SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G22590 | AT | Annotation by Michelle Graham. TAIR10: PLANT HOMOLOGOUS TO PARAFIBROMIN | chr3:8003999-8005452 FORWARD LENGTH=415 | SoyBase | E_val: 0 | ISS |
| GO:0009911 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of flower development | SoyBase | N/A | ISS |
| GO:0010228 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem | SoyBase | N/A | ISS |
| GO:0051568 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone H3-K4 methylation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0070860 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: RNA polymerase I core factor complex | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| KOG3786 | KOG | RNA polymerase II assessory factor Cdc73p | JGI | ISS | |
| PTHR12466 | Panther | CDC73 DOMAIN PROTEIN | JGI | ISS | |
| PTHR12466:SF4 | Panther | gb def: Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone:F16J14 (Hypothetical p | JGI | ISS | |
| PF05179 | PFAM | RNA pol II accessory factor, Cdc73 family | JGI | ISS | |
| UniRef100_B7FK10 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Parafibromin n=1 Tax=Medicago truncatula RepID=B7FK10_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LFW0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LFW0_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma11g01020 not represented in the dataset |
Glyma11g01020 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g008100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g01020.1 sequence type=CDS gene model=Glyma11g01020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATCCTTTGTCGGCTCTCAGAGAGTTTACGATGAGAGGCGAGGTGGAAAAGATAGTGCGTGTGAACGCAGAGTTCCGATTCGGGGAGGAGTACACCTTCCCATGCTGGGTGGAGACTGCTTACCGTTCCACCAAGGGCAACCGTTACACCCTTGAAACCCTAGTCCACTACATACAAAACCACCACCTCAAGCACACCGAGTACATCCAGAACACCTTCGCCGTCGGCATCCCCTCCGTCACCCTCCCCGACCGCAAGCCCCTCCTCCAATACCTCCAGGGCACCCTCTCCTCCTCCGATTCCATCGAGTACCGCCCCCACGACGACCCTTCTTCCTTCCCAGCCCCCAAATCCACCCCCAACCCCCCTTCCCTGCCCCCTGAGGACCTCAATTTGGACTTCATCTCCATGATCAGGTCCGCCGAGAAGCCCTTGAAGGACCGCCAGTCCTTGCTGGAGTGCAAGAATCGCGACTTCTACAGCGTCCTCGTCTCCGCCACCAAGCGCGAAGAGGAGCGCCAGAGGATGGAATCTCACCAGAGGAAGGACGGCCTCGTTGCCAAGAGTCGCCTCATGGGCTCCGACGACCGGGGTTTAGGGTTCTCCGACGACATGGGCGGCTATGACCCTACTCCCAAGCCCAAGATGCACCTCAAGGGCACCAAAATTGGGGAAGGTGTCCCCATTATCTTGGTCCCCAGTGCCTTTCAGACCCTCATTACTATCTACAATGTCAAGGAGTTCTTGGAGGATGGTGTTTATATACCCACTGATGTTAAGGTCAAGCAGATGAAAGGTGCCAGGCCCGATTGTGTTACCGTCCAGAAGAAGCTCAGTAGGGATAGGGTTGTAACCGCTTATGAAGTCAGGGATAAGCCTTCTACTCTTAAACCCGACGATTGGGATCGGGTTGTTGCTGTTTTTGTGCTCGGCAAGGAGTGGCAGTTTAAGGATTGGCCTTTCAAGGACCATGTTGAAATTTTCAACAAAATTATTGGATTTTTCATGCGTTTTGAAGATGATAGTTTGGAGTCATGCAAGACTGTCAAGCAGTGGAATGTCAAGATTATCTCGATTAGTAAGAACAAGCGACATCAAGACAGGGCTGCAGCATTGGACGTCTGGGAGAGACTAGAAGACTTTGTACGCGCACGATCACATTCTTGA
>Glyma11g01020.1 sequence type=predicted peptide gene model=Glyma11g01020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDPLSALREFTMRGEVEKIVRVNAEFRFGEEYTFPCWVETAYRSTKGNRYTLETLVHYIQNHHLKHTEYIQNTFAVGIPSVTLPDRKPLLQYLQGTLSSSDSIEYRPHDDPSSFPAPKSTPNPPSLPPEDLNLDFISMIRSAEKPLKDRQSLLECKNRDFYSVLVSATKREEERQRMESHQRKDGLVAKSRLMGSDDRGLGFSDDMGGYDPTPKPKMHLKGTKIGEGVPIILVPSAFQTLITIYNVKEFLEDGVYIPTDVKVKQMKGARPDCVTVQKKLSRDRVVTAYEVRDKPSTLKPDDWDRVVAVFVLGKEWQFKDWPFKDHVEIFNKIIGFFMRFEDDSLESCKTVKQWNVKIISISKNKRHQDRAAALDVWERLEDFVRARSHS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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