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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G14790 | AT | Annotation by Michelle Graham. TAIR10: ATP-dependent RNA helicase, mitochondrial (SUV3) | chr4:8496351-8499829 REVERSE LENGTH=571 | SoyBase | E_val: 0 | ISS |
| GO:0009555 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen development | SoyBase | N/A | ISS |
| GO:0009561 | GO-bp | Annotation by Michelle Graham. GO Biological Process: megagametogenesis | SoyBase | N/A | ISS |
| GO:0016070 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA metabolic process | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0004004 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP-dependent RNA helicase activity | SoyBase | N/A | ISS |
| GO:0004386 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: helicase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016817 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on acid anhydrides | SoyBase | N/A | ISS |
| KOG0953 | KOG | Mitochondrial RNA helicase SUV3, DEAD-box superfamily | JGI | ISS | |
| PTHR12131 | Panther | ATP-DEPENDENT RNA AND DNA HELICASE | JGI | ISS | |
| PF00271 | PFAM | Helicase conserved C-terminal domain | JGI | ISS | |
| PF12513 | PFAM | Mitochondrial degradasome RNA helicase subunit C terminal | JGI | ISS | |
| UniRef100_G7K3R2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: ATP-dependent RNA helicase SUPV3L1 n=1 Tax=Medicago truncatula RepID=G7K3R2_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233D6CE | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233D6CE related cluster n=1 Tax=unknown RepID=UPI000233D6CE | SoyBase | E_val: 0 | ISS |
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Glyma11g00970 not represented in the dataset |
Glyma11g00970 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g44610 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g007500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g00970.1 sequence type=CDS gene model=Glyma11g00970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTCCTTTCTTCTTCGCCGTAACCGCAATCTATTCTCTCGCTCTCTACTCGGTAAAAAGGAGCCTTTTCGTCTGTACTTTCAGTTCAAGTCTCAAAGTTTAGGTGGTGCTGCAAACAAGGTGCATCCATATAGCAGCCGTAATGGTCCCATCAGAAATGATTTTACTGACTTGACTTGCCCTCATACATGGTATCCACAGGCTCGAAAGAAACATCGCAGGATTATCCTGCATGTTGGTCCAACAAATAGTGGTAAAACACATCATGCTCTGAAGCAACTTGAGTCAAGTGCTTCTGGTGTATATTGTGGTCCTTTAAGATTGTTGGCATGGGAGATAGCAAAACGGTTGAACAAGGCACAAGTTCCTTGTGATCTCATTACAGGTCAGGAAAGAGATGAAGTTGATGGTGCCAATCATAAGGCTGTCACAGTTGAAATGGTTGATGTTTCAGCTGATTATCAGTGTGCTGTTATTGATGAAATTCAGATGATAGGGTGTATTACAAGGGGATATTCATTTACACGTGCTTTATTAGGAATTGCTGCTGATGAACTTCACCTTTGTGGTGATCCAGCTGCTGTTCCCCTTATTCAGGAGATAATGAAAATTACTGGTGACGAAATTGAGGTTCAATTTTATGAGAGACTGTCACCTTTAGTCCCACTGAAGGTTCCTCTTGGATCTTTCTCTAATGTAAGAAATGGTGACTGCATTGTAACCTTTTCACGTCAGGAGATATACAAATTGAAGAAAAGAATTGAGAAAGAAGGAAAGCATCTTTGTTCAGTAGTTTATGGATCACTGCCACCAGAGACTCGAACAAGACAGGCAAGCATGTTCAATGATGCAAGTAGCGAGTTTGATGTTCTTGTGGCCAGTGATGCCATTGGAATGGGTCTTAATCTAAACATCTCTAGGATCATATTTTCAACCATGAAGAAGTTCGACGGTTTCGAGGTGCGAGATCTGACTGTACCTGAGATCAAACAGATTGCAGGGAGAGCTGGTAGATATGGGTCAAATTTTCCTGTAGGAGAAGTAACATGCATGGATGAAGAGGATCTACCCTTGCTCCATTCATCTTTGAATTCTCCATCACCCATTTTAGAGCGTGCTGGCATACTTCCTACCTTTGATCTGATGTATATGTATTCACGATTACATCCAAGAAATGGTTTCTATCAAATACTGGCGCATTTTCTTGACAATGCGAAATTATCTGAAAACTATTTCATTGTTAATTGTGAGCAATTATTGAAAGTGGCTGCTGTAATTGACGAGCTTCCCCTTGGATTACATGAGAAATACCTTTTCTGTATCAGCCCAGCTGACATGGATGATGAAATTTCATCTCAAGGCCTAGCACAGTTTGCAGAGAATTATGCAAAGAAAGGTCTTGTCCGGCTTCGAGAAATATTTACACCAGGGTCACTCAAAGTGCCCAAGACGCCAGCTGCTCTGAAGGAGTTGGAATCTATCCACAAGGTGTTGGATCTGTACGTTTGGTTGAGCTTTCGGTTGGAAGAATCTTTCCCAGACCATGAGCTGGCCGCATCCCAAAAGGCTATTTGCAGCATGTTGATTGAGGAATTCCTAGAAAGACTCGGGTGGCAAAAGCCAATGGCTAGAAGGTTGCCTTCTCATAAAATGTCAAGTTCTCTATTATCCCAACACATGAGGAAACACCTTTAA
>Glyma11g00970.1 sequence type=predicted peptide gene model=Glyma11g00970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASFLLRRNRNLFSRSLLGKKEPFRLYFQFKSQSLGGAANKVHPYSSRNGPIRNDFTDLTCPHTWYPQARKKHRRIILHVGPTNSGKTHHALKQLESSASGVYCGPLRLLAWEIAKRLNKAQVPCDLITGQERDEVDGANHKAVTVEMVDVSADYQCAVIDEIQMIGCITRGYSFTRALLGIAADELHLCGDPAAVPLIQEIMKITGDEIEVQFYERLSPLVPLKVPLGSFSNVRNGDCIVTFSRQEIYKLKKRIEKEGKHLCSVVYGSLPPETRTRQASMFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGFEVRDLTVPEIKQIAGRAGRYGSNFPVGEVTCMDEEDLPLLHSSLNSPSPILERAGILPTFDLMYMYSRLHPRNGFYQILAHFLDNAKLSENYFIVNCEQLLKVAAVIDELPLGLHEKYLFCISPADMDDEISSQGLAQFAENYAKKGLVRLREIFTPGSLKVPKTPAALKELESIHKVLDLYVWLSFRLEESFPDHELAASQKAICSMLIEEFLERLGWQKPMARRLPSHKMSSSLLSQHMRKHL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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