SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G19630 | AT | Annotation by Michelle Graham. TAIR10: Radical SAM superfamily protein | chr3:6818676-6820674 REVERSE LENGTH=372 | SoyBase | E_val: 0 | ISS |
| GO:0006364 | GO-bp | Annotation by Michelle Graham. GO Biological Process: rRNA processing | SoyBase | N/A | ISS |
| GO:0006396 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA processing | SoyBase | N/A | ISS |
| GO:0022402 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell cycle process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0008173 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA methyltransferase activity | SoyBase | N/A | ISS |
| GO:0051536 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: iron-sulfur cluster binding | SoyBase | N/A | ISS |
| PF04055 | PFAM | Radical SAM superfamily | JGI | ISS | |
| UniRef100_G7K0W5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ribosomal RNA large subunit methyltransferase N n=2 Tax=Medicago truncatula RepID=G7K0W5_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LFP7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LFP7_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma11g00390 not represented in the dataset |
Glyma11g00390 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g45360 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g001700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g00390.1 sequence type=CDS gene model=Glyma11g00390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAATCCGATCGGTATTCGATGGCGGCGAGCTGAGAAGGGAAGTGGAGAAAAGTGGAATTGACCCAAAATTCATTCCAAAGATATGGAAGCATATCCTCATCTCTGCCAAAGATGAAGATTGGGATTGGGAGAAACAAGTTCCCTCCTTGCCCTCTTCGGCCTACTCTCTCCTTCGTTCCAACTTCAAAACCCCTCTCTCTTCCTCTATTCACTCCGTTTTCCACTCTGCCGACAACCTCACCACCAAGCTCCTCATCCAGCTCCACCACAATCATGGACCTTTCGTCGAGGCTGTCATTATGAGGTACGATACTCGTTTGGGCAAATATGCCGGCCAACCTCGCCCCGGTGGTCTCAGAGCTACTTTGTGTATTTCTTCTCAGGTTGGATGCAAAATGGGTTGCAATTTCTGTGCCACTGGATCCATGGGATTCAAAAACAACCTATCATCCGGTGAAATTGTGGAACAGCTCGTTCATGCCTCTACCTTCTCACAAATCCGTAATGTTGTCTTCATGGGCATGGGAGAGCCTCTCAACAACTATTCTGCTGTGGTAGAAGCCGTTCGCATCATGACTGGGTTGCCATTTCAATTGTCATCCAAAAGGATTACCATCTCAACGGTTGGCATCATTCATGCTATCAACAAGCTTCATGATGACCTGCCTGGTTTGAACTTGGCTGTCTCACTGCATGCGCCGGCCCAAGACATCCGTTGCCAGATAATGCCTGCTGCTCGTGCTTTTCCTTTGGGAAAACTCATGGATTCACTGCAAGTCTATCAAAGGAAAAGTCTGCAGAAAATATTTATTGAATACATAATGCTTGATGGGGTGAACGACGAAGAGCACCATGCCCACCTATTGGGAAAACTGTTGGAGACATTTCAAGTGGTTGTGAACTTAATACCTTTCAACTCTATTGGTACCTTGAGTCAATTCAAACCTACCAGTGAGCAGAAAGTCTCAAATTTTCAGAAAATTCTTAGGGGTACCTATAATATTCGAACAACAGTTCGGAAGCAGATGGGTCAGGACATAAGTGGTGCTTGTGGACAATTGCTGGTGAACATATCTGACAAGTCCCTTGGCACTGCAGTTCCCCTAACGGACATAGAAGATATTGTTATCTGA
>Glyma11g00390.1 sequence type=predicted peptide gene model=Glyma11g00390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGIRSVFDGGELRREVEKSGIDPKFIPKIWKHILISAKDEDWDWEKQVPSLPSSAYSLLRSNFKTPLSSSIHSVFHSADNLTTKLLIQLHHNHGPFVEAVIMRYDTRLGKYAGQPRPGGLRATLCISSQVGCKMGCNFCATGSMGFKNNLSSGEIVEQLVHASTFSQIRNVVFMGMGEPLNNYSAVVEAVRIMTGLPFQLSSKRITISTVGIIHAINKLHDDLPGLNLAVSLHAPAQDIRCQIMPAARAFPLGKLMDSLQVYQRKSLQKIFIEYIMLDGVNDEEHHAHLLGKLLETFQVVVNLIPFNSIGTLSQFKPTSEQKVSNFQKILRGTYNIRTTVRKQMGQDISGACGQLLVNISDKSLGTAVPLTDIEDIVI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
