Glyma11g01460 - SoyBase

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Report for Sequence Feature Glyma11g01460

Feature Type:	gene_model
Chromosome:	Gm11
Start:	872345
stop:	876559
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g01460

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G28060	AT	Annotation by Michelle Graham. TAIR10: Pre-mRNA-splicing factor 3 \| chr1:9779167-9782486 FORWARD LENGTH=786	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2769	KOG	Putative u4/u6 small nuclear ribonucleoprotein	JGI		ISS
PTHR14212	Panther	U4/U6-ASSOCIATED RNA SPLICING FACTOR-RELATED	JGI		ISS
PF06544	PFAM	Protein of unknown function (DUF1115)	JGI		ISS
PF08572	PFAM	pre-mRNA processing factor 3 (PRP3)	JGI		ISS
UniRef100_G7IF06	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: U4/U6 small nuclear ribonucleoprotein Prp3 n=1 Tax=Medicago truncatula RepID=G7IF06_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233C6D8	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233C6D8 related cluster n=1 Tax=unknown RepID=UPI000233C6D8	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g01460

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g01460

Paralog	Evidence	Comments
Glyma01g43990	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g01460 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g012500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g01460

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma11g01460

Limit To All Plant Sequences

>Glyma11g01460.2   sequence type=CDS   gene model=Glyma11g01460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGACAGAGTCAAATCTGAAAAGAGAAGCAGAGATCGACACTTGGAACGTGATGACAAATACCATCAAGATTCTGATGATATCCGCCATCATCGATCAGACAGGAATCACAAGTGTGACCACAAATCAAGGGACAGGGATAGGGATAGGGCTTATGACAGAGAAGGAATCAAGGATAGGAATAGGGCTTATGACAGAGAAGGAAGCAGGGATAGGGATAGGGCTTATGACAGAGAAGGAAGCAAGGATAGGGAAAGGGCTTATGACAGAGAAGGAAGCAAGGATAGGGATAGGGAATACGAAAGAGAGGGTAGCAAAGTTAGGTTGAAGGGGAAGCATGATGAGGGGAGGGAAGATTTGGTGGAGCCACGACTCTCGTCACATTCTCATAAGCGGAAAGAGAGGGAGCACAGTGAGGACAGGGACTACGAGGATAAGAAAATTAGGATTTCCGAGGAGAGGAAGGAAGGGAGAAGGGAACGGAGGAAATTTGGGGATAAAGTCAAGAAGGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGGTAATGATAATATTAGAGGCATTCATGAGGCCAAGGTCAAGGAGGAAGTCACTGATGGTGCCCATGGCTCAGCTTCTTCCAATGGCACTGTGTTTATCCAAAACGGTGCCCTGGGATCACCTGCTGTGGCCCCCATGAGTGTGCCTGAAACATCTTTGGCTCCTCCTCCTTCTGTTCCTATCAAGGTATCTTCGAATTCTACCACAAATGAAAATAAGGGCATTAGTATTACCAGGTCTCATGAGGTTACTGGAAAATCTAGTACAGATGGGTCATCTTCAACTGCTAGAAAAACTGGGAGCCTCTCTATTGATGCCCTAGCTAAGGCTAAGAAAGCTTTACAAATGCAGAAAGAGTTGTCAGAAAAGCTAAAGAAAATTCCTCAGTTGAATAAGAGTTCTACCCAAAATTCACAAGGAAGCTCTAACTTGGGCTCAATGAATGAATCTGCAGTACCCTCTTCTGCTGCTGGAGTGGCATCAAAAAGTTCCACGTCAGCTTCTTTGGTCCATGCTGCAAATATGTCAATTTTCCCCTCAACTGCTTTTGCTGCTTCTGCTAATACTCCAGTAATTGGCACTAGTGCTGCTGGTATTCCAAATGCAACTCTGCCCAACTGGGAAGCTGTCAGGCGTGCTCAAGAGCTTGCTGCCAGGATGGGATTTCGTCAAGATCCACAATTTGCTCCTCTGATAAACATGTTTCCTGGTCAGATGGTAACAGATGTTACTCTCCTGCAGAAACCCATGAAGGCCCCTGTTCTTCGTCTTGATGCTCAGGGACGGGAAATAGATGAGCATGGAAATGTTATTAATGTGACTAAGCCCATCAACCTTAGCACATTAAAGGTCAACATTAACAAACAAAAGAAAGAAGCATTTGAAATACTACAACCTGTATTAGATGTCGATCCTGAATCTAATCCTCATTTTGATGCAAGCATGGGTATCAACAAAACAAAGCTCCTGCGGCCCAAGAGGATGAATTTCCAATTTGTTGAGGAAGGAAAATGGTCAAAAGATGCTGAAACAATAAAATTGAAGAGTAAATTTGGAGAAGCTCAAGCAAAAGAGCACAAGGCCAAACTGGCACAGTTGGCAAAGGCAAAGGCTGCTCCTGATATAAATCCTAACTTAATAGAAATAACAGAGAGAGTTGTAATTAAAGAAAAGCCCAAGGACCAAATTCCAGACATTGAGTGGTGGGATGTGCCACTTCTGCATTGTCGAAATTATGGTGACATTGATAATGGAACCATTGGCGAAGATAAACTGAAAATAGAAAAAATCACTTTTTATGTGGAGCATCCTCGTCCAGTTGAGCCACCTGCTGAGCCTGCTCCCCCACCACCTCAACCACTCAAGCTAACTAAGCAAGAGCAGAAGAAACTCCGGACACAAAGACGTATAGCTAAGGAGAAAGAGCGACAGGAGATGATAAGACAGGGTGTCATAGAACCACCAAAACCAAAGGTCAAGATTAGCAATTTAATGAAAGTACTTGGCTCTGAAGCAACTCAAGATCCTACTCGGCTCGAAAAGGAAATACGTACTGCAGCTGCGGAGCGTGAGCAGGCTCACATAGATAGGAACATTGCACGCAAGCTTACTCCTGCTGAGCTGCGGGAGAAGAAGGAGAAGAAGTTGTTCGATGACCCAAATACACTGGAGACACTTGTCTCTCTTTACAGGATAAATGACCTCTCACATCCAAAGGCCAGATTCAGAGTTGACGTTAATGCTCAAGAGAACCGTTTGACTGGATGTGCTGTGATTTGTGATGGTATTAGTGTTGTTGTTGTTGAAGGTGGAAGCAAGTCCATTAAGAGGTATGGGAAACTTATGCTTAGACGTATTAATTGGAGTGAAGTTTCAAAAGATAAAGAAGAAAATGAAGATTCAGATGATGACAAGCCTGCCAATAAGTGTGTTCTGGTGTGGCAAGGAAGTGTTGCCAAACCCAGCTTCAATAGGTTCAGTGTCCATGATTGCATCACCGAAGCTGCTGCCCGAAAAGTTTTTGCGGATGCTGGCGTTCCTCATTATTGGGACCAAGCCGTGAACTACAAAGAAGATGAAGCTATTTAA

Predicted protein sequences of Glyma11g01460

Limit To All Plant Sequences

>Glyma11g01460.2   sequence type=predicted peptide   gene model=Glyma11g01460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDDRVKSEKRSRDRHLERDDKYHQDSDDIRHHRSDRNHKCDHKSRDRDRDRAYDREGIKDRNRAYDREGSRDRDRAYDREGSKDRERAYDREGSKDRDREYEREGSKVRLKGKHDEGREDLVEPRLSSHSHKRKEREHSEDRDYEDKKIRISEERKEGRRERRKFGDKVKKEEEEEEEEEEEEEEDGNDNIRGIHEAKVKEEVTDGAHGSASSNGTVFIQNGALGSPAVAPMSVPETSLAPPPSVPIKVSSNSTTNENKGISITRSHEVTGKSSTDGSSSTARKTGSLSIDALAKAKKALQMQKELSEKLKKIPQLNKSSTQNSQGSSNLGSMNESAVPSSAAGVASKSSTSASLVHAANMSIFPSTAFAASANTPVIGTSAAGIPNATLPNWEAVRRAQELAARMGFRQDPQFAPLINMFPGQMVTDVTLLQKPMKAPVLRLDAQGREIDEHGNVINVTKPINLSTLKVNINKQKKEAFEILQPVLDVDPESNPHFDASMGINKTKLLRPKRMNFQFVEEGKWSKDAETIKLKSKFGEAQAKEHKAKLAQLAKAKAAPDINPNLIEITERVVIKEKPKDQIPDIEWWDVPLLHCRNYGDIDNGTIGEDKLKIEKITFYVEHPRPVEPPAEPAPPPPQPLKLTKQEQKKLRTQRRIAKEKERQEMIRQGVIEPPKPKVKISNLMKVLGSEATQDPTRLEKEIRTAAAEREQAHIDRNIARKLTPAELREKKEKKLFDDPNTLETLVSLYRINDLSHPKARFRVDVNAQENRLTGCAVICDGISVVVVEGGSKSIKRYGKLMLRRINWSEVSKDKEENEDSDDDKPANKCVLVWQGSVAKPSFNRFSVHDCITEAAARKVFADAGVPHYWDQAVNYKEDEAI*

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