACGCCGTGAACGCCGATGACGCCGCCGTTTCCGCCGAGACCGAGAACAAGCGTCTCCGCCTCGACGACCACCAGGATGGCCTCGCTAATACAAATGGGCATCAAGATGAGCAGGTTGCTGAGCCAGGAAAAGAGACAGAGGAAAGATCCGCTCTGGAGAATGTCACTCCCGAGCATGATCAAACTATATCCGAATATCCTTCTTTGGAGGCAACTGCTAATGAACAAACATCAGCTGAGATTAGCGAGCCAGCTGATTCCAAAGAACCTCCTGTAGAGGACTCTGGACAAGAAAATGCAGAGGAGCCTTCTAAAGAAACTCAACAACAATCTAAGGATTCAACCGAGCAAGATGCTTCTTCTGGCGACAAGCAACCCAATTCAGTTGACACTGCTTTGCACAATGTGGAAGTTCCCTATAATAAGCAAGATACTTCTTCTGGGCAAAAGCAACCAACATCTGGGGATGAAATAACTACACGGAAAATTGAGGTTCCTAACAACAAGGTTGGTGTACTTATTGGCAAGGCTGGAGATACTATACGATACCTGCAGTATAATTCAGGTGCAAAGATTCAGATCACGAGGGATGCTGATGCTGATCCTCTCTGTGCAACAAGGTCTGTGGAATTGATAGGAAGTTTGGAAAGTATTGATAAGGCAGAAAAACTAATGAATGCTGTGATTGCAGAGGCTGATGCTGGGGGTTCTCCTTCACTTGTAGCTCGAGGCCTCTCCCCTGCTCAAGCTACTGTGGGATCTGAACAAATTCAGATACAAGTTCCAAATGAAAAGGTTGGATTAATCATAGGGAGAAGTGGGGAAACAATTAAAAGCCTGCAGACCAAATCCGGGGCGCGCATCCAGTTGATACCTCAACATCTTCCAGAAGGGGATGATTCCAAAGAAAGGACTGTCCAAGTTACTGGTGATAAGAGGCAAATTCAAATTGCACAAGAATTGATAAAGGAAGTTATGAATCAGCCTGTCAGGCCTTCATCTGGTGGCTTTGGTCAGCAGGCCCATCACCCACCCCGTGGTGGATCTGGTGGCCCACCCCAATGGGGTCAGCGGGGCTCTCATTTTGGCCACCCAACAGCATATGATTACCAGCATCGCGGGCCGTTTCCTGCTCACAATCAACCATATGCTCCTGCACCATATGGAAACTATCCTCAACATATGACTCCAAGAAGCAGCTTTGGTTCTGGTTGGGAGCAAAGGCCTCACCACAGCTTTCAAGGGCCACCCCCACACAATGGTGGTTATGAGTATTATGGAGGACATGGGGGTCATTTATCCGATGCTCCACCATCCACACAGCTTCCCAGTTCAGCCCCCCCATATGGTGCTGGTCCTTCCCCTGTACCTTCTATGGGACCAACCCCAGCTCAGGTGAATTACAACTATGGACAGCCACAAGGCCAGGATTATGGTCATCAGACAACTTATTCTCAGGCAGGACTTCCCCAACAAGGTTATGGACAGGGATATGATGAGTCAAAGTATGAAAATCGTGCTCCTACTCAACATTCTTATGGAGGACATGTAAATTCTCAATCGACCTACCCTCAGGCTGGTGCTCAGCCTAATTACCCTGCACCGCAGCAGTTTGGCAAGCCACCATTATATGGCATGCCATCGGGACAGCCTCCACAATCTTATGGTCCCCCTAGAGCTACTCAACCAGGGGATATGCCATATCAAGGTTCCACTCCTGCCCAGTCATATGGCACGAATATGCCAACACAACAACCATACCCATATGCAGTATCTGGGCCATCACAAACAGCATATCCAAGTTATGGGTCTGCACCAGCTACAGATGGCTATAGTCACCCACCACCTGCATCTTTCCCACCTTATACCCAGCCTGCTGCACAACCCACTTATGGTCAGCCAGCTGCCCAGCCTGCAGCCAGTTATACGCAGGTTGGTCCCACTGGTTATGGATCATCATACCCATCTTTACAGCCAAGTTACCCTGAGCAGCCGGCTCCCAACAACGCAGTTTATGGCTACCAAGCACCCCAAGATCCTGGTTATAGCACTGGTGCTGCACCAGCATATAGTACAGCACAACCAAGTGGGCAGCCAGGTTATGTTCAACCCACTCCCACTCAAACTGGTTATGAACAGTCTAACACGCAACCAGCTGGTTATGCAGCTGTCCCGGCAAGTGCTCCGGCTGCGTATGGCAAAACATTGTCGCCCCAGCCTGCTGCTTATCCCCAATACGACTCAACCCAAGTTTATGGTGCTCCTCGATGATATTTTTATGTGTTAACCAAATCTTAGTATTAGCATGCTCTAATTTGATGGCTCCTTTCGGTGTAACCGGTACTGCTTCATCAAAATATAATTTTTCTTAGCACGAGTGCTCTGATGTTACGATTTCTTGAAAATCAAAGTTCACTTGGCCTGTTGTTTCCTCGAAGGATTGTAAAGAAAAATTAATCGATATTATGAAGCCTTATTTTCTCATTTGAGCTTTGCTGGGAGTAACTGGACGTGAGTTGGACTACCATTTGTTTTGAATATAGTGCTTCCAGCCAAATATTCATCAGTTATTTTCAAGACTCTTGTACATATATTAGTGTGCAAAAGTGTTTATTAAAATTAATCATAAATTGCGGTTGAAAGTGGTTGCAGAATTCAATGACTTGCATGGACCGCGTTAAATATCTATGCCTTTTGAAT

Coding sequences of Glyma11g01595

Limit To All Plant Sequences

>Glyma11g01595.1   sequence type=CDS   gene model=Glyma11g01595   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGAGGAAGAAGTTGCGGCACCCGCTGCCAGCCCCGTTCCCCCTGATAACAAACGCAAGCTCGAAGATCTGCAACCCGAAAACGCCGAATCTAATGCCAACTCCATCTCCGACGCCGTGAACGCCGATGACGCCGCCGTTTCCGCCGAGACCGAGAACAAGCGTCTCCGCCTCGACGACCACCAGGATGGCCTCGCTAATACAAATGGGCATCAAGATGAGCAGGTTGCTGAGCCAGGAAAAGAGACAGAGGAAAGATCCGCTCTGGAGAATGTCACTCCCGAGCATGATCAAACTATATCCGAATATCCTTCTTTGGAGGCAACTGCTAATGAACAAACATCAGCTGAGATTAGCGAGCCAGCTGATTCCAAAGAACCTCCTGTAGAGGACTCTGGACAAGAAAATGCAGAGGAGCCTTCTAAAGAAACTCAACAACAATCTAAGGATTCAACCGAGCAAGATGCTTCTTCTGGCGACAAGCAACCCAATTCAGTTGACACTGCTTTGCACAATGTGGAAGTTCCCTATAATAAGCAAGATACTTCTTCTGGGCAAAAGCAACCAACATCTGGGGATGAAATAACTACACGGAAAATTGAGGTTCCTAACAACAAGGTTGGTGTACTTATTGGCAAGGCTGGAGATACTATACGATACCTGCAGTATAATTCAGGTGCAAAGATTCAGATCACGAGGGATGCTGATGCTGATCCTCTCTGTGCAACAAGGTCTGTGGAATTGATAGGAAGTTTGGAAAGTATTGATAAGGCAGAAAAACTAATGAATGCTGTGATTGCAGAGGCTGATGCTGGGGGTTCTCCTTCACTTGTAGCTCGAGGCCTCTCCCCTGCTCAAGCTACTGTGGGATCTGAACAAATTCAGATACAAGTTCCAAATGAAAAGGTTGGATTAATCATAGGGAGAAGTGGGGAAACAATTAAAAGCCTGCAGACCAAATCCGGGGCGCGCATCCAGGTATTGATACCTCAACATCTTCCAGAAGGGGATGATTCCAAAGAAAGGACTGTCCAAGTTACTGGTGATAAGAGGCAAATTCAAATTGCACAAGAATTGATAAAGGAAGTTATGAATCAGCCTGTCAGGCCTTCATCTGGTGGCTTTGGTCAGCAGGCCCATCACCCACCCCGTGGTGGATCTGGTGGCCCACCCCAATGGGGTCAGCGGGGCTCTCATTTTGGCCACCCAACAGCATATGATTACCAGCATCGCGGGCCGTTTCCTGCTCACAATCAACCATATGCTCCTGCACCATATGGAAACTATCCTCAACATATGACTCCAAGAAGCAGCTTTGGTTCTGGTTGGGAGCAAAGGCCTCACCACAGCTTTCAAGGGCCACCCCCACACAATGGTGGTTATGAGTATTATGGAGGACATGGGGGTCATTTATCCGATGCTCCACCATCCACACAGCTTCCCAGTTCAGCCCCCCCATATGGTGCTGGTCCTTCCCCTGTACCTTCTATGGGACCAACCCCAGCTCAGGTGAATTACAACTATGGACAGCCACAAGGCCAGGATTATGGTCATCAGACAACTTATTCTCAGGCAGGACTTCCCCAACAAGGTTATGGACAGGGATATGATGAGTCAAAGTATGAAAATCGTGCTCCTACTCAACATTCTTATGGAGGACATGTAAATTCTCAATCGACCTACCCTCAGGCTGGTGCTCAGCCTAATTACCCTGCACCGCAGCAGTTTGGCAAGCCACCATTATATGGCATGCCATCGGGACAGCCTCCACAATCTTATGGTCCCCCTAGAGCTACTCAACCAGGGGATATGCCATATCAAGGTTCCACTCCTGCCCAGTCATATGGCACGAATATGCCAACACAACAACCATACCCATATGCAGTATCTGGGCCATCACAAACAGCATATCCAAGTTATGGGTCTGCACCAGCTACAGATGGCTATAGTCACCCACCACCTGCATCTTTCCCACCTTATACCCAGCCTGCTGCACAACCCACTTATGGTCAGCCAGCTGCCCAGCCTGCAGCCAGTTATACGCAGGTTGGTCCCACTGGTTATGGATCATCATACCCATCTTTACAGCCAAGTTACCCTGAGCAGCCGGCTCCCAACAACGCAGTTTATGGCTACCAAGCACCCCAAGATCCTGGTTATAGCACTGGTGCTGCACCAGCATATAGTACAGCACAACCAAGTGGGCAGCCAGGTTATGTTCAACCCACTCCCACTCAAACTGGTTATGAACAGTCTAACACGCAACCAGCTGGTTATGCAGCTGTCCCGGCAAGTGCTCCGGCTGCGTATGGCAAAACATTGTCGCCCCAGCCTGCTGCTTATCCCCAATACGACTCAACCCAAGTTTATGGTGCTCCTCGATGA

>Glyma11g01595.2   sequence type=CDS   gene model=Glyma11g01595   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGAGGAAGAAGTTGCGGCACCCGCTGCCAGCCCCGTTCCCCCTGATAACAAACGCAAGCTCGAAGATCTGCAACCCGAAAACGCCGAATCTAATGCCAACTCCATCTCCGACGCCGTGAACGCCGATGACGCCGCCGTTTCCGCCGAGACCGAGAACAAGCGTCTCCGCCTCGACGACCACCAGGATGGCCTCGCTAATACAAATGGGCATCAAGATGAGCAGGTTGCTGAGCCAGGAAAAGAGACAGAGGAAAGATCCGCTCTGGAGAATGTCACTCCCGAGCATGATCAAACTATATCCGAATATCCTTCTTTGGAGGCAACTGCTAATGAACAAACATCAGCTGAGATTAGCGAGCCAGCTGATTCCAAAGAACCTCCTGTAGAGGACTCTGGACAAGAAAATGCAGAGGAGCCTTCTAAAGAAACTCAACAACAATCTAAGGATTCAACCGAGCAAGATGCTTCTTCTGGCGACAAGCAACCCAATTCAGTTGACACTGCTTTGCACAATGTGGAAGTTCCCTATAATAAGCAAGATACTTCTTCTGGGCAAAAGCAACCAACATCTGGGGATGAAATAACTACACGGAAAATTGAGGTTCCTAACAACAAGGTTGGTGTACTTATTGGCAAGGCTGGAGATACTATACGATACCTGCAGTATAATTCAGGTGCAAAGATTCAGATCACGAGGGATGCTGATGCTGATCCTCTCTGTGCAACAAGGTCTGTGGAATTGATAGGAAGTTTGGAAAGTATTGATAAGGCAGAAAAACTAATGAATGCTGTGATTGCAGAGGCTGATGCTGGGGGTTCTCCTTCACTTGTAGCTCGAGGCCTCTCCCCTGCTCAAGCTACTGTGGGATCTGAACAAATTCAGATACAAGTTCCAAATGAAAAGGTTGGATTAATCATAGGGAGAAGTGGGGAAACAATTAAAAGCCTGCAGACCAAATCCGGGGCGCGCATCCAGTTGATACCTCAACATCTTCCAGAAGGGGATGATTCCAAAGAAAGGACTGTCCAAGTTACTGGTGATAAGAGGCAAATTCAAATTGCACAAGAATTGATAAAGGAAGTTATGAATCAGCCTGTCAGGCCTTCATCTGGTGGCTTTGGTCAGCAGGCCCATCACCCACCCCGTGGTGGATCTGGTGGCCCACCCCAATGGGGTCAGCGGGGCTCTCATTTTGGCCACCCAACAGCATATGATTACCAGCATCGCGGGCCGTTTCCTGCTCACAATCAACCATATGCTCCTGCACCATATGGAAACTATCCTCAACATATGACTCCAAGAAGCAGCTTTGGTTCTGGTTGGGAGCAAAGGCCTCACCACAGCTTTCAAGGGCCACCCCCACACAATGGTGGTTATGAGTATTATGGAGGACATGGGGGTCATTTATCCGATGCTCCACCATCCACACAGCTTCCCAGTTCAGCCCCCCCATATGGTGCTGGTCCTTCCCCTGTACCTTCTATGGGACCAACCCCAGCTCAGGTGAATTACAACTATGGACAGCCACAAGGCCAGGATTATGGTCATCAGACAACTTATTCTCAGGCAGGACTTCCCCAACAAGGTTATGGACAGGGATATGATGAGTCAAAGTATGAAAATCGTGCTCCTACTCAACATTCTTATGGAGGACATGTAAATTCTCAATCGACCTACCCTCAGGCTGGTGCTCAGCCTAATTACCCTGCACCGCAGCAGTTTGGCAAGCCACCATTATATGGCATGCCATCGGGACAGCCTCCACAATCTTATGGTCCCCCTAGAGCTACTCAACCAGGGGATATGCCATATCAAGGTTCCACTCCTGCCCAGTCATATGGCACGAATATGCCAACACAACAACCATACCCATATGCAGTATCTGGGCCATCACAAACAGCATATCCAAGTTATGGGTCTGCACCAGCTACAGATGGCTATAGTCACCCACCACCTGCATCTTTCCCACCTTATACCCAGCCTGCTGCACAACCCACTTATGGTCAGCCAGCTGCCCAGCCTGCAGCCAGTTATACGCAGGTTGGTCCCACTGGTTATGGATCATCATACCCATCTTTACAGCCAAGTTACCCTGAGCAGCCGGCTCCCAACAACGCAGTTTATGGCTACCAAGCACCCCAAGATCCTGGTTATAGCACTGGTGCTGCACCAGCATATAGTACAGCACAACCAAGTGGGCAGCCAGGTTATGTTCAACCCACTCCCACTCAAACTGGTTATGAACAGTCTAACACGCAACCAGCTGGTTATGCAGCTGTCCCGGCAAGTGCTCCGGCTGCGTATGGCAAAACATTGTCGCCCCAGCCTGCTGCTTATCCCCAATACGACTCAACCCAAGTTTATGGTGCTCCTCGATGA

Predicted protein sequences of Glyma11g01595

Limit To All Plant Sequences

>Glyma11g01595.1   sequence type=predicted peptide   gene model=Glyma11g01595   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEEEVAAPAASPVPPDNKRKLEDLQPENAESNANSISDAVNADDAAVSAETENKRLRLDDHQDGLANTNGHQDEQVAEPGKETEERSALENVTPEHDQTISEYPSLEATANEQTSAEISEPADSKEPPVEDSGQENAEEPSKETQQQSKDSTEQDASSGDKQPNSVDTALHNVEVPYNKQDTSSGQKQPTSGDEITTRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPLCATRSVELIGSLESIDKAEKLMNAVIAEADAGGSPSLVARGLSPAQATVGSEQIQIQVPNEKVGLIIGRSGETIKSLQTKSGARIQVLIPQHLPEGDDSKERTVQVTGDKRQIQIAQELIKEVMNQPVRPSSGGFGQQAHHPPRGGSGGPPQWGQRGSHFGHPTAYDYQHRGPFPAHNQPYAPAPYGNYPQHMTPRSSFGSGWEQRPHHSFQGPPPHNGGYEYYGGHGGHLSDAPPSTQLPSSAPPYGAGPSPVPSMGPTPAQVNYNYGQPQGQDYGHQTTYSQAGLPQQGYGQGYDESKYENRAPTQHSYGGHVNSQSTYPQAGAQPNYPAPQQFGKPPLYGMPSGQPPQSYGPPRATQPGDMPYQGSTPAQSYGTNMPTQQPYPYAVSGPSQTAYPSYGSAPATDGYSHPPPASFPPYTQPAAQPTYGQPAAQPAASYTQVGPTGYGSSYPSLQPSYPEQPAPNNAVYGYQAPQDPGYSTGAAPAYSTAQPSGQPGYVQPTPTQTGYEQSNTQPAGYAAVPASAPAAYGKTLSPQPAAYPQYDSTQVYGAPR*

>Glyma11g01595.2   sequence type=predicted peptide   gene model=Glyma11g01595   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEEEVAAPAASPVPPDNKRKLEDLQPENAESNANSISDAVNADDAAVSAETENKRLRLDDHQDGLANTNGHQDEQVAEPGKETEERSALENVTPEHDQTISEYPSLEATANEQTSAEISEPADSKEPPVEDSGQENAEEPSKETQQQSKDSTEQDASSGDKQPNSVDTALHNVEVPYNKQDTSSGQKQPTSGDEITTRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPLCATRSVELIGSLESIDKAEKLMNAVIAEADAGGSPSLVARGLSPAQATVGSEQIQIQVPNEKVGLIIGRSGETIKSLQTKSGARIQLIPQHLPEGDDSKERTVQVTGDKRQIQIAQELIKEVMNQPVRPSSGGFGQQAHHPPRGGSGGPPQWGQRGSHFGHPTAYDYQHRGPFPAHNQPYAPAPYGNYPQHMTPRSSFGSGWEQRPHHSFQGPPPHNGGYEYYGGHGGHLSDAPPSTQLPSSAPPYGAGPSPVPSMGPTPAQVNYNYGQPQGQDYGHQTTYSQAGLPQQGYGQGYDESKYENRAPTQHSYGGHVNSQSTYPQAGAQPNYPAPQQFGKPPLYGMPSGQPPQSYGPPRATQPGDMPYQGSTPAQSYGTNMPTQQPYPYAVSGPSQTAYPSYGSAPATDGYSHPPPASFPPYTQPAAQPTYGQPAAQPAASYTQVGPTGYGSSYPSLQPSYPEQPAPNNAVYGYQAPQDPGYSTGAAPAYSTAQPSGQPGYVQPTPTQTGYEQSNTQPAGYAAVPASAPAAYGKTLSPQPAAYPQYDSTQVYGAPR*

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