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Report for Sequence Feature Glyma11g01520

Feature Type:gene_model
Chromosome:Gm11
Start:907744
stop:913069
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G03150AT Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G17165.1); Has 39 Blast hits to 39 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:727733-729357 REVERSE LENGTH=121 SoyBaseE_val: 1.00E-23ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_B8Y3H9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Hydrogen peroxide-induced 1 n=1 Tax=Nicotiana tabacum RepID=B8Y3H9_TOBAC SoyBaseE_val: 9.00E-28ISS
UniRef100_I1LG31UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LG31_SOYBN SoyBaseE_val: 1.00E-80ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma01g44040 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g013200 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma11g01520.3   sequence type=transcript   gene model=Glyma11g01520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GACAAGGGAAAATATCGAGTCCGTGGTTGGAGGTGAAAGACAAACTAAAAAGAAAAACAAATGAGGATAATTGTTTTCCAACTCATCATCCTCATCCCACCCACCCCATCCTTTCCTTTTCCGAGGGGAGCATACAGTAGCGGCTCAGTGTACGACAAGAACCCTGATGATGAGATCCAGTCTGGGCAGGTCCCAGACGATGTGATCCAGGCGGCAACACAATCCGGCAAATACTGGGCCCCACATCCACAGACTGGGGTATTTGGGCCCCCCGGAGGAGGTGACCAAACTGCTTCTGCCATTCACTCTGATGCGCTGGAGGAGAAGGCCTGGTTTCGCCCCACCAGTCTCGAGGATTTCGAGAAGCCTCACACCCTTCCTTAACAACCATTGGAGGACATCATATTATAATACTAAATTAAATAAACACTGTGTCAGCCTCTCAGGTGTGTCCTTGGTTTCCTTCCTCCAACTAGCTGTTTAATTACTCCTCAGCTTCAAACTGCACTGCATGCTCCGCTGTACCGGAGCATACCAGTAACATGAACTACCTTATGCATCATGTATTTCTCTTTTCATGCAACTTTAATGTTAGACTTATTATTATTATCATGCTTATTGCTACTATATGCATGCTCATCTTCTGCCCCGCTCCCTAGCTAGCACAAAGTGATATCGACCATTAAACTCTGTTTTAAGCTGATACTTTCTTGAGAAGGAAACGGGATTACATGG

>Glyma11g01520.1   sequence type=CDS   gene model=Glyma11g01520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGCCAATTCCAGTAGCCGAGGGATCACCGCCTTAGGGAAGCGAGTCGCCAACCGGATCTGGACTTCCAACGCACCTCCTCTCACTTCAAGGAGGGGAGCATACAGTAGCGGCTCAGTGTACGACAAGAACCCTGATGATGAGATCCAGTCTGGGCAGGTCCCAGACGATGTGATCCAGGCGGCAACACAATCCGGCAAATACTGGGCCCCACATCCACAGACTGGGGTATTTGGGCCCCCCGGAGGAGGTGACCAAACTGCTTCTGCCATTCACTCTGATGCGCTGGAGGAGAAGGCCTGGTTTCGCCCCACCAGTCTCGAGGATTTCGAGAAGCCTCACACCCTTCCTTAA

>Glyma11g01520.3   sequence type=CDS   gene model=Glyma11g01520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGATAATTGTTTTCCAACTCATCATCCTCATCCCACCCACCCCATCCTTTCCTTTTCCGAGGGGAGCATACAGTAGCGGCTCAGTGTACGACAAGAACCCTGATGATGAGATCCAGTCTGGGCAGGTCCCAGACGATGTGATCCAGGCGGCAACACAATCCGGCAAATACTGGGCCCCACATCCACAGACTGGGGTATTTGGGCCCCCCGGAGGAGGTGACCAAACTGCTTCTGCCATTCACTCTGATGCGCTGGAGGAGAAGGCCTGGTTTCGCCCCACCAGTCTCGAGGATTTCGAGAAGCCTCACACCCTTCCTTAA

>Glyma11g01520.1   sequence type=predicted peptide   gene model=Glyma11g01520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAANSSSRGITALGKRVANRIWTSNAPPLTSRRGAYSSGSVYDKNPDDEIQSGQVPDDVIQAATQSGKYWAPHPQTGVFGPPGGGDQTASAIHSDALEEKAWFRPTSLEDFEKPHTLP*

>Glyma11g01520.3   sequence type=predicted peptide   gene model=Glyma11g01520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRIIVFQLIILIPPTPSFPFPRGAYSSGSVYDKNPDDEIQSGQVPDDVIQAATQSGKYWAPHPQTGVFGPPGGGDQTASAIHSDALEEKAWFRPTSLEDFEKPHTLP*







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