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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G31870 | AT | Annotation by Michelle Graham. TAIR10: Poly (ADP-ribose) glycohydrolase (PARG) | chr2:13549999-13553756 REVERSE LENGTH=548 | SoyBase | E_val: 0 | ISS |
| GO:0005975 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process | SoyBase | N/A | ISS |
| GO:0006970 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to osmotic stress | SoyBase | N/A | ISS |
| GO:0006979 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to oxidative stress | SoyBase | N/A | ISS |
| GO:0009414 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to water deprivation | SoyBase | N/A | ISS |
| GO:0050832 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to fungus | SoyBase | N/A | ISS |
| GO:0090332 | GO-bp | Annotation by Michelle Graham. GO Biological Process: stomatal closure | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0004649 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: poly(ADP-ribose) glycohydrolase activity | SoyBase | N/A | ISS |
| KOG2064 | KOG | Poly(ADP-ribose) glycohydrolase | JGI | ISS | |
| PTHR12837 | Panther | POLY(ADP-RIBOSE) GLYCOHYDROLASE | JGI | ISS | |
| PF05028 | PFAM | Poly (ADP-ribose) glycohydrolase (PARG) | JGI | ISS | |
| UniRef100_G7IZF8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Poly(ADP-ribose) glycohydrolase n=1 Tax=Medicago truncatula RepID=G7IZF8_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LFZ6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LFZ6_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma11g01253 not represented in the dataset |
Glyma11g01253 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g010700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g01253.1 sequence type=CDS gene model=Glyma11g01253 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAGAAAGAGAGGAGTTGCAATCGATTCTGGCATATCTACCCGTGGTCATGCGTTGTTCCTCTCCGTTTTGGCCGTCCCAAGCGGTGGAAACACTGAGAGAACTCGGAGGAGGGCGAGTCAACTCGGGCCACCACTTTTTCCAAGCCATTTCTGACCTCAGAAACGCCCTTTCTCTCTCTTCCGAACCCTTAGCCCCTTCCGCTCCGCATGGCTATGCCCTCTTCTTCGACGAGGTTATGTCTGGAGAGGAATCTAGCAAGTGGTTTCAGGAGGTGCTTCCCGCATTGGGGAATTTGCTTTTGAGGTTACCCTCTTTGTTGGAATCACACTATCAAAACACTGATAATATGGCTATAGATGGAGAGGCAGGAGCTATGCTCACTACTGCTCTTCGCTTGTTGGATTCACAGCAACCAGGGATAGTCTTCCTTACCCAGGAGTTGATTGCTGCTCTTCTTAGCTGCTCATTATTTTGTCTATTCCCAGTCAGTGACAGACCTGTGATACATCTTCCAATGATTAACTTCGATGTATTGTTTGGGAGTCTGTATGATGATTACAGTCAAAAACAGGAAAATAAGATTTGGTGCATCGTTCACTATTTTCAAAGGATAAGTTCTGAAATGCCCAAGGGTATTGTCTCATTTGAGCGAAAAGTACTTCCCTTCAAAAATGATTCTATTCATATTTCTTACCCAGATGCTAATTTTTGGAGCACTTCTGCTATACCTCTATGCAGATTTGAGGTTCACAGTTCAGGGCTCATAGAAGATCAATCAAGTGGAGCTGTTGAAGTAGATTTTGCAAATAAATATCTTGGGGGAGGTGCTCTTGGCAGGGGGTGTGTACAGGAGGAAATCCGCTTCATGGTCAGTCCAGAACTGATGGTTGGCATGCTTTTCTTGCCAGCTATGGCAGATAATGAGGCTATAGAAATTGTTGGTGTGGAAAGGTTCTCAAGTTATACAGGGTATGCTTCATCATTTCGATTTTCTGGTGATTATGTGGATGAAAGGGAAGTAGACACTCTTGGAAGACGGAAAACTAGGATTGTTGCAATTGATGCATTATGTAGCCCAGGGATGAGACAATACAGGGCAAATTTTCTCCTCCGTGAGATCAATAAGGCATTCTGCGGTTTTCTGTACCAATGTAAATATCAACCGTATCAGAAAATATTGCAAGAGAATGGATGTACATCTGCACTGTTCTATGCTGCCACCTCAACATCTATGGAAACAGATGAAGGAGAAATTTCTAACCACAAAATTACAAATTCTCAAAATGATTACCACGGGATGGATCAGGGCAATAATATTGGGGTTGCAACTGGAAACTGGGGATGTGGTGCCTTTGGAGGAGATCCTGAAGTAAAGACAATAATTCAGTGGCTTGCAGCTTCTCAGGCTCTAAGACCTTTCATAGCTTACTACACATTTGGCTTGGAGGCATTGCAGAGCCTAGACGAGGTTGCTCATTGGATTTTGTCTCAGAGATGGACAGTTGGGGACCTATGGAACATGCTAATTGAGTACTCAATAAATAGATCAAAAGGAGAAACTAATGTGGGCTTCCTTCAATGGCTCCTTCCATCAATATATGGCCATGGTGCTAGGATGGATTTGCCAAATCTGGCTTAA
>Glyma11g01253.1 sequence type=predicted peptide gene model=Glyma11g01253 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEEREELQSILAYLPVVMRCSSPFWPSQAVETLRELGGGRVNSGHHFFQAISDLRNALSLSSEPLAPSAPHGYALFFDEVMSGEESSKWFQEVLPALGNLLLRLPSLLESHYQNTDNMAIDGEAGAMLTTALRLLDSQQPGIVFLTQELIAALLSCSLFCLFPVSDRPVIHLPMINFDVLFGSLYDDYSQKQENKIWCIVHYFQRISSEMPKGIVSFERKVLPFKNDSIHISYPDANFWSTSAIPLCRFEVHSSGLIEDQSSGAVEVDFANKYLGGGALGRGCVQEEIRFMVSPELMVGMLFLPAMADNEAIEIVGVERFSSYTGYASSFRFSGDYVDEREVDTLGRRKTRIVAIDALCSPGMRQYRANFLLREINKAFCGFLYQCKYQPYQKILQENGCTSALFYAATSTSMETDEGEISNHKITNSQNDYHGMDQGNNIGVATGNWGCGAFGGDPEVKTIIQWLAASQALRPFIAYYTFGLEALQSLDEVAHWILSQRWTVGDLWNMLIEYSINRSKGETNVGFLQWLLPSIYGHGARMDLPNLA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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