Glyma11g01090 - SoyBase

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Report for Sequence Feature Glyma11g01090

Feature Type:	gene_model
Chromosome:	Gm11
Start:	602588
stop:	605501
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g01090

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G13270	AT	Annotation by Michelle Graham. TAIR10: Pentatricopeptide repeat (PPR) superfamily protein \| chr5:4246954-4249212 REVERSE LENGTH=752	SoyBase	E_val: 0	ISS
GO:0009451	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA modification	SoyBase	N/A	ISS
GO:0016556	GO-bp	Annotation by Michelle Graham. GO Biological Process: mRNA modification	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24015:SF154	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_D7M586	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7M586_ARALL	SoyBase	E_val: 0	ISS
UniRef100_I1LFW9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LFW9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g01090

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g01090

Paralog	Evidence	Comments
Glyma01g44440	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g01090 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g008800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g01090

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma11g01090

Limit To All Plant Sequences

>Glyma11g01090.1   sequence type=CDS   gene model=Glyma11g01090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACATAGCCGGGATTTCCATTAATCCCCGATCATACGAATACCTCTTTAAAATGTGTGGAACATTGGGTGCATTGTCTGATGGAAAATTGTTTCATAATAGACTGCAGAGAATGGCCAATAGCAATAAGTTCATTGATAATTGCATCCTTCAAATGTATTGCGACTGTAAGAGTTTCACAGCTGCAGAGAGATTCTTTGATAAAATAGTTGATCGGGATTTGTCCTCTTGGGCCACCATTATATCTGCTTACACTGAGGAAGGACGTATAGACGAAGCTGTTGGATTGTTCTTGCGTATGCTGGATTTGGGGATTATTCCAAACTTCTCTATCTTCAGTACTCTTATAATGTCATTTGCAGATCCTTCAATGTTAGACCTTGGCAAACAGATACATTCTCAGCTGATAAGGATTGAGTTTGCTGCTGATATTTCTATTGAGACATTAATCTCCAATATGTATGTAAAGTGTGGGTGGTTGGATGGTGCTGAAGTGGCCACCAATAAGATGACTAGGAAAAGTGCTGTGGCTTGCACTGGGTTGATGGTGGGCTATACTCAAGCTGCAAGGAACAGGGATGCTCTGTTGTTATTTTCCAAGATGATAAGTGAAGGTGTAGAGTTGGATGGGTTTGTTTTTTCAATAATTCTCAAGGCTTGTGCTGCTTTAGGAGACTTATACACTGGAAAGCAAATTCATAGTTACTGTATAAAACTTGGCTTGGAATCCGAGGTCTCCGTTGGTACTCCACTAGTGGATTTTTATGTTAAGTGTGCAAGGTTTGAAGCTGCGCGTCAAGCATTTGAGAGCATACATGAACCAAATGATTTCTCATGGAGTGCTTTAATCGCTGGATATTGCCAAAGTGGTAAATTTGACAGGGCTCTTGAGGTTTTTAAGACAATAAGAAGTAAAGGAGTGTTATTGAATTCATTCATCTATAACAACATTTTCCAAGCATGCTCTGCTGTCTCAGATTTGATTTGCGGTGCTCAAATCCATGCAGATGCAATAAAGAAGGGGCTAGTTGCATACCTCTCTGGGGAGAGTGCTATGATCACTATGTACTCAAAATGCGGCAAAGTGGACTATGCACATCAAGCATTTTTGGCAATAGATAAACCTGATACTGTTGCATGGACTGCAATAATATGTGCTCATGCTTACCATGGCAAAGCTTCTGAAGCTTTAAGGCTTTTTAAAGAGATGCAGGGGTCTGGTGTAAGGCCAAATGTGGTCACTTTCATAGGTTTGTTAAATGCTTGCAGTCATTCAGGTTTAGTTAAAGAGGGAAAGCAGTTTTTGGATTCAATGACTGACAAATATGGTGTGAACCCAACAATTGATCATTACAATTGCATGATTGATATATACTCTCGTGCTGGACTGCTGCTGGAGGCTCTTGAGGTGATAAGGAGTATGCCATTTGAGCCTGATGTTATGAGTTGGAAGAGTTTATTAGGAGGATGTTGGAGCCGGCGGAATCTTGAGATTGGGATGATTGCTGCTGACAACATCTTTCGCCTGGACCCACTAGACTCTGCTACTTATGTGATCATGTTCAACTTGTATGCTTTGGCTGGGAAGTGGGATGAAGCAGCACAATTTAGAAAGATGATGGCTGAAAGGAACTTGAGGAAGGAAGTCAGTTGCAGCTGGATTATTGTGAAGGGTAAAGTCCACCGTTTTGTGGTAGGTGATAGACACCACCCTCAAACAGAACAAATATACTCAAAATTAAAAGAACTCAATGTTTCTTTCAAAAAGGGTGAGGAGCGCCTTCTCAATGAAGAAAATGCTCTATGTGACTTTACTGAACGAAAAGATCAACTTCTTGATCATAGTGAAAGACTAGCTATAGCCTATGGTCTCATATGCACTGCAGCTGATACCCCCATTATGGTATTCAAAAATACACGATCATGCAAAGACTGCCATGAATTTGCAAAAAGAGTCTCAGTAGTAACTGGTCGTGAATTAGTTGTGAGAGATGGCAACAGGTTTCATCATATTAATTCAGGGGAATGTTCTTGCCGTGATTATTGGTGA

Predicted protein sequences of Glyma11g01090

Limit To All Plant Sequences

>Glyma11g01090.1   sequence type=predicted peptide   gene model=Glyma11g01090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDIAGISINPRSYEYLFKMCGTLGALSDGKLFHNRLQRMANSNKFIDNCILQMYCDCKSFTAAERFFDKIVDRDLSSWATIISAYTEEGRIDEAVGLFLRMLDLGIIPNFSIFSTLIMSFADPSMLDLGKQIHSQLIRIEFAADISIETLISNMYVKCGWLDGAEVATNKMTRKSAVACTGLMVGYTQAARNRDALLLFSKMISEGVELDGFVFSIILKACAALGDLYTGKQIHSYCIKLGLESEVSVGTPLVDFYVKCARFEAARQAFESIHEPNDFSWSALIAGYCQSGKFDRALEVFKTIRSKGVLLNSFIYNNIFQACSAVSDLICGAQIHADAIKKGLVAYLSGESAMITMYSKCGKVDYAHQAFLAIDKPDTVAWTAIICAHAYHGKASEALRLFKEMQGSGVRPNVVTFIGLLNACSHSGLVKEGKQFLDSMTDKYGVNPTIDHYNCMIDIYSRAGLLLEALEVIRSMPFEPDVMSWKSLLGGCWSRRNLEIGMIAADNIFRLDPLDSATYVIMFNLYALAGKWDEAAQFRKMMAERNLRKEVSCSWIIVKGKVHRFVVGDRHHPQTEQIYSKLKELNVSFKKGEERLLNEENALCDFTERKDQLLDHSERLAIAYGLICTAADTPIMVFKNTRSCKDCHEFAKRVSVVTGRELVVRDGNRFHHINSGECSCRDYW*

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