Glyma11g01220 - SoyBase

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Report for Sequence Feature Glyma11g01220

Feature Type:	gene_model
Chromosome:	Gm11
Start:	707429
stop:	709513
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g01220

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G16880	AT	Annotation by Michelle Graham. TAIR10: Target of Myb protein 1 \| chr5:5549658-5551021 FORWARD LENGTH=297	SoyBase	E_val: 1.00E-79	ISS
GO:0006623	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole	SoyBase	N/A	ISS
GO:0006886	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular protein transport	SoyBase	N/A	ISS
GO:0006891	GO-bp	Annotation by Michelle Graham. GO Biological Process: intra-Golgi vesicle-mediated transport	SoyBase	N/A	ISS
GO:0016192	GO-bp	Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005795	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi stack	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0008565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein transporter activity	SoyBase	N/A	ISS
PTHR13856	Panther	VHS DOMAIN CONTAINING PROTEIN FAMILY	JGI		ISS
PTHR13856:SF27	Panther	TARGET OF MYB1 RELATED (TOM1 - RELATED)	JGI		ISS
PF00790	PFAM	VHS domain	JGI		ISS
UniRef100_G7K569	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Hepatocyte growth factor-regulated tyrosine kinase substrate n=1 Tax=Medicago truncatula RepID=G7K569_MEDTR	SoyBase	E_val: 4.00E-83	ISS
UniRef100_I1LFY9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LFY9_SOYBN	SoyBase	E_val: 6.00E-106	ISS

Expression Patterns of Glyma11g01220

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g01220 not represented in the dataset	Glyma11g01220 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma11g01220 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g010100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g01220

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma11g01220

Limit To All Plant Sequences

>Glyma11g01220.3   sequence type=transcript   gene model=Glyma11g01220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAGCGGTGGAAGAGAGATGAGTCGGAGTAGTGTTCTGGGATCATTGTTGTTGGGTAGGGAATAATGAGAGTGAAGAGTGAAGTGAGAGAGGGTAATGGACCAAAATAGCATATATTAAATTATAATGATGGAAGTGAGAGAGAGAGAGAAAAAAAAGACTTTACGGAGTCCTTGGGCGTTGTTTGGGAAACCTCTGGATTTGCATAAAGAAAGACGGAGATTAGAGAAGATGGAGAGCGTCTGAAAATCGGAGGCGTGGAAGTGGGGAGGAAGATGAGCTCGATGAGTTTCAAGGTCAAGGACTTCTTCAATGGTGGGCCCAATCAGGCCGACAAGCTTGTGGAGGACGCTACTTCCGAGGCCCTGGACGAGCCCGACTGGGCCCTAAATCTCGATCTCTGCGATCTCATCAACGCCGACAAGCTCAGTAGCGTCGAACTCGTCCGCGGAATCAAGAAGAGGATCGTCCTCAAGAGCCCTAGGGTTCAGTACCTCGCCCTTGTCCTCCTCGAAACCCTTGTCAAGAACTGCGAGAAGGCCTTCTCCGAAGTCGCCGCCGAGCGTGTCCTCGACGAGATGGTCAGGCTCATCGATGACCCTCAGACCGTCGTCAACAACCGCAACAAGGCCCTCATGATGATCGAAGCCTGGGCTGAGTCCACCGGCGAGTTGCGCTATCTCCCTGTCTACGAGGAAACTTACAAGTTTTAGGTCTGAACAGACCAAGGAAGCCTTTGATGTTGCGAGGAAATAGCATTGAGCTTCTTTCCACTGTGTTGTCGTCTTCACCCCAACAAGATGCTTTGCAGGTATATGGTATGAGTTTAACCACATCATCTTCTTCTTCCCTAGTCTCTCCAGTAATGAGAGTTTTCTTTCCCCCCATTGGCCATTATAATGCAATGATAGGTATTGCTTATCTGAAATTCTGAATCACTGAGAGGATGAGAATCAAGATGTGCTATTTACTATTTAGGGTGCATTTAGAAGAGTTAATTTATAGCTTATTTGAATACGCTCC

>Glyma11g01220.5   sequence type=transcript   gene model=Glyma11g01220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAGCGGTGGAAGAGAGATGAGTCGGAGTAGTGTTCTGGGATCATTGTTGTTGGGTAGGGAATAATGAGAGTGAAGAGTGAAGTGAGAGAGGGTAATGGACCAAAATAGCATATATTAAATTATAATGATGGAAGTGAGAGAGAGAGAGAAAAAAAAGACTTTACGGAGTCCTTGGGCGTTGTTTGGGAAACCTCTGGATTTGCATAAAGAAAGACGGAGATTAGAGAAGATGGAGAGCGTCTGAAAATCGGAGGCGTGGAAGTGGGGAGGAAGATGAGCTCGATGAGTTTCAAGGTCAAGGACTTCTTCAATGGTGGGCCCAATCAGGCCGACAAGCTTGTGGAGGACGCTACTTCCGAGGCCCTGGACGAGCCCGACTGGGCCCTAAATCTCGATCTCTGCGATCTCATCAACGCCGACAAGCTCAGTAGCGTCGAACTCGTCCGCGGAATCAAGAAGAGGATCGTCCTCAAGAGCCCTAGGGTTCAGTACCTCGCCCTTGTCCTCCTCGAAACCCTTGTCAAGAACTGCGAGAAGGCCTTCTCCGAAGTCGCCGCCGAGCGTGTCCTCGACGAGATGGTCAGGCTCATCGATGACCCTCAGACCGTCGTCAACAACCGCAACAAGGCCCTCATGATGATCGAAGCCTGGGCTGAGTCCACCGGCGAGTTGCGCTATCTCCCTGTCTACGAGGAAACTTACAAGTTTTAGGTCTGAACAGACCAAGGAAGCCTTTGATGTTGCGAGGAAATAGCATTGAGCTTCTTTCCACTGTGTTGTCGTCTTCACCCCAACAAGATGCTTTGCAGGTATATGGATGATTTGACCACCACACTTGTAAAGTAGTGTTCTCGGTCACAAACTACTGGACAGCCTGAACCAGAGCTATGATACCTGTTAAGCCTAACCAGCTTTCTGGACCAAATTAGAACTTCTAGTCTCTGTGATCTGTTACTTAGATTCTTATTTGTTGGTATATGGTAATACCAAATTAGAACTTACTCATATGTATAAGTTCTGTATAAGTTTCGGGTCTATTCTCATTTCTTATCTAAGACAACCACCAGATTCACAATTTCCAATCTAAATAAATAGAAGGGCAGTAGAGGTGTGACATTTTGACATTCTGAGTTGTAAAAAACGCTCAAGAAAGATATAATATAAAATAAGAATTTGCTAAT

>Glyma11g01220.6   sequence type=transcript   gene model=Glyma11g01220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAGCGGTGGAAGAGAGATGAGTCGGAGTAGTGTTCTGGGATCATTGTTGTTGGGTAGGGAATAATGAGAGTGAAGAGTGAAGTGAGAGAGGGTAATGGACCAAAATAGCATATATTAAATTATAATGATGGAAGTGAGAGAGAGAGAGAAAAAAAAGACTTTACGGAGTCCTTGGGCGTTGTTTGGGAAACCTCTGGATTTGCATAAAGAAAGACGGAGATTAGAGAAGATGGAGAGCGTCTGAAAATCGGAGGCGTGGAAGTGGGGAGGAAGATGAGCTCGATGAGTTTCAAGGTCAAGGACTTCTTCAATGGTGGGCCCAATCAGGCCGACAAGCTTGTGGAGGACGCTACTTCCGAGGCCCTGGACGAGCCCGACTGGGCCCTAAATCTCGATCTCTGCGATCTCATCAACGCCGACAAGCTCAGTAGCGTCGAACTCGTCCGCGGAATCAAGAAGAGGATCGTCCTCAAGAGCCCTAGGGTTCAGTACCTCGCCCTTGTCCTCCTCGAAACCCTTGTCAAGAACTGCGAGAAGGCCTTCTCCGAAGTCGCCGCCGAGCGTGTCCTCGACGAGATGGTCAGGCTCATCGATGACCCTCAGACCGTCGTCAACAACCGCAACAAGGCCCTCATGATGATCGAAGCCTGGGCTGAGTCCACCGGCGAGTTGCGCTATCTCCCTGTCTACGAGGAAACTTACAAGTTTTAGGTCTGAACAGACCAAGGAAGCCTTTGATGTTGCGAGGAAATAGCATTGAGCTTCTTTCCACTGTGTTGTCGTCTTCACCCCAACAAGATGCTTTGCAGGATGATTTGACCACCACACTTGTAAAGTAGTGTTCTCGGTCACAAACTACTGGACAGCCTGAACCAGAGCTATGATACCTGTTAAGCCTAACCAGCTTTCTGGACCAAATTAGAACTTCTAGTCTCTGTGATCTGTTACTTAGATTCTTATTTGTTGGTATATGGTAATACCAAATTAGAACTTACTCATATGTATAAGTTCTGTATAAGTTTCGGGTCTATTCTCATTTCTTATCTAAGACAACCACCAGATTCACAATTTCCAATCTAAATAAATAGAAGGGCAGTAGAGGTGTGACATTTTGACATTCTGAGTTGTAAAAAACGCTCAAGAAAGATATAATATAAAATAAGAATTTGCTAAT

Coding sequences of Glyma11g01220

Limit To All Plant Sequences

>Glyma11g01220.1   sequence type=CDS   gene model=Glyma11g01220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCTCGATGAGTTTCAAGGTCAAGGACTTCTTCAATGGTGGGCCCAATCAGGCCGACAAGCTTGTGGAGGACGCTACTTCCGAGGCCCTGGACGAGCCCGACTGGGCCCTAAATCTCGATCTCTGCGATCTCATCAACGCCGACAAGCTCAGTAGCGTCGAACTCGTCCGCGGAATCAAGAAGAGGATCGTCCTCAAGAGCCCTAGGGTTCAGTACCTCGCCCTTGTCCTCCTCGAAACCCTTGTCAAGAACTGCGAGAAGGCCTTCTCCGAAGTCGCCGCCGAGCGTGTCCTCGACGAGATGGTCAGGCTCATCGATGACCCTCAGACCGTCGTCAACAACCGCAACAAGGCCCTCATGATGATCGAAGCCTGGGCTGAGTCCACCGGCGAGTTGCGCTATCTCCCTGTCTACGAGGAAACTTACAAGGATGATTTGACCACCACACTTGTAAAGTAG

>Glyma11g01220.3   sequence type=CDS   gene model=Glyma11g01220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCTCGATGAGTTTCAAGGTCAAGGACTTCTTCAATGGTGGGCCCAATCAGGCCGACAAGCTTGTGGAGGACGCTACTTCCGAGGCCCTGGACGAGCCCGACTGGGCCCTAAATCTCGATCTCTGCGATCTCATCAACGCCGACAAGCTCAGTAGCGTCGAACTCGTCCGCGGAATCAAGAAGAGGATCGTCCTCAAGAGCCCTAGGGTTCAGTACCTCGCCCTTGTCCTCCTCGAAACCCTTGTCAAGAACTGCGAGAAGGCCTTCTCCGAAGTCGCCGCCGAGCGTGTCCTCGACGAGATGGTCAGGCTCATCGATGACCCTCAGACCGTCGTCAACAACCGCAACAAGGCCCTCATGATGATCGAAGCCTGGGCTGAGTCCACCGGCGAGTTGCGCTATCTCCCTGTCTACGAGGAAACTTACAAGTTTTAG

>Glyma11g01220.5   sequence type=CDS   gene model=Glyma11g01220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCTCGATGAGTTTCAAGGTCAAGGACTTCTTCAATGGTGGGCCCAATCAGGCCGACAAGCTTGTGGAGGACGCTACTTCCGAGGCCCTGGACGAGCCCGACTGGGCCCTAAATCTCGATCTCTGCGATCTCATCAACGCCGACAAGCTCAGTAGCGTCGAACTCGTCCGCGGAATCAAGAAGAGGATCGTCCTCAAGAGCCCTAGGGTTCAGTACCTCGCCCTTGTCCTCCTCGAAACCCTTGTCAAGAACTGCGAGAAGGCCTTCTCCGAAGTCGCCGCCGAGCGTGTCCTCGACGAGATGGTCAGGCTCATCGATGACCCTCAGACCGTCGTCAACAACCGCAACAAGGCCCTCATGATGATCGAAGCCTGGGCTGAGTCCACCGGCGAGTTGCGCTATCTCCCTGTCTACGAGGAAACTTACAAGTTTTAG

>Glyma11g01220.6   sequence type=CDS   gene model=Glyma11g01220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCTCGATGAGTTTCAAGGTCAAGGACTTCTTCAATGGTGGGCCCAATCAGGCCGACAAGCTTGTGGAGGACGCTACTTCCGAGGCCCTGGACGAGCCCGACTGGGCCCTAAATCTCGATCTCTGCGATCTCATCAACGCCGACAAGCTCAGTAGCGTCGAACTCGTCCGCGGAATCAAGAAGAGGATCGTCCTCAAGAGCCCTAGGGTTCAGTACCTCGCCCTTGTCCTCCTCGAAACCCTTGTCAAGAACTGCGAGAAGGCCTTCTCCGAAGTCGCCGCCGAGCGTGTCCTCGACGAGATGGTCAGGCTCATCGATGACCCTCAGACCGTCGTCAACAACCGCAACAAGGCCCTCATGATGATCGAAGCCTGGGCTGAGTCCACCGGCGAGTTGCGCTATCTCCCTGTCTACGAGGAAACTTACAAGTTTTAG

Predicted protein sequences of Glyma11g01220

Limit To All Plant Sequences

>Glyma11g01220.1   sequence type=predicted peptide   gene model=Glyma11g01220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSMSFKVKDFFNGGPNQADKLVEDATSEALDEPDWALNLDLCDLINADKLSSVELVRGIKKRIVLKSPRVQYLALVLLETLVKNCEKAFSEVAAERVLDEMVRLIDDPQTVVNNRNKALMMIEAWAESTGELRYLPVYEETYKDDLTTTLVK*

>Glyma11g01220.3   sequence type=predicted peptide   gene model=Glyma11g01220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSMSFKVKDFFNGGPNQADKLVEDATSEALDEPDWALNLDLCDLINADKLSSVELVRGIKKRIVLKSPRVQYLALVLLETLVKNCEKAFSEVAAERVLDEMVRLIDDPQTVVNNRNKALMMIEAWAESTGELRYLPVYEETYKF*

>Glyma11g01220.5   sequence type=predicted peptide   gene model=Glyma11g01220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSMSFKVKDFFNGGPNQADKLVEDATSEALDEPDWALNLDLCDLINADKLSSVELVRGIKKRIVLKSPRVQYLALVLLETLVKNCEKAFSEVAAERVLDEMVRLIDDPQTVVNNRNKALMMIEAWAESTGELRYLPVYEETYKF*

>Glyma11g01220.6   sequence type=predicted peptide   gene model=Glyma11g01220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSMSFKVKDFFNGGPNQADKLVEDATSEALDEPDWALNLDLCDLINADKLSSVELVRGIKKRIVLKSPRVQYLALVLLETLVKNCEKAFSEVAAERVLDEMVRLIDDPQTVVNNRNKALMMIEAWAESTGELRYLPVYEETYKF*

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