SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G11755 | AT | Annotation by Michelle Graham. TAIR10: Undecaprenyl pyrophosphate synthetase family protein | chr1:3969987-3971488 REVERSE LENGTH=254 | SoyBase | E_val: 3.00E-75 | ISS |
| KOG2818 | KOG | Predicted undecaprenyl diphosphate synthase | JGI | ISS | |
| PTHR21528 | Panther | UNCHARACTERIZED | JGI | ISS | |
| UniRef100_G7K548 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Nogo-B receptor n=1 Tax=Medicago truncatula RepID=G7K548_MEDTR | SoyBase | E_val: 1.00E-127 | ISS |
| UniRef100_I1LFX2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LFX2_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma11g01120 not represented in the dataset |
Glyma11g01120 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g44400 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g009100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g01120.3 sequence type=transcript gene model=Glyma11g01120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GCGGCAGAGCAAATACATTGCAGGTTATCTTTCATCTCAGAACGTCTGATTTGAGCCTCTCTCAGTGACAACAGTTTCTGAGTCTTACTGATCTTTTCTTCTCTCTAATCTCTTGTGATTTTTCTTCTCTCTAATCTCTTGGTTGCGTGGCAGACTAAATGATTTTGTGTTTTTGGTTCTCTTTTAGGTTGGAAATCTTGGGCTTCAGCTGCCATGGTACTTTCTGCAAATAATTGTCAGCGCATGGTATTTCATATCAGTCGTGGGTAATTTGTTTGAAAGCTATTTCATCTCTTTAAAGAAATACAAGTCTCTTCATTCGGGAAAGGTTCGGTACCTTGCCATTGTCATAGAAAGTGAAGAAGCTTATCAGATTTCCAAAGTTGTTAAACTTTCGCAGTGGCTTGACTCTATTGGTGTAAAGAATGTGTGCCTTTATGACATGAATGGTATGAAAAGGTTTGAAGAATCAGTGATGTTAAAGTTTCTTTTACTCGGGCCATATAATAGTATTTTCTTTGAACTCTTCATCCTAGGAGTATTGAAGAAGTCTAAGGAAACCATGTTTCAAAAATTGAAGAATGCAAAATCCATTGAGGAAGTTAGTGAAGTCGTCACACTCCATGCTCCAGATCACATGACTTTAGAATTTCTTTCTTATCTGGATGGGAAGGAGGCAGTGGCCAAAGCAGCTAACTTGATTTTTGTGGAAAACTCGAAACGACATAACTTGGGTGGAGAACTAGATCTTCAAATCTTGTTAGAACCTCAAATGAATAAAGCATTGCAAATTGTTGGTAGCAAAGGCCCCGAGCCTGACCTTTTATTGGTTTATGGACCTGTGAGGAGCCATCTTGGTTTTCCTGCATGGAGACTTCGTTACACAGAGATCATACATATGGGATCATTGAACTTCATGAGATATGGTTCCTTAATGAAAGTCATTAACAACTTCACGAAAGTGCACCAAAATTATGGTACGTAGAAAAGGAATTTGGAGGTAGTTAACTGCGCAAGCACAAAGCATAGGCGTGAAGAATAGAAACATATCTAGCTAAAATCTTTGTGGAAAAAAGGACTTACTCAGTCTTAACTACTGGTTTTACTTACTTTAAATGTGTCAGTCATCATGAGAGATAGAATTGCAAGTCATGACCTGGTTTTACCAACTGTTAATTTAAAAAAGATTTGGTAATTTAAAAGTTGGATTTTTATTTGATACCACC
>Glyma11g01120.1 sequence type=CDS gene model=Glyma11g01120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATTTTGTGTTTTTGGTTCTCTTTTAGGCTTGTACAGGTTGGAAATCTTGGGCTTCAGCTGCCATGGTACTTTCTGCAAATAATTGTCAGCGCATGGTATTTCATATCAGTCGTGGGTAATTTGTTTGAAAGCTATTTCATCTCTTTAAAGAAATACAAGTCTCTTCATTCGGGAAAGGTTCGGTACCTTGCCATTGTCATAGAAAGTGAAGAAGCTTATCAGATTTCCAAAGTTGTTAAACTTTCGCAGTGGCTTGACTCTATTGGTGTAAAGAATGTGTGCCTTTATGACATGAATGGAGTATTGAAGAAGTCTAAGGAAACCATGTTTCAAAAATTGAAGAATGCAAAATCCATTGAGGAAGTTAGTGAAGTCGTCACACTCCATGCTCCAGATCACATGACTTTAGAATTTCTTTCTTATCTGGATGGGAAGGAGGCAGTGGCCAAAGCAGCTAACTTGATTTTTGTGGAAAACTCGAAACGACATAACTTGGGTGGAGAACTAGATCTTCAAATCTTGTTAGAACCTCAAATGAATAAAGCATTGCAAATTGTTGGTAGCAAAGGCCCCGAGCCTGACCTTTTATTGGTTTATGGACCTGTGAGGAGCCATCTTGGTTTTCCTGCATGGAGACTTCGTTACACAGAGATCATACATATGGGATCATTGAACTTCATGAGATATGGTTCCTTAATGAAAGTCATTAACAACTTCACGAAAGTGCACCAAAATTATGGTACGTAG >Glyma11g01120.3 sequence type=CDS gene model=Glyma11g01120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAATGGTATGAAAAGGTTTGAAGAATCAGTGATGTTAAAGTTTCTTTTACTCGGGCCATATAATAGTATTTTCTTTGAACTCTTCATCCTAGGAGTATTGAAGAAGTCTAAGGAAACCATGTTTCAAAAATTGAAGAATGCAAAATCCATTGAGGAAGTTAGTGAAGTCGTCACACTCCATGCTCCAGATCACATGACTTTAGAATTTCTTTCTTATCTGGATGGGAAGGAGGCAGTGGCCAAAGCAGCTAACTTGATTTTTGTGGAAAACTCGAAACGACATAACTTGGGTGGAGAACTAGATCTTCAAATCTTGTTAGAACCTCAAATGAATAAAGCATTGCAAATTGTTGGTAGCAAAGGCCCCGAGCCTGACCTTTTATTGGTTTATGGACCTGTGAGGAGCCATCTTGGTTTTCCTGCATGGAGACTTCGTTACACAGAGATCATACATATGGGATCATTGAACTTCATGAGATATGGTTCCTTAATGAAAGTCATTAACAACTTCACGAAAGTGCACCAAAATTATGGTACGTAG
>Glyma11g01120.1 sequence type=predicted peptide gene model=Glyma11g01120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MILCFWFSFRLVQVGNLGLQLPWYFLQIIVSAWYFISVVGNLFESYFISLKKYKSLHSGKVRYLAIVIESEEAYQISKVVKLSQWLDSIGVKNVCLYDMNGVLKKSKETMFQKLKNAKSIEEVSEVVTLHAPDHMTLEFLSYLDGKEAVAKAANLIFVENSKRHNLGGELDLQILLEPQMNKALQIVGSKGPEPDLLLVYGPVRSHLGFPAWRLRYTEIIHMGSLNFMRYGSLMKVINNFTKVHQNYGT* >Glyma11g01120.3 sequence type=predicted peptide gene model=Glyma11g01120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNGMKRFEESVMLKFLLLGPYNSIFFELFILGVLKKSKETMFQKLKNAKSIEEVSEVVTLHAPDHMTLEFLSYLDGKEAVAKAANLIFVENSKRHNLGGELDLQILLEPQMNKALQIVGSKGPEPDLLLVYGPVRSHLGFPAWRLRYTEIIHMGSLNFMRYGSLMKVINNFTKVHQNYGT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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