Glyma11g00560 - SoyBase

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Report for Sequence Feature Glyma11g00560

Feature Type:	gene_model
Chromosome:	Gm11
Start:	219436
stop:	222090
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g00560

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G20580	AT	Annotation by Michelle Graham. TAIR10: COBRA-like protein 10 precursor \| chr3:7188063-7190416 REVERSE LENGTH=672	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0031225	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: anchored to membrane	SoyBase	N/A	ISS
PF04833	PFAM	COBRA-like protein	JGI		ISS
UniRef100_G7K110	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: COBRA-like protein n=1 Tax=Medicago truncatula RepID=G7K110_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1LFR3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1LFR3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g00560

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g00560

Paralog	Evidence	Comments
Glyma01g45080	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g00560 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g003300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g00560

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma11g00560

Limit To All Plant Sequences

>Glyma11g00560.1   sequence type=CDS   gene model=Glyma11g00560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTAGTCCATTGCTATCATTATCATTAGTGCTGCTATTCTTGATTTCATGTGGAAATATTCATGAATGTGAAGCTCAAGATACCGAGGCTTTGCCTCCAGCAGCAGAAACTTGTAACGGGGTTTTCATTTCCTATGACTTTCTCACTCGAAGAAAAGAATTCCCTCGCGTGAAGAATGCCACGGCACAGTCTTGGGCCTTCAATTCCACCGCAACAGTTCTCAACACCGGCAAAGACGTGGTTAAGGCGTGGAGGCTGTTCATAGGTTTTCAACATGACGAGATTCTAATCTCTGCCAGCGGAGGTAATCTAATCGATGGAACTGACTTCCCTGCTCTGGTAGGAAATGGCACTACCTTTGTTGGATCTTCTGTGCCAGATTTGGATAGCTCCATCAACACAGCTCAAGATTTAACCCAAATTTCAGCCATGATCCAGCTTATTGGCACCCAGTTTGGAGTAAGGCCTCCTACTATTCCTATGCCCAAAACCATCAAGTTGGTAAATGATGGTTACAAGTGCCCCCTACCAACTACCCGTAAGGGTTCCATGTATGCGTGTTGTAAAAAAGACCCTAAATTCAAGGCTGTACTACGGAAGACAAAATTCTTGCCACGGCAACAAGGGGATCTTACCATATCCTATGACGTGAATCAAGTGTATGAGAATAATTATATGGTAGAGGTGACCATGGAGAACAATCACCTTTTGGGACGGCTGGATCATTGGAACTTGACTTGGGAGTGGACAAGAGGGGAGTTTATATACAGTATGAAAGGTGCTTTCACACGTGTGATAGAATATTCAGGTTGCATCTATGGAGCTGCAGGACAGTATTACAAGGACATGGATTTTTCTAAAGTCGTTAACTGTCAAAAGAATCCAATAATCAGTGACTTGCCTCCAGAGAAAGCTAATGACACTGAAATTGGAAAGATACCTCACTGTTGCAAAAACGGAACTCTTCTACCTATCCTTATGGATCCAAGCAAATCCAAGTCTGTTTTCCAAATGCAAGTGTTCAAAGTTCCACCTGATCTAAACAAAACAGCAATTTTCCCTCCAGAGAAATGGAAAATAACGGGCATTCTCAACCCGGAATACAGATGTGGGGCACCTATTAGAGTGGATCCTGCACAATCTCAAGATCCCAGGGGACTTGAAGCAACGGTTATTGCCATTTCAAGTTGGCAAATAGTCTGCAATATCACTAAGCCAACCAAGAGGAGCACTCGCTGCTGTGTTTCTTTCTCTGCTTATTACAATGAGTCCATAGTACCTTGCAACACATGTGCCTGTGGTTGTGATGAAAATAACAGAAGATGTAATCCGAATTCACCAGCAATGCTTCTCCCTCCAGAAGCTCTTCTTGTACCCTTTGAGAATAGGACAAAAAAGACAGTTGCTTGGGCCAAACTAAAGCATTTTAAAGTCCCAACAAAATTACCATGTGCTGACAACTGTGGAGTTAGCATAAACTGGCATGTAGTTTCGGACTTCAAAGGTGGGTGGAGTGCCAGAATCACTATGTTCAATTGGCAGCATACGAATTTTGAGAATTGGTTCACTGCACTGCAATTCAAGAAGAAGACTGCTCTTGGTTACGAAAAAGTTTATTCTTTTAATGGAACATTCCTTCCGAAGCTCAATCATACTATTTTCTTGCAAGGAACACAAGGATCAAACTTTTTGTTAGCTTTAGACAATGGAACAAACCCAAAGGTGCCCGGAAAAGCACAATCTGTTCTTTCCTTTACTAAGAAGTTTGCACCAGGCATGAAAATTGCAAAAGGAGATGGGTTCCCATCAAGGGTCTTTTTTAATGGTGAAGAGTGTTCTATTCCTACCCGTTTCCCTGTGGGAAATGGAAACCAACATAATGCAGATTCATTAAACCTACACCTACTATTAGCTTTAGTCCTAGCTTTTACAATGAGTATAATATTGTATTAA

Predicted protein sequences of Glyma11g00560

Limit To All Plant Sequences

>Glyma11g00560.1   sequence type=predicted peptide   gene model=Glyma11g00560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPSPLLSLSLVLLFLISCGNIHECEAQDTEALPPAAETCNGVFISYDFLTRRKEFPRVKNATAQSWAFNSTATVLNTGKDVVKAWRLFIGFQHDEILISASGGNLIDGTDFPALVGNGTTFVGSSVPDLDSSINTAQDLTQISAMIQLIGTQFGVRPPTIPMPKTIKLVNDGYKCPLPTTRKGSMYACCKKDPKFKAVLRKTKFLPRQQGDLTISYDVNQVYENNYMVEVTMENNHLLGRLDHWNLTWEWTRGEFIYSMKGAFTRVIEYSGCIYGAAGQYYKDMDFSKVVNCQKNPIISDLPPEKANDTEIGKIPHCCKNGTLLPILMDPSKSKSVFQMQVFKVPPDLNKTAIFPPEKWKITGILNPEYRCGAPIRVDPAQSQDPRGLEATVIAISSWQIVCNITKPTKRSTRCCVSFSAYYNESIVPCNTCACGCDENNRRCNPNSPAMLLPPEALLVPFENRTKKTVAWAKLKHFKVPTKLPCADNCGVSINWHVVSDFKGGWSARITMFNWQHTNFENWFTALQFKKKTALGYEKVYSFNGTFLPKLNHTIFLQGTQGSNFLLALDNGTNPKVPGKAQSVLSFTKKFAPGMKIAKGDGFPSRVFFNGEECSIPTRFPVGNGNQHNADSLNLHLLLALVLAFTMSIILY*

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