SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G43740 | AT | Annotation by Michelle Graham. TAIR10: Leucine-rich repeat (LRR) family protein | chr3:15644127-15645446 FORWARD LENGTH=218 | SoyBase | E_val: 2.00E-89 | ISS |
| GO:0007165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: signal transduction | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| PTHR24420 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24420:SF836 | Panther | JGI | ISS | ||
| PF00560 | PFAM | Leucine Rich Repeat | JGI | ISS | |
| PF08263 | PFAM | Leucine rich repeat N-terminal domain | JGI | ISS | |
| UniRef100_C6ZS01 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Leucine-rich repeat family protein n=1 Tax=Glycine max RepID=C6ZS01_SOYBN | SoyBase | E_val: 1.00E-115 | ISS |
| UniRef100_I1LFP1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LFP1_SOYBN | SoyBase | E_val: 2.00E-149 | ISS |
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Glyma11g00320 not represented in the dataset |
Glyma11g00320 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g001200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g00320.2 sequence type=transcript gene model=Glyma11g00320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GATGAAATTTGATTAACATAATATTACTTGAACAGTTTAACTTAATGGAAATGCCAAGGCAAGTCATTGATTCGTTGAGTATGAGTCCCAATCCCAGACCACACGATACAATAACCATGACTTGACTTTTGTATCTGAGTGCCAGCCCCTCTATATTGACTTTGACTTGGTCTCTCTCTCTCTCTCTCTCTTTCTTTCACCATTCCCTTGTTCTTAGTTTTTACTTCCATCCCTCTTCCAAGTCTCAGAAACGTATAGGAAGATGTCTAGTTTGGTTTTGTTGTCCGTGTTATTTCTCCTTCTCCAACGTCCTCTCTCATCCTTCTCAGCCAACTCCGAAGGAAACGCTCTTCATGCTTTGAGAAGCAGGCTTTCTGACCCCAGCAACGTGCTTCAGAGCTGGGACCCAAATCTCGTTAATGCTTGTACTTGGTTTCATGTTACCTGCGACTCCAACAATCACGTCATTCGCTTAGACTTGGGCAATTCTAAGCTCTCCGGAACTTTGGGACCAGAACTTGCCCAGCTACCCCACCTCCAATACCTGGAGCTCTACAGGAATAACATAAGTGGCAACATTCCTCGGGAACTTTCTAAATTGAAGAACCTTATTAGTATGGATTTGTATGACAACCAATTTCATGGCAAAATCCCCAAGTCTTTTGGCAACTTGAACTCACTTAAATTTCTACGCCTAAACAACAACAAACTGACAGGAGCGATCCCAAGAGAGCTCACTCATCTTAAAAATCTCAAAATCCTGTTAGATTCTCTTTCCCTACTTTCTTTTACTTTTCATGTCGTCTGAGGAAAAGCCAAGTTCCATTTCATTCCTTTTTTTCTTTTTTTGTTGTTGTTGTTGATTTA
>Glyma11g00320.1 sequence type=CDS gene model=Glyma11g00320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCTAGTTTGGTTTTGTTGTCCGTGTTATTTCTCCTTCTCCAACGTCCTCTCTCATCCTTCTCAGCCAACTCCGAAGGAAACGCTCTTCATGCTTTGAGAAGCAGGCTTTCTGACCCCAGCAACGTGCTTCAGAGCTGGGACCCAAATCTCGTTAATGCTTGTACTTGGTTTCATGTTACCTGCGACTCCAACAATCACGTCATTCGCTTAGACTTGGGCAATTCTAAGCTCTCCGGAACTTTGGGACCAGAACTTGCCCAGCTACCCCACCTCCAATACCTGGAGCTCTACAGGAATAACATAAGTGGCAACATTCCTCGGGAACTTTCTAAATTGAAGAACCTTATTAGTATGGATTTGTATGACAACCAATTTCATGGCAAAATCCCCAAGTCTTTTGGCAACTTGAACTCACTTAAATTTCTACGCCTAAACAACAACAAACTGACAGGAGCGATCCCAAGAGAGCTCACTCATCTTAAAAATCTCAAAATCCTTGATGTTTCTAATAATGACCTCTGTGGAACAATACCAGTAGATGGCAACTTTGAATCCTTCCCGATGGAAAGTTTTGAGAATAACAAACTCAGCGGCCCAGAGCTGAAAGGATTGGTTCCTTATGATTTTGGATGCTGA >Glyma11g00320.2 sequence type=CDS gene model=Glyma11g00320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCTAGTTTGGTTTTGTTGTCCGTGTTATTTCTCCTTCTCCAACGTCCTCTCTCATCCTTCTCAGCCAACTCCGAAGGAAACGCTCTTCATGCTTTGAGAAGCAGGCTTTCTGACCCCAGCAACGTGCTTCAGAGCTGGGACCCAAATCTCGTTAATGCTTGTACTTGGTTTCATGTTACCTGCGACTCCAACAATCACGTCATTCGCTTAGACTTGGGCAATTCTAAGCTCTCCGGAACTTTGGGACCAGAACTTGCCCAGCTACCCCACCTCCAATACCTGGAGCTCTACAGGAATAACATAAGTGGCAACATTCCTCGGGAACTTTCTAAATTGAAGAACCTTATTAGTATGGATTTGTATGACAACCAATTTCATGGCAAAATCCCCAAGTCTTTTGGCAACTTGAACTCACTTAAATTTCTACGCCTAAACAACAACAAACTGACAGGAGCGATCCCAAGAGAGCTCACTCATCTTAAAAATCTCAAAATCCTGTTAGATTCTCTTTCCCTACTTTCTTTTACTTTTCATGTCGTCTGA
>Glyma11g00320.1 sequence type=predicted peptide gene model=Glyma11g00320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSSLVLLSVLFLLLQRPLSSFSANSEGNALHALRSRLSDPSNVLQSWDPNLVNACTWFHVTCDSNNHVIRLDLGNSKLSGTLGPELAQLPHLQYLELYRNNISGNIPRELSKLKNLISMDLYDNQFHGKIPKSFGNLNSLKFLRLNNNKLTGAIPRELTHLKNLKILDVSNNDLCGTIPVDGNFESFPMESFENNKLSGPELKGLVPYDFGC* >Glyma11g00320.2 sequence type=predicted peptide gene model=Glyma11g00320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSSLVLLSVLFLLLQRPLSSFSANSEGNALHALRSRLSDPSNVLQSWDPNLVNACTWFHVTCDSNNHVIRLDLGNSKLSGTLGPELAQLPHLQYLELYRNNISGNIPRELSKLKNLISMDLYDNQFHGKIPKSFGNLNSLKFLRLNNNKLTGAIPRELTHLKNLKILLDSLSLLSFTFHVV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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