Report for Sequence Feature Glyma11g01520
Feature Type: gene_model
Chromosome: Gm11
Start: 907744
stop: 913069
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma11g01520
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G03150 AT
Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G17165.1); Has 39 Blast hits to 39 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:727733-729357 REVERSE LENGTH=121
SoyBase E_val: 1.00E-23 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_B8Y3H9 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Hydrogen peroxide-induced 1 n=1 Tax=Nicotiana tabacum RepID=B8Y3H9_TOBAC
SoyBase E_val: 9.00E-28 ISS
UniRef100_I1LG31 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LG31_SOYBN
SoyBase E_val: 1.00E-80 ISS
Expression Patterns of Glyma11g01520
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma11g01520
Paralog Evidence Comments
Glyma01g44040 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma11g01520 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.11g013200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma11g01520
Transcripts of Glyma11g01520
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma11g01520.3 sequence type=transcript gene model=Glyma11g01520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
GACAAGGGAAAATATCGAGTCCGTGGTTGGAGGTGAAAGACAAACTAAAAAGAAAAACAAATGAGGATAATTGTTTTCCAACTCATCATCCTCATCCCACCCACCCCATCCTTTCCTTTTCCGAGGGGAGCATACAGTAGCGGCTCAGTGTACGACAAGAACCCTGATGATGAGATCCAGTCTGGGCAGGTCCCAGACGATGTGATCCAGGCGGCAACACAATCCGGCAAATACTGGGCCCCACATCCACAGACTGGGGTATTTGGGCCCCCCGGAGGAGGTGACCAAACTGCTTCTGCCATTCACTCTGATGCGCTGGAGGAGAAGGCCTGGTTTCGCCCCACCAGTCTCGAGGATTTCGAGAAGCCTCACACCCTTCCTTAACAACCATTGGAGGACATCATATTATAATACTAAATTAAATAAACACTGTGTCAGCCTCTCAGGTGTGTCCTTGGTTTCCTTCCTCCAACTAGCTGTTTAATTACTCCTCAGCTTCAAACTGCACTGCATGCTCCGCTGTACCGGAGCATACCAGTAACATGAACTACCTTATGCATCATGTATTTCTCTTTTCATGCAACTTTAATGTTAGACTTATTATTATTATCATGCTTATTGCTACTATATGCATGCTCATCTTCTGCCCCGCTCCCTAGCTAGCACAAAGTGATATCGACCATTAAACTCTGTTTTAAGCTGATACTTTCTTGAGAAGGAAACGGGATTACATGG
Coding sequences of Glyma11g01520
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma11g01520.1 sequence type=CDS gene model=Glyma11g01520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCCGCCAATTCCAGTAGCCGAGGGATCACCGCCTTAGGGAAGCGAGTCGCCAACCGGATCTGGACTTCCAACGCACCTCCTCTCACTTCAAGGAGGGGAGCATACAGTAGCGGCTCAGTGTACGACAAGAACCCTGATGATGAGATCCAGTCTGGGCAGGTCCCAGACGATGTGATCCAGGCGGCAACACAATCCGGCAAATACTGGGCCCCACATCCACAGACTGGGGTATTTGGGCCCCCCGGAGGAGGTGACCAAACTGCTTCTGCCATTCACTCTGATGCGCTGGAGGAGAAGGCCTGGTTTCGCCCCACCAGTCTCGAGGATTTCGAGAAGCCTCACACCCTTCCTTAA
>Glyma11g01520.3 sequence type=CDS gene model=Glyma11g01520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAGGATAATTGTTTTCCAACTCATCATCCTCATCCCACCCACCCCATCCTTTCCTTTTCCGAGGGGAGCATACAGTAGCGGCTCAGTGTACGACAAGAACCCTGATGATGAGATCCAGTCTGGGCAGGTCCCAGACGATGTGATCCAGGCGGCAACACAATCCGGCAAATACTGGGCCCCACATCCACAGACTGGGGTATTTGGGCCCCCCGGAGGAGGTGACCAAACTGCTTCTGCCATTCACTCTGATGCGCTGGAGGAGAAGGCCTGGTTTCGCCCCACCAGTCTCGAGGATTTCGAGAAGCCTCACACCCTTCCTTAA
Predicted protein sequences of Glyma11g01520
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma11g01520.1 sequence type=predicted peptide gene model=Glyma11g01520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAANSSSRGITALGKRVANRIWTSNAPPLTSRRGAYSSGSVYDKNPDDEIQSGQVPDDVIQAATQSGKYWAPHPQTGVFGPPGGGDQTASAIHSDALEEKAWFRPTSLEDFEKPHTLP*
>Glyma11g01520.3 sequence type=predicted peptide gene model=Glyma11g01520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MRIIVFQLIILIPPTPSFPFPRGAYSSGSVYDKNPDDEIQSGQVPDDVIQAATQSGKYWAPHPQTGVFGPPGGGDQTASAIHSDALEEKAWFRPTSLEDFEKPHTLP*