Report for Sequence Feature Glyma11g01240
Feature Type: gene_model
Chromosome: Gm11
Start: 727649
stop: 732167
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma11g01240
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G65060 AT
Annotation by Michelle Graham. TAIR10: 4-coumarate:CoA ligase 3 | chr1:24167385-24171457 REVERSE LENGTH=561
SoyBase E_val: 0 ISS
GO:0008152 GO-bp
Annotation by Michelle Graham. GO Biological Process: metabolic process
SoyBase N/A ISS
GO:0009411 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to UV
SoyBase N/A ISS
GO:0009698 GO-bp
Annotation by Michelle Graham. GO Biological Process: phenylpropanoid metabolic process
SoyBase N/A ISS
GO:0009718 GO-bp
Annotation by Michelle Graham. GO Biological Process: anthocyanin-containing compound biosynthetic process
SoyBase N/A ISS
GO:0009744 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus
SoyBase N/A ISS
GO:0009813 GO-bp
Annotation by Michelle Graham. GO Biological Process: flavonoid biosynthetic process
SoyBase N/A ISS
GO:0010224 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to UV-B
SoyBase N/A ISS
GO:0010584 GO-bp
Annotation by Michelle Graham. GO Biological Process: pollen exine formation
SoyBase N/A ISS
GO:0005575 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cellular component
SoyBase N/A ISS
GO:0003824 GO-mf
Annotation by Michelle Graham. GO Molecular Function: catalytic activity
SoyBase N/A ISS
GO:0016207 GO-mf
Annotation by Michelle Graham. GO Molecular Function: 4-coumarate-CoA ligase activity
SoyBase N/A ISS
KOG1176
KOG
Acyl-CoA synthetase
JGI ISS
PTHR24096 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24096:SF43 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF00501 PFAM
AMP-binding enzyme
JGI ISS
UniRef100_Q8S5C2 UniRef
Annotation by Michelle Graham. Best UniRef hit: 4-coumarate:CoA ligase isoenzyme 3 n=1 Tax=Glycine max RepID=Q8S5C2_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q8S5C2 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: 4-coumarate:CoA ligase isoenzyme 3 n=1 Tax=Glycine max RepID=Q8S5C2_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma11g01240
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma11g01240
Paralog Evidence Comments
Glyma01g44270 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma11g01240 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.11g010500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma11g01240
Coding sequences of Glyma11g01240
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma11g01240.1 sequence type=CDS gene model=Glyma11g01240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCCTCCTATGCTGCTTCTCTTGATGCCAAAGAGGTGTCTACCTCCAAAACTGACCAAAACCAAGTGTGTGACTGTGATCCCCAAACTAGCCATGTCTTCAAATCAAAATTACCAGATATCCCAATCTCCAACCACCTCCCTCTCCACGCTTACTGCTTTCAGAAACTATCCCAATTCTCCGACCGCCCATGCCTCATCGTCGGACCCGCCGCCAAAACCTACACCTACTCCGAGACACACCTCATTTCACGCAAGATTGCCGCCGGATTGTCCAACCTCGGAATCCGCAAGGGCGACGTGGTCATGATCCTTCTCCAGAACTCCGCCGAGTTCGTCTTCTCCTTCCTCGCTGCCTCCATGATCGGCGCCGTCGCCACCACAGCCAATCCGTTCTACACCGCCGCGGAGATCTTCAAGCAGTTTACCGTCTCCAAGACGAAGCTGATCATAACGCAGGCAATGTACGTGGACAAGCTTCGCAACCACGACGACGGCGCGAAGCTCGGCGAGGACTTCAAGGTTGTGACCGTCGACGACCCGCCGGAAAATTGCCTCCACTTCTCGGTGCTCTCGGAGGCGAACGAGAGCGACGCGCCGGAGGTTGATATCCAACCCGACGACGCGGTGGCGATGCCGTTCTCTTCCGGCACGACGGGTTTACCTAAAGGAGTGGTTCTCACGCACAAGAGTTTAACAACCAGTGTGGCGCAACAAGTTGACGGAGAGAACCCTAACCTCTACCTCACCACCGAGGACGTGCTCCTATGCGTGCTTCCGTTGTTTCACATATTCTCCCTCAACAGTGTGCTTTTGTGCGCGCTTAGGGCCGGGAGTGCGGTTTTGTTGATGCAGAAGTTCGAGATTGGGACGCTGTTGGAGCTCATACAGCGGCACCGCGTGTCGGTGGCGATGGTGGTGCCGCCGCTGGTGCTGGCGTTGGCGAAGAATCCGATGGTGGCGGATTTTGACCTGAGTTCAATACGGTTAGTGCTGTCGGGAGCTGCTCCCTTGGGGAAGGAGCTCGTGGAAGCTCTCCGGAACAGGGTGCCTCAAGCCGTTTTGGGACAGTCGTATATTTTGGATCAAGTGATCCGGAGCATATGCGTTTTTTTTTTTCATTTTTATTTCATTCCCCTTTGTTTGCAACTTGAGGTGGTTAAACCTTTCCCAGTACGATATCTGAACGATGAGAAAGCGACAGCATTGACCATAGATTCAGAGGGTTGGCTTCACACCGGTGATGTTGGCTATGTAGATGAAGATGATGAAATTTTCATTGTTGACAGGGTGAAAGAACTCATCAAATATAAAGGCTTCCAGGTGCCCCCTGCAGAACTTGAAGGGCTTCTTGTAAGCCATCCCTCCATTGCAGACGCAGCTGTAGTCCCACAAAAGGATGTTGCTGCTGGTGAAGTTCCTGTTGCCTTCGTTGTGAGATCAAACGGCTTTGATCTAACTGAAGAGGCTGTAAAAGAGTTTATAGCTAAACAGGTAGTGTTTTACAAAAGACTGCACAAAGTTTATTTTGTACATGCTATTCCCAAGTCTCCATCAGGAAAGATATTAAGGAAAGACCTCAGAGCAAAGCTAGAAACCGCCGCCACTCAGACGCCTTAA
Predicted protein sequences of Glyma11g01240
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma11g01240.1 sequence type=predicted peptide gene model=Glyma11g01240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MASYAASLDAKEVSTSKTDQNQVCDCDPQTSHVFKSKLPDIPISNHLPLHAYCFQKLSQFSDRPCLIVGPAAKTYTYSETHLISRKIAAGLSNLGIRKGDVVMILLQNSAEFVFSFLAASMIGAVATTANPFYTAAEIFKQFTVSKTKLIITQAMYVDKLRNHDDGAKLGEDFKVVTVDDPPENCLHFSVLSEANESDAPEVDIQPDDAVAMPFSSGTTGLPKGVVLTHKSLTTSVAQQVDGENPNLYLTTEDVLLCVLPLFHIFSLNSVLLCALRAGSAVLLMQKFEIGTLLELIQRHRVSVAMVVPPLVLALAKNPMVADFDLSSIRLVLSGAAPLGKELVEALRNRVPQAVLGQSYILDQVIRSICVFFFHFYFIPLCLQLEVVKPFPVRYLNDEKATALTIDSEGWLHTGDVGYVDEDDEIFIVDRVKELIKYKGFQVPPAELEGLLVSHPSIADAAVVPQKDVAAGEVPVAFVVRSNGFDLTEEAVKEFIAKQVVFYKRLHKVYFVHAIPKSPSGKILRKDLRAKLETAATQTP*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
