SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G49530 | AT | Annotation by Michelle Graham. TAIR10: SIN-like family protein | chr5:20100934-20104242 FORWARD LENGTH=689 | SoyBase | E_val: 2.00E-158 | ISS |
| GO:0006351 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003899 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA-directed RNA polymerase activity | SoyBase | N/A | ISS |
| KOG2354 | KOG | RNA Polymerase C (III) 37 kDa subunit | JGI | ISS | |
| PTHR12069 | Panther | DNA-DIRECTED RNA POLYMERASES III 80 KDA POLYPEPTIDE (RNA POLYMERASE III SUBUNIT 5) | JGI | ISS | |
| PF04801 | PFAM | Sin-like protein conserved region | JGI | ISS | |
| UniRef100_G7ZW30 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DNA-directed RNA polymerase III subunit RPC5 n=1 Tax=Medicago truncatula RepID=G7ZW30_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LFY7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LFY7_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma11g01200 not represented in the dataset |
Glyma11g01200 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g44321 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g009900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g01200.1 sequence type=CDS gene model=Glyma11g01200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGACTTTGACGACTTAGAAGAAGCGCCGATAAAGGCCACGTCTCGAGTCTCCAAGTTCGCGCCAAAATCATCAAAGCTCAAACCTAAACCAAAATCAGAACCTGCCCCCCCCAAACCTGAACCCCAACCACCCATCTCCAAACCAGAGCCTCAGGAATTCGTTGCAGCAACTGTCAAAAAGAATGAAGATGATGGCGTCGAAACAGTGCCACCAACTCATACGAAACCCGAACTCGACGCCACTGTCAAAATGGAGGAGGCCGAAGACGAACCAGAATCAGTTCGAGACGATCCCATAGACGAAGATATCCCTGAAGAAGACACAGTTGTGCGCGAAATTGATGTCTTCTTCTCTCCTTCTGTCGATGCCCAGACTCAGCTATACGTCTTTCAGTATCCCTTGAGACCTTCTTGGCGACCGTACGATTTGGATGAACAATGCGAAGAGGTAAGGTTGAAGACTAAAACTTCAGAAGTGGAGATTGATTTATCCATTGATCTTGACTCGGACCATATTGACAAAGAGTTTGCCACCAAATACAACATCACAAAGCAGACTTTATCAACTACGTGGAAGCCATCTCATGCAAATGGATGTGCTGTTGGGCTTCTTATGGGTGATAAGTTACACCTGCATCCAGTTCATGCAGTTGTGCAGCTCCGACCAACATTACAACATCTTAATTCTGGTGGTTCAAAACGGAAGAACGCTGCCTCCACTGGAGCAAATGCTACTGTCAAAATTGAGGGCTCAAATGAAGAGAAGTCTGTTGCTACATCAAAGAAGCAGAATAAGCAGACAGGACCTTCTATTATTGAGCAAAAGAGTGATGGTGATGAGTGCTGGGTTCCTCTAAAGTACCATAGCTGCAAGAGTGATATATCCTCTAGATATTTGCAGCAAATGGTGACACAAGAAAGTTCTCCTATAAACTTCACAATGAGAGCGTATGATTATGTTACTGCACTGTGTCCTGGTGGGAGCAGCAACAATTTACCAAAAGGTCTTTCTAAAAGGTATCTTCTATCATTGCCCGTGGAAGAGCGTCTTAAGAAAATGCTTGAGGATCGTCCACTTCATCGTTTCAGTGCTATTAAGCACTTTGCTCCAGAATATTCCGAGAATGAACTTCTAGGATTCCTGCAGCAGCATGCAATATTGGTGTGGGGACTATGGACTGCAAAAAGTTCATTGCTATATCCTGATGGTGGTGTGGAAACTTTGGCCAGAGATTATTCCCTACTATTGTTTAGCAAGAGTTTGAAAGTTCAGTTTTCTGATGTGAGTATTCGAGGAGGTGAACTTGTTAATCGTGTGAGAAACTGCCTGAAGATATTTGGCGTGGAAAGAAATGATCTTGATAAATCTACTGGAAAACCAAATCCTTACTGGAAGTTCAGAGAGCTTCCTGACGAGTCATTCAAAAAACTCTATCCAGATATTGTTGAAAAACAGGAAGAACTTTTCAAAGGTTTGGAAAAACAGTTATCTGGTTTTTCTTCGAATGTTGGAAAACGTAAAATTGGTAAAAATGCTGTAGCAAACCAAGGTGTGAACACTGAGGTTCATAAATCAGAAAGTTCAGATCAACGGGTAACAAGTCTGGGCAGAGTGCCTCCTGCGAAAATGACCATGTCAAATGAAACCCGACATGCTCTGCCAATTGCCCTGAAGAAACTTTTTCAGACTCACAAAGTTTGCAGCTTCAAATTGATATGCGAAGGATTGCGCGAAATGGCAGTTTCCAAAGCTATGCTTTCAAAGGGAGATTCTAAAATGGCTGTGGATGCAGCTCACAGTCTTGATGGTCCCCATAATGAGTTGATGGCTGTCATAAGTGAAGTTGCATGCGAAATCAATGGTTCTTATGTGCTGAAGTCATCACCCGATGATCCATTCAGGGATGTTGTAATTGATATGCTTTGTGGAAGTGGACCCAATGCCAAGCTGAAGAAGGCTGAGATACTTGAAGCTGCCAGAAGAAAACTCGGTAGGGAGGTCGCTAGCAATGAATATACCAAGGTCATGAGCGAGTTATGTGTGTCAAAAGGTTCTGTTTGGGTCTTGAAAAGCGGTGATGGAAGTAAGTAA
>Glyma11g01200.1 sequence type=predicted peptide gene model=Glyma11g01200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDFDDLEEAPIKATSRVSKFAPKSSKLKPKPKSEPAPPKPEPQPPISKPEPQEFVAATVKKNEDDGVETVPPTHTKPELDATVKMEEAEDEPESVRDDPIDEDIPEEDTVVREIDVFFSPSVDAQTQLYVFQYPLRPSWRPYDLDEQCEEVRLKTKTSEVEIDLSIDLDSDHIDKEFATKYNITKQTLSTTWKPSHANGCAVGLLMGDKLHLHPVHAVVQLRPTLQHLNSGGSKRKNAASTGANATVKIEGSNEEKSVATSKKQNKQTGPSIIEQKSDGDECWVPLKYHSCKSDISSRYLQQMVTQESSPINFTMRAYDYVTALCPGGSSNNLPKGLSKRYLLSLPVEERLKKMLEDRPLHRFSAIKHFAPEYSENELLGFLQQHAILVWGLWTAKSSLLYPDGGVETLARDYSLLLFSKSLKVQFSDVSIRGGELVNRVRNCLKIFGVERNDLDKSTGKPNPYWKFRELPDESFKKLYPDIVEKQEELFKGLEKQLSGFSSNVGKRKIGKNAVANQGVNTEVHKSESSDQRVTSLGRVPPAKMTMSNETRHALPIALKKLFQTHKVCSFKLICEGLREMAVSKAMLSKGDSKMAVDAAHSLDGPHNELMAVISEVACEINGSYVLKSSPDDPFRDVVIDMLCGSGPNAKLKKAEILEAARRKLGREVASNEYTKVMSELCVSKGSVWVLKSGDGSK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
