SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G43190 | AT | Annotation by Michelle Graham. TAIR10: ribonuclease P family protein | chr2:17956220-17957833 FORWARD LENGTH=296 | SoyBase | E_val: 1.00E-91 | ISS |
| GO:0006364 | GO-bp | Annotation by Michelle Graham. GO Biological Process: rRNA processing | SoyBase | N/A | ISS |
| GO:0006396 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA processing | SoyBase | N/A | ISS |
| GO:0009410 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to xenobiotic stimulus | SoyBase | N/A | ISS |
| GO:0022402 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell cycle process | SoyBase | N/A | ISS |
| GO:0048522 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of cellular process | SoyBase | N/A | ISS |
| GO:0000172 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: ribonuclease MRP complex | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005655 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleolar ribonuclease P complex | SoyBase | N/A | ISS |
| GO:0030677 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: ribonuclease P complex | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| GO:0004526 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ribonuclease P activity | SoyBase | N/A | ISS |
| GO:0004540 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ribonuclease activity | SoyBase | N/A | ISS |
| PTHR13348 | Panther | RIBONUCLEASE P | JGI | ISS | |
| PF01868 | PFAM | Domain of unknown function UPF0086 | JGI | ISS | |
| UniRef100_G7K6I6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ribonuclease P protein subunit p29 n=1 Tax=Medicago truncatula RepID=G7K6I6_MEDTR | SoyBase | E_val: 8.00E-147 | ISS |
| UniRef100_I1LG21 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LG21_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma11g01420 not represented in the dataset |
Glyma11g01420 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g43946 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g012100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g01420.4 sequence type=transcript gene model=Glyma11g01420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AATTAAAATAAAAAATATATAGTAATTGAAGAAGCCCAAATCACCAACCCTATCTATCTATCTCTCTTCGAATCCCCTCCCCCTTAACAAGTTAGCACTCATGATTCCCTCTTCACTCCGATCCACTCGCATATAACAACCCTTATTTCTCCATTGCAAGGTTCATAAAAGCACAGGAATGGAATTAAGCGCGGAGTATTTTAAAATTCATAACGATGTAGACTTATTTTTTTAAGAAAATCTAAATGTATACCGTATTATTTTTACAAAAAGAACGAACTTGGATGAGCCCGTTTTTTCTAACCCTTATAAGAAAGTATGAGTGGTTGAATTAGAAAAAATTAATAGCGGCATCACATCGAAGCTCAATAGTTAATAGCGGCCTCTCGCCGGCAAGAGGTGGTCGCAGCGGTGGTTCTGAGCATTGGGAGCTGACAGTGGCAGCACCGTTGCTTTCTGTTTCAGTTTATTTTAATTGATTTGTGCCTTCTTGCTTCTCCGTCCTCGTCAAGGTGTCCATGGCTGAAGATTCAAGGAAACGCACATTGGAGGCTTTGGAGAGAAGAATAGCTTTTGCTAAAGTTGAAGTTCTCCAAAAAGAAAAGAAAAACAAAAAGACTATAAATGAAGATGGGAAACTACCTATTCCTGCAGATTCTACTTCTAATGATCCTTCCCCACATTTGTTGCATTCATCATCAGTCTCATCCAAGAAAGGGAATTTCAGTTTCTCTGGTCATACCACTTTGCAAGACATTGAAGATGGTCCAGCATATGCCCAACTTTCTGTGCCTGTAAATGGAAATCTGCTCACAACTAATGAGGAGTTTTCTGCTGAAAGAGGAGGTTCAATTGATGGCATATTGCATGAGCTTCTTCAGAAGGGAGATGCAGCACATAAGTACATGCAAGGATCTAGAAACATGAAAATTGACAACTGGATCCTTCTTGATAATTATGTACAAGGACGGGTGCTTTCCTCTGGTTCTCAAGCTAGGGCTTTGCAACTTCATTCAAAACGCTCTAAGAAACACATGTCTATGAAACGGCATAAGAAGGATGGATCATTAGATCTTCCTCAAGAGTTCCAGAAATTTGATATTTTCAAGCCAATGCACGAAATGTGGAAAGATTACATAATGTTGCTTCTTAAATCCACTGGGAAAAATCAATTGGCTCAATGTCTCCTTGGTGCAGATCTACATGGTGCTTTTATTTTAGTTGTGGAGTGTAAAATAACCCATTTTACTGGAATTTGTGGCATCATGATTCGTGAAACTGCAGAAGCATTTGGGATAATTACTGAAGATAATAAATTCCGAGTTGTTCCCAAAAAGGTTTCTGTGTTTGTATTCCAAGTTGATTGCTGGAAAGTCACTCTGCATGGAGATAAACTTGGTTCAAGAAAGGTTGGATTATGATATTGGTGATAATCCTTCAACTGTAGAATATCCACGTGACACCTGTGCAATTTGAAAGTCCCAAGCAGTCTATGGGAGAAAGGGAAAAGTTTGATTGCTGATTTGTATCAGTAGAGAAGTTGGAGGTTGCTTAAGATTATTTAATGACAGTGACCTTGACTTATAGGGGCATAGTGTGACACCCATGCTAGCCTTTATTTTTTTTGTGTCCCTTAAAGTTAAACTTGCGCCAATCAATAGAAGTATTGGCTTTCTATGCTGGTTCTATAACTTATCTCGTTTGGTACTGCAGGTGTTATGCTAGAATGATACCATAGATAAGTCTTAGATTTTGGTACCGCTTGCTATAAGACTGGTCTTTTGTCTTGGGAATTGGACTCTTAATTCTTTTTTGTATGATTCTTTCCTGCTTACAAATACTGAAAATGAATTAAATTAGCTAGCACATGTGTATAAGAACTAGGACAAAACATTCTCTTGTGAATTATATTTGCATAGATTGAACAGATGGAGATATTCTATTGAAACACATCATTTCAGGTTAAGA
>Glyma11g01420.3 sequence type=CDS gene model=Glyma11g01420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTGAAGATTCAAGGAAACGCACATTGGAGGCTTTGGAGAGAAGAATAGCTTTTGCTAAAGTTGAAGTTCTCCAAAAAGAAAAGAAAAACAAAAAGACTATAAATGAAGATGGGAAACTACCTATTCCTGCAGATTCTACTTCTAATGATCCTTCCCCACATTTGTTGCATTCATCATCAGTCTCATCCAAGAAAGGGAATTTCAGTTTCTCTGGTCATACCACTTTGCAAGACATTGAAGATGGTCCAGCATATGCCCAACTTTCTGTGCCTGTAAATGGAAATCTGCTCACAACTAATGAGGAGTTTTCTGCTGAAAGAGGAGGTTCAATTGATGGCATATTGCATGAGCTTCTTCAGAAGGGAGATGCAGCACATAAGTACATGCAAGGATCTAGAAACATGAAAATTGACAACTGGATCCTTCTTGATAATTATGTACAAGGACGGGTGCTTTCCTCTGGTTCTCAAGCTAGGGCTTTGCAACTTCATTCAAAACGCTCTAAGAAACACATGTCTATGAAACGGCATAAGAAGGATGGATCATTAGATCTTCCTCAAGAGTTCCAGAAATTTGATATTTTCAAGCCAATGCACGAAATGTGGAAAGATTACATAATGTTGCTTCTTAAATCCACTGGGAAAAATCAATTGGCTCAATGTCTCCTTGGTGCAGATCTACATGGTGCTTTTATTTTAGTTGTGGAGTGTAAAATAACCCATTTTACTGGAATTTGTGGCATCATGATTCGTGAAACTGCAGAAGCATTTGGGATAATTACTGAAGATAATAAATTCCGAGTTGTTCCCAAAAAGGTTTCTGTGTTTGTATTCCAAGTTGATTGCTGGAAAGTCACTCTGCATGGAGATAAACTTGGTTCAAGAAAGGTTGGATTATGA >Glyma11g01420.4 sequence type=CDS gene model=Glyma11g01420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTGAAGATTCAAGGAAACGCACATTGGAGGCTTTGGAGAGAAGAATAGCTTTTGCTAAAGTTGAAGTTCTCCAAAAAGAAAAGAAAAACAAAAAGACTATAAATGAAGATGGGAAACTACCTATTCCTGCAGATTCTACTTCTAATGATCCTTCCCCACATTTGTTGCATTCATCATCAGTCTCATCCAAGAAAGGGAATTTCAGTTTCTCTGGTCATACCACTTTGCAAGACATTGAAGATGGTCCAGCATATGCCCAACTTTCTGTGCCTGTAAATGGAAATCTGCTCACAACTAATGAGGAGTTTTCTGCTGAAAGAGGAGGTTCAATTGATGGCATATTGCATGAGCTTCTTCAGAAGGGAGATGCAGCACATAAGTACATGCAAGGATCTAGAAACATGAAAATTGACAACTGGATCCTTCTTGATAATTATGTACAAGGACGGGTGCTTTCCTCTGGTTCTCAAGCTAGGGCTTTGCAACTTCATTCAAAACGCTCTAAGAAACACATGTCTATGAAACGGCATAAGAAGGATGGATCATTAGATCTTCCTCAAGAGTTCCAGAAATTTGATATTTTCAAGCCAATGCACGAAATGTGGAAAGATTACATAATGTTGCTTCTTAAATCCACTGGGAAAAATCAATTGGCTCAATGTCTCCTTGGTGCAGATCTACATGGTGCTTTTATTTTAGTTGTGGAGTGTAAAATAACCCATTTTACTGGAATTTGTGGCATCATGATTCGTGAAACTGCAGAAGCATTTGGGATAATTACTGAAGATAATAAATTCCGAGTTGTTCCCAAAAAGGTTTCTGTGTTTGTATTCCAAGTTGATTGCTGGAAAGTCACTCTGCATGGAGATAAACTTGGTTCAAGAAAGGTTGGATTATGA
>Glyma11g01420.3 sequence type=predicted peptide gene model=Glyma11g01420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAEDSRKRTLEALERRIAFAKVEVLQKEKKNKKTINEDGKLPIPADSTSNDPSPHLLHSSSVSSKKGNFSFSGHTTLQDIEDGPAYAQLSVPVNGNLLTTNEEFSAERGGSIDGILHELLQKGDAAHKYMQGSRNMKIDNWILLDNYVQGRVLSSGSQARALQLHSKRSKKHMSMKRHKKDGSLDLPQEFQKFDIFKPMHEMWKDYIMLLLKSTGKNQLAQCLLGADLHGAFILVVECKITHFTGICGIMIRETAEAFGIITEDNKFRVVPKKVSVFVFQVDCWKVTLHGDKLGSRKVGL* >Glyma11g01420.4 sequence type=predicted peptide gene model=Glyma11g01420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAEDSRKRTLEALERRIAFAKVEVLQKEKKNKKTINEDGKLPIPADSTSNDPSPHLLHSSSVSSKKGNFSFSGHTTLQDIEDGPAYAQLSVPVNGNLLTTNEEFSAERGGSIDGILHELLQKGDAAHKYMQGSRNMKIDNWILLDNYVQGRVLSSGSQARALQLHSKRSKKHMSMKRHKKDGSLDLPQEFQKFDIFKPMHEMWKDYIMLLLKSTGKNQLAQCLLGADLHGAFILVVECKITHFTGICGIMIRETAEAFGIITEDNKFRVVPKKVSVFVFQVDCWKVTLHGDKLGSRKVGL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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