Glyma11g00600 - SoyBase

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Report for Sequence Feature Glyma11g00600

Feature Type:	gene_model
Chromosome:	Gm11
Start:	265093
stop:	267332
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g00600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G59850	AT	Annotation by Michelle Graham. TAIR10: Ribosomal protein S8 family protein \| chr5:24112499-24113084 REVERSE LENGTH=130	SoyBase	E_val: 3.00E-91	ISS
GO:0001510	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA methylation	SoyBase	N/A	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0009664	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall organization	SoyBase	N/A	ISS
GO:0042545	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall modification	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005840	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ribosome	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0022627	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic small ribosomal subunit	SoyBase	N/A	ISS
GO:0003735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome	SoyBase	N/A	ISS
KOG1754	KOG	40S ribosomal protein S15/S22	JGI		ISS
PTHR11758	Panther	30S RIBOSOMAL PROTEIN S8	JGI		ISS
PF00410	PFAM	Ribosomal protein S8	JGI		ISS
UniRef100_C6F117	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative ribosomal protein S15 n=1 Tax=Glycine max RepID=C6F117_SOYBN	SoyBase	E_val: 1.00E-89	ISS
UniRef100_I3NML3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 40S ribosomal protein S15C n=3 Tax=Euphorbiaceae RepID=I3NML3_HEVBR	SoyBase	E_val: 2.00E-89	ISS

Expression Patterns of Glyma11g00600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g00600 not represented in the dataset	Glyma11g00600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma11g00600 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g003700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g00600

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma11g00600

Limit To All Plant Sequences

>Glyma11g00600.4   sequence type=transcript   gene model=Glyma11g00600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTGTAACCCAGAGCTCCTTCGCCTCATCGATAGTTTCAAGTCTCGTTTTGACAATGGTGAGGGTTAGTGTGTTGAATGATGCTCTGAAGAGCATGTACAACGCCGAGAAGCGCGGGAAGCGCCAGGTCATGATTAGGCCATCCTCCAAGGTCATCATAAAATTCCTATTGGTCATGCAGAAGCACGGGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCGTGGTTGAATTGAATGGGCGGCTGAATAAGTGTGGGGTTATTAGCCCTCGCTTTGATGTTGGTGTCAAAGAGATTGAAGGTTGGACTGCAAGACTACTACCCTCAAGACAGTTTGGGTATATTGTCTTGACAACCTCTGCTGGTATCATGGATCATGAAGAGGCTAGGAGAAAGAATGTTGGTGGTAAAGTGTTGGGTTTCTTCTACTAGGCTTGCTTTTTGTTTGAGTTTTCTCATAACAAATCGGGTCGGCCAATTTTGTTTAACGGGTATGGACTTAAAATTTGCTGGGCATTAGCGATGTCCGATGCTTGGTGTTTGCCGCATCAGCGGACGGATATTGCATCATGTGCCTGTTTTAAAATTAATTTTGGCCACTGCAAATTGTATTTGGTAAATGTGGTTTCCAAAATTAATTAAGGTGGGTGTATTTGATTTGAGAATGGTGGAAGCCTTTCATTTTTCAATTGCATAGAATTAATTCCTT

Coding sequences of Glyma11g00600

Limit To All Plant Sequences

>Glyma11g00600.3   sequence type=CDS   gene model=Glyma11g00600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGAGGGTTAGTGTGTTGAATGATGCTCTGAAGAGCATGTACAACGCCGAGAAGCGCGGGAAGCGCCAGGTCATGATTAGGCCATCCTCCAAGGTCATCATAAAATTCCTATTGGTCATGCAGAAGCACGGGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCGTGGTTGAATTGAATGGGCGGCTGAATAAGTGTGGGGTTATTAGCCCTCGCTTTGATGTTGGTGTCAAAGAGATTGAAGGTTGGACTGCAAGACTACTACCCTCAAGACAGTTTGGGTATATTGTCTTGACAACCTCTGCTGGTATCATGGATCATGAAGAGGCTAGGAGAAAGAATGTTGGTGGTAAAGTGTTGGGTTTCTTCTACTAG

>Glyma11g00600.4   sequence type=CDS   gene model=Glyma11g00600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGAGGGTTAGTGTGTTGAATGATGCTCTGAAGAGCATGTACAACGCCGAGAAGCGCGGGAAGCGCCAGGTCATGATTAGGCCATCCTCCAAGGTCATCATAAAATTCCTATTGGTCATGCAGAAGCACGGGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCGTGGTTGAATTGAATGGGCGGCTGAATAAGTGTGGGGTTATTAGCCCTCGCTTTGATGTTGGTGTCAAAGAGATTGAAGGTTGGACTGCAAGACTACTACCCTCAAGACAGTTTGGGTATATTGTCTTGACAACCTCTGCTGGTATCATGGATCATGAAGAGGCTAGGAGAAAGAATGTTGGTGGTAAAGTGTTGGGTTTCTTCTACTAG

Predicted protein sequences of Glyma11g00600

Limit To All Plant Sequences

>Glyma11g00600.3   sequence type=predicted peptide   gene model=Glyma11g00600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY*

>Glyma11g00600.4   sequence type=predicted peptide   gene model=Glyma11g00600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY*

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