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Report for Sequence Feature Glyma11g00220

Feature Type:gene_model
Chromosome:Gm11
Start:14317
stop:24370
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma11g00220
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G38130AT Annotation by Michelle Graham. TAIR10: histone deacetylase 1 | chr4:17896493-17899057 REVERSE LENGTH=501 SoyBaseE_val: 0ISS
GO:0009294GO-bp Annotation by Michelle Graham. GO Biological Process: DNA mediated transformation SoyBaseN/AISS
GO:0009405GO-bp Annotation by Michelle Graham. GO Biological Process: pathogenesis SoyBaseN/AISS
GO:0009861GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid and ethylene-dependent systemic resistance SoyBaseN/AISS
GO:0016573GO-bp Annotation by Michelle Graham. GO Biological Process: histone acetylation SoyBaseN/AISS
GO:0016575GO-bp Annotation by Michelle Graham. GO Biological Process: histone deacetylation SoyBaseN/AISS
GO:0045892GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:2000026GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of multicellular organismal development SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0004407GO-mf Annotation by Michelle Graham. GO Molecular Function: histone deacetylase activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
KOG1342 KOG Histone deacetylase complex, catalytic component RPD3 JGI ISS
PTHR10625Panther HISTONE DEACETYLASE JGI ISS
PTHR10625:SF28Panther HISTONE DEACETYLASE 1, 2 ,3 JGI ISS
PF00850PFAM Histone deacetylase domain JGI ISS
UniRef100_I1LFN1UniRef Annotation by Michelle Graham. Best UniRef hit: Histone deacetylase n=1 Tax=Glycine max RepID=I1LFN1_SOYBN SoyBaseE_val: 0ISS
UniRef100_I1LFN1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Histone deacetylase n=1 Tax=Glycine max RepID=I1LFN1_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma11g00220
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g00220
ParalogEvidenceComments
Glyma01g45660 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g00220 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g000300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma11g00220
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma11g00220
>Glyma11g00220.3   sequence type=CDS   gene model=Glyma11g00220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAGTGGAGGGAACTCCCTTCCATCAGGGTCAGATGGTGTGAAGAGAAAGGTTTCATATTTCTATGATCCAGAGGTTGGAAACTATTATTATGGGCAGGGACACCCAATGAAACCTCATAGGATTCGAATGACACATGCTCTTTTAGCCCACTATGGATTGCTTCAACACATGCAGGTCCTGAAGCCTACGGCTGCTAAAGATAGGGACCTTTGCAAGTTCCATGCTGATGATTATGTGGCCTTTTTGAGAGGCATCACCCCTGAAACGCAGCAAGATCAATTGAGACAGCTGAAGAGGTTTAATGTTGGCGAAGACTGCCCTGTATTTGATGGTCTTTACTCCTTCTGCCAGACATATGCAGGAGGTTCTGTTGGTGGTGCTCTAAAATTGAACCACGGAGCATGCGATGTCGCAATAAATTGGGCTGGTGGTCTACATCATGCAAAGAAGTGTGAGGCTTCTGGGTTTTGCTATGTTAATGACATTGTGCTGGCTATTTTGGAACTTCTCAAAATACATGAGCGTGTTCTGTATGTGGACATTGATATCCACCATGGTGATGGTGTAGAGGAGGCCTTTTACACCACTGACAGGGTCATGACTGTTTCGTTTCATAAGTTTGGGGATTACTTTCCTGGAACAGGTGATATTCGCGATATTGGATATGGTAAAGGGAAATATTATTCACTAAATGTTCCCTTGGATGATGGAATTGATGATGAGAGCTATCAGTCCTTGTTTAAGCCAATAATGGGAAAGGTTATGGAGATTTTTAGGCCTGGTGCTGTTGTATTACAATGTGGTGCCGACTCTTTATCTGGGGACAGATTAGGTTGTTTCAATCTTTCCATAAAAGGTCATGCAGAGTGTGTCAGACATATGAGATCTTTTAATGTTCCCCTTCTATTGCTCGGGGGAGGTGGCTATACAATAAGAAATGTGGCACGTTGTTGGTGTTACGAGACTAGCGTTGCTCTTGGGATTGAACTAGATGATAAGATGCCTCAACATGAGTATTACGAATATTTTGGTCCTGACTATACTCTTCATGTTGCTCCAAGTAACATGGAAAACAAGAACTCCCGACATTTATTGGATGAAATAAGAGCAAAACTTCTTGATAATTTATCTAGGCTTCAACATGCACCAAGTGTCCCATTCCAGGAACGGCCACCTGATGCAGAGCTTCTAGAGAGAGATGAAGATCAAGATGATAGAGATGAAAGATGGGATCCTGATTCTGACAGGGAGGCTGACAATGACAGCAATCCTGTTCGCAGAAGGGTGAAAAGTGAATGTGTTGAAGCTGAGGATAAAGATGCAGAAAGTTATGATAAACCTCTAGATTGTGGAAGAGATTTTCTCATGCCTTTCAAGGAGATTTCATGCTCCAAGGTGTTGGGGGTGGACTCAATGGCAGTGGATGAACCATGCATCAAAGAGGAGCAGGATAATTTAAAAGAGCTTTCTGATCACAGGTCACGATGA
Predicted protein sequences of Glyma11g00220
>Glyma11g00220.3   sequence type=predicted peptide   gene model=Glyma11g00220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESGGNSLPSGSDGVKRKVSYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQVLKPTAAKDRDLCKFHADDYVAFLRGITPETQQDQLRQLKRFNVGEDCPVFDGLYSFCQTYAGGSVGGALKLNHGACDVAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKIHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYGKGKYYSLNVPLDDGIDDESYQSLFKPIMGKVMEIFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVRHMRSFNVPLLLLGGGGYTIRNVARCWCYETSVALGIELDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRHLLDEIRAKLLDNLSRLQHAPSVPFQERPPDAELLERDEDQDDRDERWDPDSDREADNDSNPVRRRVKSECVEAEDKDAESYDKPLDCGRDFLMPFKEISCSKVLGVDSMAVDEPCIKEEQDNLKELSDHRSR*






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