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Report for Sequence Feature Glyma11g00631

Feature Type:gene_model
Chromosome:Gm11
Start:290732
stop:295713
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma11g00631
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G19280AT Annotation by Michelle Graham. TAIR10: kinase associated protein phosphatase | chr5:6488450-6493182 FORWARD LENGTH=581 SoyBaseE_val: 0ISS
GO:0006396GO-bp Annotation by Michelle Graham. GO Biological Process: RNA processing SoyBaseN/AISS
GO:0006470GO-bp Annotation by Michelle Graham. GO Biological Process: protein dephosphorylation SoyBaseN/AISS
GO:0007165GO-bp Annotation by Michelle Graham. GO Biological Process: signal transduction SoyBaseN/AISS
GO:0009934GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of meristem structural organization SoyBaseN/AISS
GO:0016310GO-bp Annotation by Michelle Graham. GO Biological Process: phosphorylation SoyBaseN/AISS
GO:0022402GO-bp Annotation by Michelle Graham. GO Biological Process: cell cycle process SoyBaseN/AISS
GO:0042742GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to bacterium SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0008287GO-cc Annotation by Michelle Graham. GO Cellular Compartment: protein serine/threonine phosphatase complex SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0004721GO-mf Annotation by Michelle Graham. GO Molecular Function: phosphoprotein phosphatase activity SoyBaseN/AISS
GO:0004722GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine phosphatase activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0019901GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase binding SoyBaseN/AISS
KOG0698 KOG Serine/threonine protein phosphatase JGI ISS
PTHR13832Panther PROTEIN PHOSPHATASE 2C JGI ISS
PTHR13832:SF10Panther PP2C PROTEIN PHOSPHATASE RELATED JGI ISS
PF00481PFAM Protein phosphatase 2C JGI ISS
PF00498PFAM FHA domain JGI ISS
UniRef100_B4Y5J6UniRef Annotation by Michelle Graham. Best UniRef hit: Kinase-associated protein phosphatase 1 n=1 Tax=Glycine max RepID=B4Y5J6_SOYBN SoyBaseE_val: 0ISS
UniRef100_B4Y5J6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Kinase-associated protein phosphatase 1 n=1 Tax=Glycine max RepID=B4Y5J6_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma11g00631
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g00631 not represented in the dataset
Glyma11g00631 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g00631
ParalogEvidenceComments
Glyma01g45030 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g00631 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g004000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma11g00631
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma11g00631
>Glyma11g00631.1   sequence type=CDS   gene model=Glyma11g00631   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTCCGATGCTACAAACCATTCTCACTGTGCTTCTTCTCCTTATGCTTCTTCTCATCGTCATCTTCCTCTTCTTTCTCTTCAAACCATGGCGCTTCTTTTTCTCTCCGCGTTTCCTCTCCTCCATCAAGGGCGAGCTAGAGCGGCCCCTTTTTGTGGGGGACGAAGGTGATGCGTCGTCGTTTAATCAGTGCAATGAATTGCCTCGAGATTATGATCTCGAGGGTGCGTGTTATCCCAGTGAAGTTCATTTTCGCTCTCCTCGAACCCATGGCCAAGGCCTTGTTCATAAGCAAAGGCTTCAAACCCTTAACATGCCACAGCCACATGCTGGTGATACTTTGGTTGTCGATGTCATCTCTGATCATTCCTCTGAGGATCTTGATGTTGGTCAAACGCTTAAGCTTCCTTCATCTCATTTAGCTCAAATTCAAAAGCATGCCCCGCCCAATTTTCAAAATGATAGACTTGAGGACTTTGTGCAAAGGGATATCTCTGATCAAAGAAGTTGCCTCACTCTGGAGGTTATCAGTGGCCCTTCTCGGGGACTTCGTTATTCTGTTGAGTCCACCAACCCCTCTCGTCTCCCGCTAACCTTGGGAAGGGTTTCTCCGAGTGATTTGTTGATGAAGGATTCGGAAGTGTCAGGAAAGCATGCCATGATAAACTGGAATTTGGATAAAATGAAATGGGAGTTGGTGGATATGGGTAGCCTCAATGGAACACTGTTGAATTCTAAGCCAATCAACCATCAAGACACTGGAAGTAGGAATTGGGGGAATCCGATGAATCTTACTAATGGAGATATCATAACACTTGGAACAACATCAAAAGTAATGGTTCATATTACCTCACAAACTCAGCATCACATTCCCTTTGGAGTTGGTATGGCATCAGATCCGATGGCTATGCGTCGAGGAGGAAAAAAGTTTACTATGGAAGACGTTTGCTATTATCAATGGCCTCTACCTGGGCTGGATCAGTTTGGAATTTTTGGCATTTGTGATGGGCATGGTGGAGATGGGGCTGCCAAATCTGCTAGCAAACTTTTTCCTGAGGTAATTGCTAGTATATTATCGGATTCATTAAAAAGGGAGAGGGTTTTATCACTCTGTGATGCTTCAGATGTTCTTCGAGAAGCATTTTCTCAAACAGAAGCACACATGAATAACTATTATGAGGGATGTACAGCAACAGTGCTTCTGGTGTGGACTGATGGTGATGAAAATTTCTTTGCACAATGTGCTAATGTTGGAGACTCCACCTGTATTATGAGTGTGAATGGGAAACAAATCAAGATGTCAGAAGATCACAAGTTAACGAATTATTCTGAAAGACTCAGAATCGAAGAGACAGGTGAACCACTAAAAGATGAGGAAACACGTCTATATGGTATAAATCTGGCAAGAATGCTTGGGGACAAATTCCTGAAACAGCAGGATTCCCGGTTCAGTTCAGAACCTTACATTAGTCAAGTTGTGCATATTGATCAAGCGAGCAACGCTTTTGCTATTCTAGCTAGTGATGGGTTATGGGATGTCATCAGCGTGAAGAAGGCAATTCAGCTTGTGTTGCAGATGAGGGAGAGATGCTATTCAGAGAATACAGCAGAAAAGACTGCTAGTTTGTTGTTGAATGAGGCTAAAACACTCAGAACAAAGGATAATACCTCTGTAATTTTCTTAGATTTTGATACCTTAAACAGATTCTCTTGTAAAGTTGAATCCTAG
Predicted protein sequences of Glyma11g00631
>Glyma11g00631.1   sequence type=predicted peptide   gene model=Glyma11g00631   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGPMLQTILTVLLLLMLLLIVIFLFFLFKPWRFFFSPRFLSSIKGELERPLFVGDEGDASSFNQCNELPRDYDLEGACYPSEVHFRSPRTHGQGLVHKQRLQTLNMPQPHAGDTLVVDVISDHSSEDLDVGQTLKLPSSHLAQIQKHAPPNFQNDRLEDFVQRDISDQRSCLTLEVISGPSRGLRYSVESTNPSRLPLTLGRVSPSDLLMKDSEVSGKHAMINWNLDKMKWELVDMGSLNGTLLNSKPINHQDTGSRNWGNPMNLTNGDIITLGTTSKVMVHITSQTQHHIPFGVGMASDPMAMRRGGKKFTMEDVCYYQWPLPGLDQFGIFGICDGHGGDGAAKSASKLFPEVIASILSDSLKRERVLSLCDASDVLREAFSQTEAHMNNYYEGCTATVLLVWTDGDENFFAQCANVGDSTCIMSVNGKQIKMSEDHKLTNYSERLRIEETGEPLKDEETRLYGINLARMLGDKFLKQQDSRFSSEPYISQVVHIDQASNAFAILASDGLWDVISVKKAIQLVLQMRERCYSENTAEKTASLLLNEAKTLRTKDNTSVIFLDFDTLNRFSCKVES*






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