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Report for Sequence Feature Glyma11g00450

Feature Type:gene_model
Chromosome:Gm11
Start:119760
stop:121018
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G47370AT Annotation by Michelle Graham. TAIR10: Ribosomal protein S10p/S20e family protein | chr3:17453671-17454437 REVERSE LENGTH=122 SoyBaseE_val: 8.00E-79ISS
GO:0001510GO-bp Annotation by Michelle Graham. GO Biological Process: RNA methylation SoyBaseN/AISS
GO:0006412GO-bp Annotation by Michelle Graham. GO Biological Process: translation SoyBaseN/AISS
GO:0005618GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cell wall SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005730GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleolus SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0005840GO-cc Annotation by Michelle Graham. GO Cellular Compartment: ribosome SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0015935GO-cc Annotation by Michelle Graham. GO Cellular Compartment: small ribosomal subunit SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0022626GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome SoyBaseN/AISS
GO:0022627GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosolic small ribosomal subunit SoyBaseN/AISS
GO:0003723GO-mf Annotation by Michelle Graham. GO Molecular Function: RNA binding SoyBaseN/AISS
GO:0003735GO-mf Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome SoyBaseN/AISS
KOG0900 KOG 40S ribosomal protein S20 JGI ISS
PTHR11700Panther 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER JGI ISS
PF00338PFAM Ribosomal protein S10p/S20e JGI ISS
UniRef100_A2Q4V6UniRef Annotation by Michelle Graham. Most informative UniRef hit: 40S ribosomal protein S20-2 n=1 Tax=Medicago truncatula RepID=A2Q4V6_MEDTR SoyBaseE_val: 2.00E-78ISS
UniRef100_I1LFQ4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LFQ4_SOYBN SoyBaseE_val: 2.00E-83ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g00450 not represented in the dataset

Glyma11g00450 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma01g45270 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g002400 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma11g00450.1   sequence type=CDS   gene model=Glyma11g00450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTACGCTGCAATGAAGCCTACTAAGGCCGGCTTGGAGGAGCCTCAGGAGCAGATCCATAAGATTAGGATCACCCTTTCCTCTAAGAACGTCAAGAATCTCGAGAAAGTGTGCGCCGACCTTGTTCGTGGTGCCAAGGACAAGCGCCTCAGGGTGAAGGGACCTGTTAGGATGCCAACTAAAGTACTTAACATCACCACCAGGAAATCCCCGTGTGGTGAAGGCACCAACACATGGGACAGATTTGAGCTGCGTGTGCACAAGAGAATTATTGATCTCTACAGTTCCCCTGATGTGGTTAAGCAGATTACTTCAATCACAATTGAACCGGGTGTTGAGGTCGAGGTCACCATTGCAGATGCTTGA

>Glyma11g00450.1   sequence type=predicted peptide   gene model=Glyma11g00450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAYAAMKPTKAGLEEPQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRIIDLYSSPDVVKQITSITIEPGVEVEVTIADA*







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