Glyma11g00580 - SoyBase

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Report for Sequence Feature Glyma11g00580

Feature Type:	gene_model
Chromosome:	Gm11
Start:	251849
stop:	254871
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g00580

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G28237	AT	Annotation by Michelle Graham. TAIR10: Pyridoxal-5'-phosphate-dependent enzyme family protein \| chr5:10207477-10213542 REVERSE LENGTH=465	SoyBase	E_val: 0	ISS
GO:0000162	GO-bp	Annotation by Michelle Graham. GO Biological Process: tryptophan biosynthetic process	SoyBase	N/A	ISS
GO:0006568	GO-bp	Annotation by Michelle Graham. GO Biological Process: tryptophan metabolic process	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004834	GO-mf	Annotation by Michelle Graham. GO Molecular Function: tryptophan synthase activity	SoyBase	N/A	ISS
GO:0030170	GO-mf	Annotation by Michelle Graham. GO Molecular Function: pyridoxal phosphate binding	SoyBase	N/A	ISS
KOG1395	KOG	Tryptophan synthase beta chain	JGI		ISS
PTHR10314	Panther	PYRIDOXAL-5-PHOSPHATE DEPENDENT BETA FAMILY	JGI		ISS
PTHR10314:SF3	Panther	CYSTEINE SYNTHASE-RELATED	JGI		ISS
PF00291	PFAM	Pyridoxal-phosphate dependent enzyme	JGI		ISS
UniRef100_G7K113	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Tryptophan synthase beta chain n=1 Tax=Medicago truncatula RepID=G7K113_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1LFR5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LFR5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g00580

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma11g00580 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g003500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g00580

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma11g00580

Limit To All Plant Sequences

>Glyma11g00580.1   sequence type=CDS   gene model=Glyma11g00580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGCGAACAAATTGCAAGGGGCAATTGTTAGCTGCCATTCCAGAACAAGGCAGTTGTCGATAGATGAGAAAGGGCGCGCCATCTCCGCTGTGCTCACTACTCATCAGGAACCCTTTAAGACTAAGGTTCCTGAGTTGACAATTAGCCATGTGCCCCCACCTACACCCTCCATCAAGAACAAAGACTTCATCATCCCCTCCACCACTAGTGGAAAGTTTGGTAGGTTTGGTGGCAAGTTTGTACCTGAGACACTTGTAGCTTCTTTGACCCAGCTCGAAGCAGAGTTCAAAAACGCCCTCCGTGATCATGCTTTTCAGGCAGAGCTAGCGGAGGCATTAAGAGACTATGCGGGGAGAGAGACACCTCTGTATCATGCAAAGCGATTGTCGGAGTATTACAAGAGCGTGAATAATGGGAAGGGGCCTGACATATACTTAAAGAGAGAGGATCTCAACCACAGTGGCTCTCACAAGATGAACAACGCTCTTGCTCAAGCCATGATTGCTAAGCGCATGGGCTGCAAAAGCGTCGTCACCGCCACTGGCTCTGGACAACATGGCCTTGCAACAGCTGCAGCTTGCGCAAAACTTGCTTTGGACTGCACCGTCTTCATGGCCGACAAAGACATCCACAGACAATATTCAAATGTGAGGTTGATCAAGTTGTTGGGAGCTCAGGTTGAAGCAGTAGATGGAGGGTTCACAGATGCAGCATCAGAGGCGTTTCGGTATTGGGTAGGGGATTTGGAAAACAGGTACCACTTGAGTGGCTCAGCGGTGGGACCACACCCGTGTCCAACCATGGTTCGGGAGTTTCAGTCAGTGATAGGGAAAGAAACGAGGATGCAAGCATTGGAAAAATGGGGTGGGAAGCCAGATGTTCTTGTTGCCAGCGTAGGGACTGGGTCAAACGCTTTGGGTCTGTTTCATGAGTTTATAGCAGACAAAGATGTGAGGTTCGTTGGAGTTGAGGCTGGGGGTTTGGGCTTGGAGAGTGGAAAGCATTCTTCAACGTTGACCACAGGAGAAGTGGGTGCGTACCATGGAGCCATCAGCTATTTACTGCAGGACCAAGATGGTCAAATTATTCATCCACATTCCATCGCTGCTGGGATGGAGTATCCAGGAGTTGGTCCAGAGTTAAGCTTCCTTAAAGAAAGCGGGCGTGCGGAATTCTGCGTTGCAAATGATGAAGAGGCTCTTGATGCGTACCAAAGACTATGCAAATTAGAGGGCATATTTCCCTCTTTGGAGGCCGCACATGCATTGGCTATCTTAGATAAATTGGTCCCTACTCTATGCAATGGTACTAAGGTTGTTGTGAATTGTAGTGGGCGAGGAGATAAGGATGCAGCAATAGTCTTCAATCGGGGAATATATATTTGA

Predicted protein sequences of Glyma11g00580

Limit To All Plant Sequences

>Glyma11g00580.1   sequence type=predicted peptide   gene model=Glyma11g00580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMANKLQGAIVSCHSRTRQLSIDEKGRAISAVLTTHQEPFKTKVPELTISHVPPPTPSIKNKDFIIPSTTSGKFGRFGGKFVPETLVASLTQLEAEFKNALRDHAFQAELAEALRDYAGRETPLYHAKRLSEYYKSVNNGKGPDIYLKREDLNHSGSHKMNNALAQAMIAKRMGCKSVVTATGSGQHGLATAAACAKLALDCTVFMADKDIHRQYSNVRLIKLLGAQVEAVDGGFTDAASEAFRYWVGDLENRYHLSGSAVGPHPCPTMVREFQSVIGKETRMQALEKWGGKPDVLVASVGTGSNALGLFHEFIADKDVRFVGVEAGGLGLESGKHSSTLTTGEVGAYHGAISYLLQDQDGQIIHPHSIAAGMEYPGVGPELSFLKESGRAEFCVANDEEALDAYQRLCKLEGIFPSLEAAHALAILDKLVPTLCNGTKVVVNCSGRGDKDAAIVFNRGIYI*

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