SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G34150 | AT | Annotation by Michelle Graham. TAIR10: Calcium-dependent lipid-binding (CaLB domain) family protein | chr4:16355035-16356955 FORWARD LENGTH=247 | SoyBase | E_val: 1.00E-72 | ISS |
| GO:0006612 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane | SoyBase | N/A | ISS |
| GO:0009409 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cold | SoyBase | N/A | ISS |
| GO:0009611 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to wounding | SoyBase | N/A | ISS |
| GO:0009612 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to mechanical stimulus | SoyBase | N/A | ISS |
| GO:0009646 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to absence of light | SoyBase | N/A | ISS |
| GO:0010200 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to chitin | SoyBase | N/A | ISS |
| GO:0010363 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response | SoyBase | N/A | ISS |
| GO:0030968 | GO-bp | Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response | SoyBase | N/A | ISS |
| GO:0043069 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death | SoyBase | N/A | ISS |
| GO:0052542 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response by callose deposition | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| PTHR10024 | Panther | SYNAPTOTAGMIN | JGI | ISS | |
| PTHR10024:SF126 | Panther | C2 DOMAIN-CONTAINING PROTEIN | JGI | ISS | |
| PF00168 | PFAM | C2 domain | JGI | ISS | |
| UniRef100_G7ZVA3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Elicitor-responsive protein n=1 Tax=Medicago truncatula RepID=G7ZVA3_MEDTR | SoyBase | E_val: 5.00E-86 | ISS |
| UniRef100_I1LFN5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LFN5_SOYBN | SoyBase | E_val: 2.00E-177 | ISS |
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Glyma11g00250 not represented in the dataset |
Glyma11g00250 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g45560 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g000700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g00250.1 sequence type=CDS gene model=Glyma11g00250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCGTCGATAACGGGCATCCAGGGGCAACCTCTTGAGGTTACGGTGGTTTCGTGCTCCAAGTTGAAGGACACAGAATGGATTTCAAGACAAGATCCGTACGTTTGTGTTGAGTATGGCAGCACAAAGTTCCGAACCAGAACCTGCACAGACGGCGGAAAAAACCCGGTATTCCAAGAGAAGTTCATCTTTCCCCTCATTGAAGGCCTTCGGGAGCTCAATGTCCTTGTTTGGAACAGCAATACTCTCACCTTCGACGATTTTATAGGAAGCGGAAAGATTCAATTGCACAAGGTTCTCTCTCAAGGCTTCGATGACTCTGCTTGGCCACTTCAGACCAAAACTGGCAGATACGCTGGTGAAGTAAAAGTCATATTGCATTACGCAATTGCAAATCAAAGGCATAAATTAGTGTCAGGCCATGCTCCATCAGCACCTCCGTATGTGGCAACAGCAACTCCTCCCGTCCCTTCTTCATATTCTACTTCATACCCGCCACCTCCTTCTGCTACTTCCTACCCACCACCACCATCACCTCCCTCTGCAACTCCTTACCATACAACTGGATCTTATTCTTACCCACCGCCGCCGCCACCTCCTACAGCTTACCCTCCCTATTCCTCACATTCATCTCCCTATCCACCATCATCATACCCCCCACAGCCCTCCTCGTATCCTCCTCCTCCTCCCCCATCATCATATCCCCCTGCTTCAGCTTATCCATATCCACCACCTGCAGGCTATCCTTCTGGAATATACCCTCCACCACCTTACTGA
>Glyma11g00250.1 sequence type=predicted peptide gene model=Glyma11g00250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSSITGIQGQPLEVTVVSCSKLKDTEWISRQDPYVCVEYGSTKFRTRTCTDGGKNPVFQEKFIFPLIEGLRELNVLVWNSNTLTFDDFIGSGKIQLHKVLSQGFDDSAWPLQTKTGRYAGEVKVILHYAIANQRHKLVSGHAPSAPPYVATATPPVPSSYSTSYPPPPSATSYPPPPSPPSATPYHTTGSYSYPPPPPPPTAYPPYSSHSSPYPPSSYPPQPSSYPPPPPPSSYPPASAYPYPPPAGYPSGIYPPPPY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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