SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G22790 | AT | Annotation by Michelle Graham. TAIR10: Kinase interacting (KIP1-like) family protein | chr3:8052446-8057888 REVERSE LENGTH=1728 | SoyBase | E_val: 0 | ISS |
| GO:0000226 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization | SoyBase | N/A | ISS |
| GO:0000911 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009855 | GO-bp | Annotation by Michelle Graham. GO Biological Process: determination of bilateral symmetry | SoyBase | N/A | ISS |
| GO:0009965 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis | SoyBase | N/A | ISS |
| GO:0010014 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem initiation | SoyBase | N/A | ISS |
| GO:0010073 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem maintenance | SoyBase | N/A | ISS |
| GO:0010089 | GO-bp | Annotation by Michelle Graham. GO Biological Process: xylem development | SoyBase | N/A | ISS |
| GO:0042127 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cell proliferation | SoyBase | N/A | ISS |
| GO:0044036 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall macromolecule metabolic process | SoyBase | N/A | ISS |
| GO:0051322 | GO-bp | Annotation by Michelle Graham. GO Biological Process: anaphase | SoyBase | N/A | ISS |
| GO:0005884 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: actin filament | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0051015 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: actin filament binding | SoyBase | N/A | ISS |
| KOG0962 | KOG | DNA repair protein RAD50, ABC-type ATPase/SMC superfamily | JGI | ISS | |
| PTHR13140 | Panther | MYOSIN | JGI | ISS | |
| PTHR13140:SF97 | Panther | MYOSIN K | JGI | ISS | |
| PF07765 | PFAM | KIP1-like protein | JGI | ISS | |
| UniRef100_G7K3P8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: N-acetyltransferase, putative n=1 Tax=Medicago truncatula RepID=G7K3P8_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LFU8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LFU8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma11g00910 not represented in the dataset |
Glyma11g00910 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g44680 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g006800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g00910.1 sequence type=CDS gene model=Glyma11g00910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAACTTTGTCTCATTCCGAGTCCCGGCGCTCGTATTCTTGGTGGTGGGATAGCCACCTACCAAAGAATTCAAAATGGCTTCAGGAAAACCTTGCAGACATAGATACCAAAGTCAAAGCAATGATAAAGCTCATTGATGAGGAAGCAGATTCATTTGCAAGGAGGGCAGAAATGTACTATAAGAAGCGTCCGGAGCTCATGAAATTAGTGGAGGAGTTCTACCGAGCATACCGTGCTTTAGCTGAGAGATACGATCATGCAATGGGAGAGCTACGCCATGCCCACAAAACAATTGCAGAAGAACATTACATGCTGACCGATGATTCGTCGCCGTGTGTTGAATCACACACACCAGGAGTGCCTTGTCCGAATTATTGCGAGTCTGAGCATGCGGAGAAAGCAGATAGTGAAGTTCAAACCTTGAGGAAAGGCCTGGCCAAAATACAGTCTGACAAGGATGCTATCTTTCTTCAGTATCAGAAGAGTATGGACAAGTTATCCGAAATGGAAAGAGATCTCAATAAGGCACAAAAAGATGCTGGAGGCCTTGATGAAAGAGCGAGTAAAGCTGAAATTGAAACTAGAGTGTTGAAGGAAGCGCTGGCACAGCTAAAATCTGAGAAGGAAGCTGGTCAAGTTCAGTACAATCAGTGCCTAGAAAGTATTGCTAAACTGGAGACTATGTTATCTCTTGCCCAGCTGGATGCCAAGGAATTTGATGAGAAAACTTCTAAGGCTGAACTTGAAGCCAAAATTCTAAGGCAAGAACTAGGCCAGTTGGAAGCTCAGAAAGATGCTGGTTTTCTTAGATACAAGCAGTGTGTTGAAAATATTTCAGTTTTGGAGGCCAAGATAACCCTTGCTGAGGAGAATTCCAGGATGTTAAGTGAGCAACTTGAAAAAGCTGAACTGGAAGTTAAAGCACTGAGAAAAAATCTTGCTGAACTGAATGGAGAGAAAGAATCTTTAGCTGTCCTTTACCATCAATGCTTGGAGAAGATATCTAAAATGGAGAATGAAATTTTGCTTGCACAAGAAAATTCTGAAAAACTAAATAGAGAAATTGAGAAAGGGGCTGAAAAACTTAAGACTGCTGAAGAACATTGTGATATGTTGGAGAAATCAAATCAATCTCTTCGGCTAGAGGCTGAAAATCTGCTGCAGAGGATAGCTATGAAGGATCAAGCACTTTTAGAGAAGCATGCTGAGATAGAGAGGCTCCAGACTCTAATGCAGGAGGAGCATTCTCACTTTCTTGAAATTGAATCCACTCTACAGACTCTGCAGATGTTGTACTCTAAGTCACAACAGGAGCAAGGAAGTCTTGTAATGGAGCTTAAATATGGGCTTCAGTTGTTGAAGGATTTGGAGCTTCCGAAACAGGGTGTTTTTAAGGAAGAAATGCAAGAGAATGTGGAAGAAAACAGGACCCTGAATGAAATTACTTTCTCTTCCACTAGGTCACTGTTAAGAAGACAGCAAACGGAAATCTCTAAATTAAAGGAGATCAAAGAGAAACTGGAACGGGAGTTTGTTGTAAACTCTGAAGAAAGCAATGCCCTCCAGCAGGAAGCTCATCAAATAAAGAATGATATCCAGCACTTGAATAATAGATATCACGCTATGCTGGGACAACTACAGACTTTAGGCTTGGATCCTAAATGTTTTGCAGCATCTGTGAAAGATTTGCAAAATGAGAACTCAAATCTAAAGGAGGTCTGCAAGATGGAACGTAATGCGAAAGAAGCTCTTCGTGAAAAGTCAAAGGACATGGATGAACTTTTGATAGAGAATGAATTTATGGAATTTTCTCTCTCAAGATTAAATGATGAATTGGATGGATTAAGAGCAACAGTGAGGAAATTTCAAGAGTCCTGCCAAGTTCTCCAGGAAGAAAAATCTATGGCCGTTGATGAGAAATCAGCTCTATTTTCACAGTTACAAATAGTCACTGAAAGTATGCAGAAGCTATTGGAGAAGAATGCCTTGTTGGAGAAGTCCCTCTCTGATTCGAAGATTGAGCTGGAAGATTTGAAGGCTAAATCAACTGACTTGGAAGAATTCTGCAAGTTGCTAAATGATGAGAAGTACAATCTCCTAAGCGAAAGAAGCATCCTGGTATCTCAGTTGGAAAGTGTTGAGGCTAAACTAAGTAACCTGGAAAAGATGTTTACAAAATTAGAAGAAAAATATGCTGACTCGGAGAAGGACAAAGAAAGCACTGGCAACCAAGTAGAAGAGATCCGTGCTTCAATTTTGGTGCAAAAGCAAAAGCATGCAAATCATAAACACTTGAGCGAAGTCCGACTGACAAATTTGGAGAATCTTTTCCATGCACTACAGGAAGAACTGCGGTTGGGGAAGATTGAATTTGAAAAAGAAGTTGACAAAGCTGTAAATGCTCAGATGGAGATGTTCATTTTGCAAAGTTGTATAGAAGATCTGGAGCAGAAGAACTTGGCTTTGTTAACTGAATGTGAAAAGCATGTTGAGGCATCAAAATTTTCTTACAAAGTTATTTCTGAGTTGGAGACTGAAAACTTTATGCAACTGATGGAAGAAGAGTTTTTGTTACATGAAATTAGAAAGCTTAAAATGGCTATTCATCAAGTGTGTGGGGCTCTTCAGATTGATCCATATGGTGTGCACGACAAAGGAATCAAGCAAGAGGAAATGCCTATATTGCATATTTTGGACAACATTGAGGACTTGAAAAGTTCTTATGTGAAAAGCCAAGAAGAGAAGCAGCAGCTCCTTGTAGAGAATTCTGTCCTCCTAACTTCACTTGAGCAAAATCGATCTGAGAGAGAAAAAATGGAGTCAGAGAAAAAGATCATGGAGCAAGACTTCGAGAAAACGAGACAGAAGAATTCAATGTTGCAGAAAGCGAAGGTTGATCTTCTAGAGAAGAACAGGCAACTGAGGACTGAAGTGGCCAAAGGAGAAGAAAGAGACAATGCATCAAAGTCCAAATTGGCAGCCCTGCATGCAGAGTTGATAGATTTGCAGACAAAAAATCAAGTGTTTCAGGAAGAAAATAATATGATGCTTGAGGAGAAAAATTCACTGCTTAGGAGTGTTTTGGACCTCAAAGATGCAATGTCCGTGGCTGAAGATGAAAACAGTGTAATACTTCATAAGGTACTAGCTCTAAGCAACCTCAACTTGGTTTATGAGAGCTTTCTCACCCAGAAAGTCATCGAACAAGAAGCACTTTCTGAACATCTCAGCAGCAATCTTAGCCGTTTAAACGGTGACCTCAATCAGGAACTTGGTGTGTTAAGGAAGAAGTTTGAGGTGAAAGAAGAAGAGAATGTTTATCTGAATGAGGCTACTAAGAGGATGGATAAAGAGCTGCAGGAAATAAAAAATGCAAATTGCCGTTTAAGTCATCAAGTTGAAAATTCAGAGAATCTTCTCAAGAAGAAAGATATAGAGCTTCTAGAAACGGAGACTAGGCTGAAGGCTGCAGAGAAATTGAATGGGGAGTTTTGTAGATATATTGAGGAGATGAAGATGGATAAAAAAGAATCAAGATTGACCAGAGAAAACCTAGACAGGCAGATTCTTGAACTATCAGAAAATGGCATGAATCAGAAAAGAGAAATTGAACACCTTAATGAAGAAAATAGAAGCTTTCAGTCCGTGATGAGATCATTACTTCATGAAGTTGAGCAACACAAGGCTAGAGAACAAGCACTGAATACAGAGTTGCAGGACAAAACAAATGAATGCCAACATTGTGAGGCTGAGGCAGCTTCGTTCTATTTGGAGCTTCAGATTTCATCCATTAGTGAAGAACTGCTGAAAGGCAAGGTCACTGAGCTTACTGGAGTTTGCAAGAGACTTGATGATGAAAGTGCAGGGAAAGGCTTGGTGATTGAACAAATGATAGAAAGAATCGGTTTACTGGAAAAGGAAATTAGAGGACTGAAGGGGCAGCTATCTGCATACACTCCAACAATTACTTCTTTGAAAGAGGATTTTGCATCTCTAGAGCACACTTACTTTCTTTTGACCAATAAAACTTTTGCCGTAGGCAACATAGAACAGAAGGATGTAGTGACTGAGATTTGTCTCCAAGAAGCAAATAGCTATCGAAGTTTAAAAGGAAATGAAAGCACCTTAACACCAGATGGGGTTACAGATTTGCTGAGCATGCAGACAAGGATTAGAGCAGTTGAAAAGTTAATGATGGAAGAACTTGAAAGACATGTGGAGGAGGAAAGTTTGACCACAAATGTCAAAGCAGAAGCTGTTACAGAAATGACTGAGCATTCAAATTTGGAAGTTGGCACGTATCCAGAAATTGACGACAGAAAAGTGGTGATGAAAATTAAGAAAGACAACAGCAAACGTGGCAATAATGCATGGAGAACAAAATCTCAGAAAAGGTTGATAATGATAGACATTCCTCTTGATGACTACAAGGATGATCCAGACTCCAACAAGTATTGCAAGAGAGATCACACTAGGTGCAATGATCATATGCTTGAGCTATGTGAAACTGATCAGCATGATGTTACAGAAGAAAGTAAACATAATTCTGTTTCAATAGAGGATGTAATTACATGCCATGAGTCAGAAAGATGTCAAAATTACTCTTCAGAATTGGAGACAGAGAAGGAATTAGGGGTTGACAAGCTAGAGTTGTGGAAGACTCGAAAAGAGACGACAAGTGAAGATAGCAAGAGGAAAATTTTGGAGAGGCTTGCCTCCGATTCTCAGAAGCTTGCCATTCTTAAAATGACACTACAAGACTTGAAGAAGAAACCAGAGACACAGAAGAAAAGCAGCAAGGTAAATGAGATTGAGTATGAAACAGTGAAAAGGCATATAGAAGATGTTGAGGAAGCTGTCATGCAACAAATAGGCATATATGATCAACTGGCAAAGGATATTGAAGAGTGCACATCCTCATCTTCAGACACAAACACAATGCAGATGGAAAAGCAAGGAGGACACGGGCAAAGAAAAAAGCTAACAGAACAGGCTCGAAGAGGTTCTGAACAGATAGGAAGGTTGCAGTTTGAGGTGCAGAACATCCAGTATATTCTGCTCAAATTGGCTGATGTGAAGAACAACAAATGCAAAAACAAAAACACTAGACCAACAGGTGTGTTGCTGAAGGACTTTATTCGCATTGGAAGGAAAAATAACAGAAGGCGCCGTAAGGGATGTGCTTGTGGATGTTCAAGGCCTTCAACTAATGAGGACTAA
>Glyma11g00910.1 sequence type=predicted peptide gene model=Glyma11g00910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MATLSHSESRRSYSWWWDSHLPKNSKWLQENLADIDTKVKAMIKLIDEEADSFARRAEMYYKKRPELMKLVEEFYRAYRALAERYDHAMGELRHAHKTIAEEHYMLTDDSSPCVESHTPGVPCPNYCESEHAEKADSEVQTLRKGLAKIQSDKDAIFLQYQKSMDKLSEMERDLNKAQKDAGGLDERASKAEIETRVLKEALAQLKSEKEAGQVQYNQCLESIAKLETMLSLAQLDAKEFDEKTSKAELEAKILRQELGQLEAQKDAGFLRYKQCVENISVLEAKITLAEENSRMLSEQLEKAELEVKALRKNLAELNGEKESLAVLYHQCLEKISKMENEILLAQENSEKLNREIEKGAEKLKTAEEHCDMLEKSNQSLRLEAENLLQRIAMKDQALLEKHAEIERLQTLMQEEHSHFLEIESTLQTLQMLYSKSQQEQGSLVMELKYGLQLLKDLELPKQGVFKEEMQENVEENRTLNEITFSSTRSLLRRQQTEISKLKEIKEKLEREFVVNSEESNALQQEAHQIKNDIQHLNNRYHAMLGQLQTLGLDPKCFAASVKDLQNENSNLKEVCKMERNAKEALREKSKDMDELLIENEFMEFSLSRLNDELDGLRATVRKFQESCQVLQEEKSMAVDEKSALFSQLQIVTESMQKLLEKNALLEKSLSDSKIELEDLKAKSTDLEEFCKLLNDEKYNLLSERSILVSQLESVEAKLSNLEKMFTKLEEKYADSEKDKESTGNQVEEIRASILVQKQKHANHKHLSEVRLTNLENLFHALQEELRLGKIEFEKEVDKAVNAQMEMFILQSCIEDLEQKNLALLTECEKHVEASKFSYKVISELETENFMQLMEEEFLLHEIRKLKMAIHQVCGALQIDPYGVHDKGIKQEEMPILHILDNIEDLKSSYVKSQEEKQQLLVENSVLLTSLEQNRSEREKMESEKKIMEQDFEKTRQKNSMLQKAKVDLLEKNRQLRTEVAKGEERDNASKSKLAALHAELIDLQTKNQVFQEENNMMLEEKNSLLRSVLDLKDAMSVAEDENSVILHKVLALSNLNLVYESFLTQKVIEQEALSEHLSSNLSRLNGDLNQELGVLRKKFEVKEEENVYLNEATKRMDKELQEIKNANCRLSHQVENSENLLKKKDIELLETETRLKAAEKLNGEFCRYIEEMKMDKKESRLTRENLDRQILELSENGMNQKREIEHLNEENRSFQSVMRSLLHEVEQHKAREQALNTELQDKTNECQHCEAEAASFYLELQISSISEELLKGKVTELTGVCKRLDDESAGKGLVIEQMIERIGLLEKEIRGLKGQLSAYTPTITSLKEDFASLEHTYFLLTNKTFAVGNIEQKDVVTEICLQEANSYRSLKGNESTLTPDGVTDLLSMQTRIRAVEKLMMEELERHVEEESLTTNVKAEAVTEMTEHSNLEVGTYPEIDDRKVVMKIKKDNSKRGNNAWRTKSQKRLIMIDIPLDDYKDDPDSNKYCKRDHTRCNDHMLELCETDQHDVTEESKHNSVSIEDVITCHESERCQNYSSELETEKELGVDKLELWKTRKETTSEDSKRKILERLASDSQKLAILKMTLQDLKKKPETQKKSSKVNEIEYETVKRHIEDVEEAVMQQIGIYDQLAKDIEECTSSSSDTNTMQMEKQGGHGQRKKLTEQARRGSEQIGRLQFEVQNIQYILLKLADVKNNKCKNKNTRPTGVLLKDFIRIGRKNNRRRRKGCACGCSRPSTNED*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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