|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT5G28237 | AT | Annotation by Michelle Graham. TAIR10: Pyridoxal-5'-phosphate-dependent enzyme family protein | chr5:10207477-10213542 REVERSE LENGTH=465 | SoyBase | E_val: 0 | ISS |
GO:0000162 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tryptophan biosynthetic process | SoyBase | N/A | ISS |
GO:0006568 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tryptophan metabolic process | SoyBase | N/A | ISS |
GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
GO:0004834 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: tryptophan synthase activity | SoyBase | N/A | ISS |
GO:0030170 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: pyridoxal phosphate binding | SoyBase | N/A | ISS |
KOG1395 | KOG | Tryptophan synthase beta chain | JGI | ISS | |
PTHR10314 | Panther | PYRIDOXAL-5-PHOSPHATE DEPENDENT BETA FAMILY | JGI | ISS | |
PTHR10314:SF3 | Panther | CYSTEINE SYNTHASE-RELATED | JGI | ISS | |
PF00291 | PFAM | Pyridoxal-phosphate dependent enzyme | JGI | ISS | |
UniRef100_G7K113 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Tryptophan synthase beta chain n=1 Tax=Medicago truncatula RepID=G7K113_MEDTR | SoyBase | E_val: 0 | ISS |
UniRef100_I1LFR5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LFR5_SOYBN | SoyBase | E_val: 0 | ISS |
Glyma11g00580 not represented in the dataset |
Glyma11g00580 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma.11g003500 | Wm82.a2.v1 | IGC | As supplied by JGI |
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g00580.1 sequence type=CDS gene model=Glyma11g00580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGGCGAACAAATTGCAAGGGGCAATTGTTAGCTGCCATTCCAGAACAAGGCAGTTGTCGATAGATGAGAAAGGGCGCGCCATCTCCGCTGTGCTCACTACTCATCAGGAACCCTTTAAGACTAAGGTTCCTGAGTTGACAATTAGCCATGTGCCCCCACCTACACCCTCCATCAAGAACAAAGACTTCATCATCCCCTCCACCACTAGTGGAAAGTTTGGTAGGTTTGGTGGCAAGTTTGTACCTGAGACACTTGTAGCTTCTTTGACCCAGCTCGAAGCAGAGTTCAAAAACGCCCTCCGTGATCATGCTTTTCAGGCAGAGCTAGCGGAGGCATTAAGAGACTATGCGGGGAGAGAGACACCTCTGTATCATGCAAAGCGATTGTCGGAGTATTACAAGAGCGTGAATAATGGGAAGGGGCCTGACATATACTTAAAGAGAGAGGATCTCAACCACAGTGGCTCTCACAAGATGAACAACGCTCTTGCTCAAGCCATGATTGCTAAGCGCATGGGCTGCAAAAGCGTCGTCACCGCCACTGGCTCTGGACAACATGGCCTTGCAACAGCTGCAGCTTGCGCAAAACTTGCTTTGGACTGCACCGTCTTCATGGCCGACAAAGACATCCACAGACAATATTCAAATGTGAGGTTGATCAAGTTGTTGGGAGCTCAGGTTGAAGCAGTAGATGGAGGGTTCACAGATGCAGCATCAGAGGCGTTTCGGTATTGGGTAGGGGATTTGGAAAACAGGTACCACTTGAGTGGCTCAGCGGTGGGACCACACCCGTGTCCAACCATGGTTCGGGAGTTTCAGTCAGTGATAGGGAAAGAAACGAGGATGCAAGCATTGGAAAAATGGGGTGGGAAGCCAGATGTTCTTGTTGCCAGCGTAGGGACTGGGTCAAACGCTTTGGGTCTGTTTCATGAGTTTATAGCAGACAAAGATGTGAGGTTCGTTGGAGTTGAGGCTGGGGGTTTGGGCTTGGAGAGTGGAAAGCATTCTTCAACGTTGACCACAGGAGAAGTGGGTGCGTACCATGGAGCCATCAGCTATTTACTGCAGGACCAAGATGGTCAAATTATTCATCCACATTCCATCGCTGCTGGGATGGAGTATCCAGGAGTTGGTCCAGAGTTAAGCTTCCTTAAAGAAAGCGGGCGTGCGGAATTCTGCGTTGCAAATGATGAAGAGGCTCTTGATGCGTACCAAAGACTATGCAAATTAGAGGGCATATTTCCCTCTTTGGAGGCCGCACATGCATTGGCTATCTTAGATAAATTGGTCCCTACTCTATGCAATGGTACTAAGGTTGTTGTGAATTGTAGTGGGCGAGGAGATAAGGATGCAGCAATAGTCTTCAATCGGGGAATATATATTTGA
>Glyma11g00580.1 sequence type=predicted peptide gene model=Glyma11g00580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMANKLQGAIVSCHSRTRQLSIDEKGRAISAVLTTHQEPFKTKVPELTISHVPPPTPSIKNKDFIIPSTTSGKFGRFGGKFVPETLVASLTQLEAEFKNALRDHAFQAELAEALRDYAGRETPLYHAKRLSEYYKSVNNGKGPDIYLKREDLNHSGSHKMNNALAQAMIAKRMGCKSVVTATGSGQHGLATAAACAKLALDCTVFMADKDIHRQYSNVRLIKLLGAQVEAVDGGFTDAASEAFRYWVGDLENRYHLSGSAVGPHPCPTMVREFQSVIGKETRMQALEKWGGKPDVLVASVGTGSNALGLFHEFIADKDVRFVGVEAGGLGLESGKHSSTLTTGEVGAYHGAISYLLQDQDGQIIHPHSIAAGMEYPGVGPELSFLKESGRAEFCVANDEEALDAYQRLCKLEGIFPSLEAAHALAILDKLVPTLCNGTKVVVNCSGRGDKDAAIVFNRGIYI*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||