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Report for Sequence Feature Glyma11g01501

Feature Type:gene_model
Chromosome:Gm11
Start:894226
stop:895445
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma11g01501
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G33340AT Annotation by Michelle Graham. TAIR10: Eukaryotic aspartyl protease family protein | chr5:12594474-12595787 FORWARD LENGTH=437 SoyBaseE_val: 6.00E-71ISS
GO:0006508GO-bp Annotation by Michelle Graham. GO Biological Process: proteolysis SoyBaseN/AISS
GO:0010310GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process SoyBaseN/AISS
GO:0010337GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of salicylic acid metabolic process SoyBaseN/AISS
GO:0042742GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to bacterium SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0048046GO-cc Annotation by Michelle Graham. GO Cellular Compartment: apoplast SoyBaseN/AISS
GO:0004190GO-mf Annotation by Michelle Graham. GO Molecular Function: aspartic-type endopeptidase activity SoyBaseN/AISS
KOG1339 KOG Aspartyl protease JGI ISS
PTHR13683Panther ASPARTYL PROTEASES JGI ISS
PTHR13683:SF98Panther CHLOROPLAST NUCLEIOD DNA-BINDING-RELATED JGI ISS
UniRef100_G7K6K1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Aspartic proteinase nepenthesin-1 n=1 Tax=Medicago truncatula RepID=G7K6K1_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233C6D9UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233C6D9 related cluster n=1 Tax=unknown RepID=UPI000233C6D9 SoyBaseE_val: 0ISS

Expression Patterns of Glyma11g01501
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g01501 not represented in the dataset
Glyma11g01501 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g01501
ParalogEvidenceComments
Glyma01g44020 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g01501 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g013000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma11g01501
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma11g01501
>Glyma11g01501.1   sequence type=CDS   gene model=Glyma11g01501   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTTATCCAGGATTATCTCGATTTTTAAAATTAACCAACATTAAACACTCACTTAATTCTCCCTTCTACAAATCAAATAAACTTCATATGCATAGACCTGGCTCATTTTACCAAGTTCCCAAGAAATCATATGCCTCAAATGGTCCCTTCACGAGAGTGACATCCAACAATGGTGACTATCTCATGAAGCTCACATTGGGAACACCACCAGTGGACGTGTATGGTTTGGTTGATACAGACAGTGATCTTGTGTGGGCACAATGTACACCTTGTCAGGGTTGTTATAAGCAGAAAAATCCAATGTTTGACCCTCTAAAGGAGTGTAATTCATTCTTTGATCATTCTTGTTCTCCTGAAAAAGCGTGCGATTATGTTTATGCTTATGCTGATGATTCAGCAACAAAAGGGATGCTTGCAAAGGAAATTGCCACATTTAGTTCCACCGATGGAAAACCTATTGTTGAAAGCATTATATTTGGGTGTGGACACAACAACACAGGGGTTTTTAATGAAAATGATATGGGACTAATTGGGCTAGGTGGGGGGCCTCTTTCACTTGTTTCACAAATGGGTAACCTTTATGGGAGCAAAAGGTTCTCTCAGTGCCTGGTTCCTTTTCATGCAGACCCTCACACTTCAGGTACCATTAGTCTTGGTGAAGCCAGTGATGTTTCAGGTGAAGGAGTAGTCACAACTCCTTTGGTCTCTGAAGAAGGTCAGACTCCTTATTTAGTCACATTGGAAGGCATAAGTACACCAGAAACATATTTACCACAAGAATTTTATGACCGACTAGTGGAGGAATTGAAGGTGCAGATTAACCTACCACCCATTCATGTTGACCCTGACTTGGGCACACAACTTTGTTACAAAAGTGAGACAAATTTGGAAGGGCCAATCTTGACTGCTCATTTTGAGGGGGCAGATGTGAAATTGCTGCCATTACAAACCTTCATCCCACCAAAAGATGGTGTATTTTGCTTTGCAATGACTGGCACTACTGATGGCTTATATATATTTGGTAATTTTGCTCAATCAAATGTTTTGATTGGGTTTGATTTAGATAAAAGGATTGTTTTTTTTAAGCCAACTGATTTCACCAAACCGTAG
Predicted protein sequences of Glyma11g01501
>Glyma11g01501.1   sequence type=predicted peptide   gene model=Glyma11g01501   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
IYPGLSRFLKLTNIKHSLNSPFYKSNKLHMHRPGSFYQVPKKSYASNGPFTRVTSNNGDYLMKLTLGTPPVDVYGLVDTDSDLVWAQCTPCQGCYKQKNPMFDPLKECNSFFDHSCSPEKACDYVYAYADDSATKGMLAKEIATFSSTDGKPIVESIIFGCGHNNTGVFNENDMGLIGLGGGPLSLVSQMGNLYGSKRFSQCLVPFHADPHTSGTISLGEASDVSGEGVVTTPLVSEEGQTPYLVTLEGISTPETYLPQEFYDRLVEELKVQINLPPIHVDPDLGTQLCYKSETNLEGPILTAHFEGADVKLLPLQTFIPPKDGVFCFAMTGTTDGLYIFGNFAQSNVLIGFDLDKRIVFFKPTDFTKP*






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