Glyma11g01470 - SoyBase

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Report for Sequence Feature Glyma11g01470

Feature Type:	gene_model
Chromosome:	Gm11
Start:	877893
stop:	880718
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g01470

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G17170	AT	Annotation by Michelle Graham. TAIR10: rubredoxin family protein \| chr5:5649335-5650975 FORWARD LENGTH=271	SoyBase	E_val: 2.00E-140	ISS
GO:0006098	GO-bp	Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt	SoyBase	N/A	ISS
GO:0006364	GO-bp	Annotation by Michelle Graham. GO Biological Process: rRNA processing	SoyBase	N/A	ISS
GO:0009637	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to blue light	SoyBase	N/A	ISS
GO:0009657	GO-bp	Annotation by Michelle Graham. GO Biological Process: plastid organization	SoyBase	N/A	ISS
GO:0010114	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to red light	SoyBase	N/A	ISS
GO:0010207	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosystem II assembly	SoyBase	N/A	ISS
GO:0010218	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to far red light	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009534	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0046872	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metal ion binding	SoyBase	N/A	ISS
PTHR14769	Panther	FAMILY NOT NAMED	JGI		ISS
UniRef100_B9S1Y2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Electron transporter, putative n=1 Tax=Ricinus communis RepID=B9S1Y2_RICCO	SoyBase	E_val: 2.00E-156	ISS
UniRef100_I1LG26	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LG26_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g01470

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g01470 not represented in the dataset	Glyma11g01470 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g01470

Paralog	Evidence	Comments
Glyma01g44000	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g01470 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g012700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g01470

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma11g01470

Limit To All Plant Sequences

>Glyma11g01470.2   sequence type=CDS   gene model=Glyma11g01470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCACAGTCACAGGGTGTTAAATGGGGAGTTGCATCAGCAGTTTACCGTCCTTGAAAGCCATACAGTGAGGGTTGTTTGGTGTCTTCACCTCCACCACCAGTCAAATATTATCTATATTTTCAAACTAAAAGAATTTTCTCTAAACACCATAAAAAAAATACTAAAAAGAAAAGGAGAAACTCTTTCCTCTTATTATTCAGAAGGAAAGTGTGTTTTGTTCGGTGGTCAATTCCCATCCACACGCCTCACCGGAAACATGTCAGCGGTGGTTGCTGGTTCCTCCTCTTCATTCTCTGCCACCTTCACTACCAGAAGGAGCCCCTCCTTAAAAAACTCTCAACTCTCTCATTCCAAGACACTAACTTCTCCTCAATGCCAGAAGACATCTTTACAAGGCCTCTCACTTCATGAAGCCAAAAGGGGTGTTTCAGAATCCTTCCTAGTTGAGAACAAGAATGGTTCCTCCATTGCTGGAAGGAGACTTGAGATCAAAGCAAGAACTGCTGGGGCCTCAAAGACAATTGAGGTGGAGGTTGACAAGCCACTTGGCCTCACCTTAGGCCAAAAGTCTGGTGGTGGTGTTGTCATCACTGCTGTTGATGGTGGTGGGAATGCAGCAAGAGCAGGGTTAAAGGCAGGGGACCAAGTCCTTTACACTAGCAGTTTCTTTGGGGATGAATTGTGGCCTGCGGATAAGCTTGGATTTACTAAAACCGCCATCCAAGCAAAGCCAGACTCTGTCTACTTTGTCGTCAGCAGAGGTGCTGAAGTAGACGTTAAAAAGCTCACAAAACGGCCTGCTCCTCCTCGATTTGGAAGAAAACTGACTGAGACTCAAAAGGCGAGAGCTACTCACATTTGCCTTGATTGTGGATACATATACACCTTACAGAAATCTTTTGATGAGCAGCCGGACACATACGGGTGTCCTCAATGTCAAGCACCAAAGAAGAGGTTTGCTCGGTATGATGTTAACACTGGAAAAGCTATTGGTGGGGGCTTGCCTCCAATTGGAGTTATTATTGGACTCCTGGCTGGAGTAGGGGCAGTTGGGGCTTTGCTTGTTTATGGTCTTCAGTAA

Predicted protein sequences of Glyma11g01470

Limit To All Plant Sequences

>Glyma11g01470.2   sequence type=predicted peptide   gene model=Glyma11g01470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHSHRVLNGELHQQFTVLESHTVRVVWCLHLHHQSNIIYIFKLKEFSLNTIKKILKRKGETLSSYYSEGKCVLFGGQFPSTRLTGNMSAVVAGSSSSFSATFTTRRSPSLKNSQLSHSKTLTSPQCQKTSLQGLSLHEAKRGVSESFLVENKNGSSIAGRRLEIKARTAGASKTIEVEVDKPLGLTLGQKSGGGVVITAVDGGGNAARAGLKAGDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVYFVVSRGAEVDVKKLTKRPAPPRFGRKLTETQKARATHICLDCGYIYTLQKSFDEQPDTYGCPQCQAPKKRFARYDVNTGKAIGGGLPPIGVIIGLLAGVGAVGALLVYGLQ*

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