Glyma11g00940 - SoyBase

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Report for Sequence Feature Glyma11g00940

Feature Type:	gene_model
Chromosome:	Gm11
Start:	498743
stop:	502027
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g00940

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G22690	AT	Annotation by Michelle Graham. TAIR10: INVOLVED IN: photosystem II assembly, regulation of chlorophyll biosynthetic process, photosystem I assembly, thylakoid membrane organization, RNA modification; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopep	SoyBase	E_val: 0	ISS
GO:0009451	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA modification	SoyBase	N/A	ISS
GO:0010027	GO-bp	Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization	SoyBase	N/A	ISS
GO:0010207	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosystem II assembly	SoyBase	N/A	ISS
GO:0010380	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of chlorophyll biosynthetic process	SoyBase	N/A	ISS
GO:0048564	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosystem I assembly	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24015:SF182	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_G7K3Q3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7K3Q3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1LFV1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LFV1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g00940

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g00940

Paralog	Evidence	Comments
Glyma01g44640	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g00940 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g007200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g00940

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma11g00940

Limit To All Plant Sequences

>Glyma11g00940.1   sequence type=CDS   gene model=Glyma11g00940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTGCAGGGGACATGCATTCGCCAATTTACAATTGCATCACAGGCCAATACATGGCAACGACCCTTTTTCCATCTTCTACTCTTTTGGTTCCCGCAAGCTTAAAGGAAGCTAATCCCATAACCAGAAACTCATCCTCCAAGTTACTTGTAAACTGCAAAACACTGAAGGAGCTGAAGCAGTTGCATTGTGACATGATGAAGAAAGGGTTGTTGTGTCACAAGCCTGCTAGTAACCTCAACAAGCTTATTGCTTCTTCTGTTCAGATAGGTACCCTTGAGAGCTTGGACTATGCTCGAAATGCTTTTGGGGATGATGATGGAAACATGGCCTCCTTGTTCATGTATAACTGTCTTATTAGAGGTTATGCTTCAGCAGGGTTGGGTGACCAAGCAATCTTGCTTTACGTTCAGATGCTGGTGATGGGCATTGTGCCTGACAAGTACACTTTCCCTTTTTTGCTGAGTGCGTGTTCTAAGATTTTGGCGCTTTCTGAGGGTGTTCAAGTTCATGGGGCGGTTCTTAAGATGGGTTTGGAGGGAGATATATTTGTCAGCAACTCTTTGATACATTTCTATGCGGAGTGCGGGAAGGTTGACTTGGGACGAAAGCTGTTTGACGGAATGCTTGAGAGAAATGTTGTGTCTTGGACTAGTTTGATCAATGGTTATTCTGGGAGGGACTTGTCAAAGGAGGCGGTTTCTCTGTTCTTTCAGATGGGTGAGGCTGGTGTAGAACCTAATCCGGTTACCATGGTCTGCGTTATATCTGCTTGTGCCAAGTTGAAGGATCTTGAATTGGGTAAGAAAGTGTGTTCTTATATCAGTGAGTTAGGCATGGAACTTAGCACAATCATGGTGAATGCATTGGTTGATATGTACATGAAATGTGGGGATATATGTGCTGCGAGGCAGATTTTTGATGAATGTGCCAATAAGAATTTGGTTATGTACAATACTATCATGTCAAATTATGTGCACCATGAGTGGGCCAGTGACGTGTTAGTAATTTTGGATGAAATGCTGCAAAAGGGACCACGACCGGATAAGGTGACCATGTTATCTACGATTGCAGCCTGTGCACAGTTAGGTGATCTTTCTGTTGGGAAGTCATCCCATGCTTATGTCTTACGGAATGGACTTGAAGGTTGGGATAACATTTCCAACGCCATCATTGACATGTACATGAAATGTGGCAAAAGAGAAGCAGCTTGCAAAGTTTTTGAGCATATGCCAAACAAGACGGTGGTGACTTGGAATTCGTTAATTGCAGGTTTGGTTAGAGATGGTGACATGGAATTAGCTTGGAGAATCTTTGATGAGATGCTTGAGAGGGATCTTGTATCTTGGAACACTATGATCGGTGCATTGGTTCAAGTGAGCATGTTTGAGGAAGCAATTGAGCTATTCAGAGAGATGCAAAACCAGGGGATTCCAGGAGATAGAGTGACAATGGTGGGCATTGCTTCTGCCTGTGGATATTTAGGAGCTCTTGATCTTGCCAAGTGGGTATGTACTTACATTGAGAAAAATGACATTCACGTGGACTTGCAGCTTGGCACAGCTTTGGTTGACATGTTTTCAAGATGTGGTGATCCCTCAAGTGCTATGCATGTTTTCAAAAGAATGGAAAAACGGGATGTGTCTGCCTGGACTGCTGCCATCGGAGTTATGGCAATGGAGGGAAATACAGAAGGGGCTATTGAGCTTTTTAACGAGATGCTTGAACAAAAGGTGAAACCAGATGATGTTGTTTTTGTGGCACTATTGACAGCATGTAGCCATGGTGGCTCTGTGGACCAAGGGAGGCAACTTTTTTGGTCAATGGAAAAAGCCCACGGAATACGTCCTCATATTGTCCACTATGGATGTATGGTTGATTTGCTTGGTCGAGCTGGGCTGCTGGAAGAAGCTGTTGATCTCATACAAAGTATGCCAATAGAACCTAATGATGTTGTGTGGGGATCTCTACTAGCAGCTTGTCGGAAACACAAAAATGTTGAACTGGCACATTATGCAGCTGAAAAGTTAACACAATTGGCCCCTGAAAGAGTTGGGATTCATGTGCTGTTATCTAACATATATGCATCAGCTGGAAAATGGACTGATGTAGCAAGAGTGAGGTTGCAAATGAAGGAGAAAGGGGTCCAGAAAGTGCCTGGATCAAGCTCAATAGAAGTTCAAGGATTGATTCACGAGTTCACCTCAGGTGATGAATCACACGCAGAGAACACCCATATTGGATTAATGCTAGAGGAAATAAACTGCAGGCTAAGTGAGGCAGGGTATGTTCCTGATACAACCAATGTCTTACTTGATGTTGATGAGCAGGAGAAAGAGCATTTGCTCAGCAGACATAGTGAGAAACTAGCCATGGCTTATGGATTAATCACTACTGGTCAAGGTATACCCATACGGGTAGTAAAAAATCTTCGAATGTGTTCTGATTGCCATTCATTTGCAAAATTAGTGTCAAAACTATACAATAGGGAAATTACAGTTAGAGACAATAACAGGTATCATTTTTTCAAGGAAGGATTCTGTTCTTGTAGAGATTATTGGTAA

Predicted protein sequences of Glyma11g00940

Limit To All Plant Sequences

>Glyma11g00940.1   sequence type=predicted peptide   gene model=Glyma11g00940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFAGDMHSPIYNCITGQYMATTLFPSSTLLVPASLKEANPITRNSSSKLLVNCKTLKELKQLHCDMMKKGLLCHKPASNLNKLIASSVQIGTLESLDYARNAFGDDDGNMASLFMYNCLIRGYASAGLGDQAILLYVQMLVMGIVPDKYTFPFLLSACSKILALSEGVQVHGAVLKMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYSGRDLSKEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVCSYISELGMELSTIMVNALVDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVGKSSHAYVLRNGLEGWDNISNAIIDMYMKCGKREAACKVFEHMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNTMIGALVQVSMFEEAIELFREMQNQGIPGDRVTMVGIASACGYLGALDLAKWVCTYIEKNDIHVDLQLGTALVDMFSRCGDPSSAMHVFKRMEKRDVSAWTAAIGVMAMEGNTEGAIELFNEMLEQKVKPDDVVFVALLTACSHGGSVDQGRQLFWSMEKAHGIRPHIVHYGCMVDLLGRAGLLEEAVDLIQSMPIEPNDVVWGSLLAACRKHKNVELAHYAAEKLTQLAPERVGIHVLLSNIYASAGKWTDVARVRLQMKEKGVQKVPGSSSIEVQGLIHEFTSGDESHAENTHIGLMLEEINCRLSEAGYVPDTTNVLLDVDEQEKEHLLSRHSEKLAMAYGLITTGQGIPIRVVKNLRMCSDCHSFAKLVSKLYNREITVRDNNRYHFFKEGFCSCRDYW*

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