Glyma11G12830 - SoyBase

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Report for Sequence Feature Glyma11G12830

Feature Type:	gene_model
Chromosome:	Gm11
Start:	9171822
stop:	9175893
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11G12830

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G18850	AT	Annotation by Michelle Graham. TAIR10: lysophosphatidyl acyltransferase 5 \| chr3:6499529-6500840 REVERSE LENGTH=375	SoyBase	E_val: 5.00E-177	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0016746	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring acyl groups	SoyBase	N/A	ISS
KOG1505	KOG	Lysophosphatidic acid acyltransferase LPAAT and related acyltransferases	JGI		ISS
PTHR10983	Panther	1-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE	JGI		ISS
PTHR10983:SF10	Panther	LYSOCARDIOLIPIN ACYLTRANSFERASE-RELATED	JGI		ISS
PF01553	PFAM	Acyltransferase	JGI		ISS
UniRef100_B2LWM5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 1-acyl-sn-glycerol-3-phosphate acyltransferase n=1 Tax=Ricinus communis RepID=B2LWM5_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1LJG8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LJG8_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma11G12830

Locus	Gene Symbol	Protein Name
	LPAT	Lysophosphatidyl acyltransferase

Expression Patterns of Glyma11G12830

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11G12830 not represented in the dataset	Glyma11G12830 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11G12830

Paralog	Evidence	Comments
Glyma12g04980	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11G12830 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g120600	Wm82.a2.v1	IGC	As supplied by JGI
Glyma11g12830	Wm82.a1.v1.1	IGC	Correspondences based on a combination of genome sequence coordinate overlap (fjoin) and sequence similarity (ungapped blastn)

References for Glyma11G12830

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma11G12830

Limit To All Plant Sequences

>Glyma11g12830.2   sequence type=transcript   gene model=Glyma11g12830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGGTGGCAACCTTCGTAGTTTCACACATTTTGAAGCTTTTTTCATTCACAAACATGTGCTTTATTTTTGTTCAGCTTGAAACATCACCAGTTGAGAGTAGAAGAGGGTACTATTATTGCAGAACACTGCCCACAATCTATTCTAGACCTTACGTATAACTCCTACCTATCTAATCTAACTGTTCAACCAAACAAGGTACAACCACCGACTCCATTGTGTTTTTCTACATCTCAATGTCTCTCTGGGGCTGACAAAAATGCCACAAGCTTGAACAAAGGTACGTTCATTTTGTGCCAAAACTGTCAAAAATCATTCTCTTATTGGGTCATCAACTACAAGGACAAAACAGCTGGCAGAGTCCTGCTGTTTTTTGTCTGCATCACTACAAGAAACCTGGTGGCCAGAGTAATTCTTTTATGAAGCCTGCGATTGTTTTTGATAGTTGCTTATGGCTGTTCTTAAACCAGTAAGTTCTTGCTTTGGAGCAAAGTATCAAGCTCTAGCACCATGGAGAATTTTAAGGGGTCTGGTGTGTCTACTAGTGCTTCTTTCAACAGCATTTATAATGTTAGTGTTCTTTGGTTTTATCAGTGCTGTTATAATGCGACTTTTTAGCGTCATTTACAGCAGGAGAGCAACTTCCTTTTTCTTTGGTGCTTGGCTAGCCTTGTGGCCTTTTCTATTTGAAAAGATCAACAAGACTAAAGTTGTGTTTTCTGGAGATATTGTTCCTTCTAGAGAACGGATCTTATTGATCGCAAATCATAGAACTGAGGTTGATTGGATGTATTTATGGGACCTTGCCTTGCGGAAGGGATGCCTTGGATACATAAAATATATACTTAAGAGTAGCTTGATGAGACTTCCAGTTTTTGGTTGGGCATTTCACATACTAGAGTTCATCCCAGTGGAAAGAAAGTGGGAGGCTGATGAGTCAATCATGCGCTATATGCTTTCAACATTCAAGGATCCACAAGATCCTCTCTGGCTTGCACTTTTCCCAGAAGGCACTGATTTCACTGAGCAAAAGTGCCTTCGGAGTAAAAAATATGCCGCCGAACATGGGTTACCAGTTCTGAAAAATGTTTTACTTCCAAAGACAAAGGGCTTCTGTGCCTGCTTGCAAGAATTGAGGAGCTCTCTCGCTGCAGTTTATGATGTGACCATTGGCTACAAATACCGCTGCCCATCTTTTTTAGATAATGTCTTTGGGGTGGATCCTTCTGAAGTTCATATTCATATCTGCCGCTTTCCCCTTGATAGTATCCCGGTATCTGAAGAGGAAATGTCCATGTGGTTGATAAATAGATTCCAGACGAAGGATCAGTTACTTTCCAATTTTCAAACTCAAGGTCAGTTTCCGGATCAAGCAGCAGAAAGGGACCTCTCTGCTGTTAAGAGCATTTTAAATTGTATGACAATTGTTACAGTGACAGGTACAACGATGTACTACTGTTTTTCCTCATTCTGGTTTAAACTTTATGTGTCTCTAGTCTGTGCTTATTTGGTTCCGGCCACATATTTCAATACTCGGCCGCAGCCCATTCTTAGCTTTTTGAAGGTGATAGCAAGGTAG

>Glyma11g12830.3   sequence type=transcript   gene model=Glyma11g12830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGGTGGCAACCTTCGTAGTTTCACACATTTTGAAGCTTTTTTCATTCACAAACATGTGCTTTATTTTTGTTCAGCTTGAAACATCACCAGTTGAGAGTAGAAGAGGGTACTATTATTGCAGAACACTGCCCACAATCTATTCTAGACCTTACGTATAACTCCTACCTATCTAATCTAACTGTTCAACCAAACAAGGTACAACCACCGACTCCATTGTGTTTTTCTACATCTCAATGTCTCTCTGGGGCTGACAAAAATGCCACAAGCTTGAACAAAGGTACGTTCATTTTGTGCCAAAACTGTCAAAAATCATTCTCTTATTGGGTCATCAACTACAAGGACAAAACAGCTGGCAGAGTCCTGCTGTTTTTTGTCTGCATCACTACAAGAAACCTGGTGGCCAGAGTAATTCTTTTATGAAGTAAGTTCTTGCTTTGGAGCAAAGTATCAAGCTCTAGCACCATGGAGAATTTTAAGGGGTCTGGTGTGTCTACTAGTGCTTCTTTCAACAGCATTTATAATGTTAGTGTTCTTTGGTTTTATCAGTGCTGTTATAATGCGACTTTTTAGCGTCATTTACAGCAGGAGAGCAACTTCCTTTTTCTTTGGTGCTTGGCTAGCCTTGTGGCCTTTTCTATTTGAAAAGATCAACAAGACTAAAGTTGTGTTTTCTGGAGATATTGTTCCTTCTAGAGAACGGATCTTATTGATCGCAAATCATAGAACTGAGGTTGATTGGATGTATTTATGGGACCTTGCCTTGCGGAAGGGATGCCTTGGATACATAAAATATATACTTAAGAGTAGCTTGATGAGACTTCCAGTTTTTGGTTGGGCATTTCACATACTAGAGTTCATCCCAGTGGAAAGAAAGTGGGAGGCTGATGAGTCAATCATGCGCTATATGCTTTCAACATTCAAGGATCCACAAGATCCTCTCTGGCTTGCACTTTTCCCAGAAGGCACTGATTTCACTGAGCAAAAGTGCCTTCGGAGTAAAAAATATGCCGCCGAACATGGGTTACCAGTTCTGAAAAATGTTTTACTTCCAAAGACAAAGGGCTTCTGTGCCTGCTTGCAAGAATTGAGGAGCTCTCTCGCTGCAGTTTATGATGTGACCATTGGCTACAAATACCGCTGCCCATCTTTTTTAGATAATGTCTTTGGGGTGGATCCTTCTGAAGTTCATATTCATATCTGCCGCTTTCCCCTTGATAGTATCCCGGTATCTGAAGAGGAAATGTCCATGTGGTTGATAAATAGATTCCAGACGAAGGATCAGTTACTTTCCAATTTTCAAACTCAAGGTCAGTTTCCGGATCAAGCAGCAGAAAGGGACCTCTCTGCTGTTAAGAGCATTTTAAATTGTATGACAATTGTTACAGTGACAGGTACAACGATGTACTACTGTTTTTCCTCATTCTGGTTTAAACTTTATGTGTCTCTAGTCTGTGCTTATTTGGTTCCGGCCACATATTTCAATACTCGGCCGCAGCCCATTCTTAGCTTTTTGAAGGTGATAGCAAGGTAG

Coding sequences of Glyma11G12830

Limit To All Plant Sequences

>Glyma11g12830.1   sequence type=CDS   gene model=Glyma11g12830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGTTCTTAAACCAGTAAGTTCTTGCTTTGGAGCAAAGTATCAAGCTCTAGCACCATGGAGAATTTTAAGGGGTCTGGTGTGTCTACTAGTGCTTCTTTCAACAGCATTTATAATGTTAGTGTTCTTTGGTTTTATCAGTGCTGTTATAATGCGACTTTTTAGCGTCATTTACAGCAGGAGAGCAACTTCCTTTTTCTTTGGTGCTTGGCTAGCCTTGTGGCCTTTTCTATTTGAAAAGATCAACAAGACTAAAGTTGTGTTTTCTGGAGATATTGTTCCTTCTAGAGAACGGATCTTATTGATCGCAAATCATAGAACTGAGGTTGATTGGATGTATTTATGGGACCTTGCCTTGCGGAAGGGATGCCTTGGATACATAAAATATATACTTAAGAGTAGCTTGATGAGACTTCCAGTTTTTGGTTGGGCATTTCACATACTAGAGTTCATCCCAGTGGAAAGAAAGTGGGAGGCTGATGAGTCAATCATGCGCTATATGCTTTCAACATTCAAGGATCCACAAGATCCTCTCTGGCTTGCACTTTTCCCAGAAGGCACTGATTTCACTGAGCAAAAGTGCCTTCGGAGTAAAAAATATGCCGCCGAACATGGGTTACCAGTTCTGAAAAATGTTTTACTTCCAAAGACAAAGGGCTTCTGTGCCTGCTTGCAAGAATTGAGGAGCTCTCTCGCTGCAGTTTATGATGTGACCATTGGCTACAAATACCGCTGCCCATCTTTTTTAGATAATGTCTTTGGGGTGGATCCTTCTGAAGTTCATATTCATATCTGCCGCTTTCCCCTTGATAGTATCCCGGTATCTGAAGAGGAAATGTCCATGTGGTTGATAAATAGATTCCAGACGAAGGATCAGTTACTTTCCAATTTTCAAACTCAAGGTCAGTTTCCGGATCAAGCAGCAGAAAGGGACCTCTCTGCTGTTAAGAGCATTTTAAATTGTATGACAATTGTTACAGTGACAGGTACAACGATGTACTACTGTTTTTCCTCATTCTGGTTTAAACTTTATGTGTCTCTAGTCTGTGCTTATTTGGTTCCGGCCACATATTTCAATACTCGGCCGCAGCCCATTCTTAGCTTTTTGAAGGTGATAGCAAGGTAG

>Glyma11g12830.2   sequence type=CDS   gene model=Glyma11g12830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGTTCTTAAACCAGTAAGTTCTTGCTTTGGAGCAAAGTATCAAGCTCTAGCACCATGGAGAATTTTAAGGGGTCTGGTGTGTCTACTAGTGCTTCTTTCAACAGCATTTATAATGTTAGTGTTCTTTGGTTTTATCAGTGCTGTTATAATGCGACTTTTTAGCGTCATTTACAGCAGGAGAGCAACTTCCTTTTTCTTTGGTGCTTGGCTAGCCTTGTGGCCTTTTCTATTTGAAAAGATCAACAAGACTAAAGTTGTGTTTTCTGGAGATATTGTTCCTTCTAGAGAACGGATCTTATTGATCGCAAATCATAGAACTGAGGTTGATTGGATGTATTTATGGGACCTTGCCTTGCGGAAGGGATGCCTTGGATACATAAAATATATACTTAAGAGTAGCTTGATGAGACTTCCAGTTTTTGGTTGGGCATTTCACATACTAGAGTTCATCCCAGTGGAAAGAAAGTGGGAGGCTGATGAGTCAATCATGCGCTATATGCTTTCAACATTCAAGGATCCACAAGATCCTCTCTGGCTTGCACTTTTCCCAGAAGGCACTGATTTCACTGAGCAAAAGTGCCTTCGGAGTAAAAAATATGCCGCCGAACATGGGTTACCAGTTCTGAAAAATGTTTTACTTCCAAAGACAAAGGGCTTCTGTGCCTGCTTGCAAGAATTGAGGAGCTCTCTCGCTGCAGTTTATGATGTGACCATTGGCTACAAATACCGCTGCCCATCTTTTTTAGATAATGTCTTTGGGGTGGATCCTTCTGAAGTTCATATTCATATCTGCCGCTTTCCCCTTGATAGTATCCCGGTATCTGAAGAGGAAATGTCCATGTGGTTGATAAATAGATTCCAGACGAAGGATCAGTTACTTTCCAATTTTCAAACTCAAGGTCAGTTTCCGGATCAAGCAGCAGAAAGGGACCTCTCTGCTGTTAAGAGCATTTTAAATTGTATGACAATTGTTACAGTGACAGGTACAACGATGTACTACTGTTTTTCCTCATTCTGGTTTAAACTTTATGTGTCTCTAGTCTGTGCTTATTTGGTTCCGGCCACATATTTCAATACTCGGCCGCAGCCCATTCTTAGCTTTTTGAAGGTGATAGCAAGGTAG

>Glyma11g12830.3   sequence type=CDS   gene model=Glyma11g12830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTAGTGTTCTTTGGTTTTATCAGTGCTGTTATAATGCGACTTTTTAGCGTCATTTACAGCAGGAGAGCAACTTCCTTTTTCTTTGGTGCTTGGCTAGCCTTGTGGCCTTTTCTATTTGAAAAGATCAACAAGACTAAAGTTGTGTTTTCTGGAGATATTGTTCCTTCTAGAGAACGGATCTTATTGATCGCAAATCATAGAACTGAGGTTGATTGGATGTATTTATGGGACCTTGCCTTGCGGAAGGGATGCCTTGGATACATAAAATATATACTTAAGAGTAGCTTGATGAGACTTCCAGTTTTTGGTTGGGCATTTCACATACTAGAGTTCATCCCAGTGGAAAGAAAGTGGGAGGCTGATGAGTCAATCATGCGCTATATGCTTTCAACATTCAAGGATCCACAAGATCCTCTCTGGCTTGCACTTTTCCCAGAAGGCACTGATTTCACTGAGCAAAAGTGCCTTCGGAGTAAAAAATATGCCGCCGAACATGGGTTACCAGTTCTGAAAAATGTTTTACTTCCAAAGACAAAGGGCTTCTGTGCCTGCTTGCAAGAATTGAGGAGCTCTCTCGCTGCAGTTTATGATGTGACCATTGGCTACAAATACCGCTGCCCATCTTTTTTAGATAATGTCTTTGGGGTGGATCCTTCTGAAGTTCATATTCATATCTGCCGCTTTCCCCTTGATAGTATCCCGGTATCTGAAGAGGAAATGTCCATGTGGTTGATAAATAGATTCCAGACGAAGGATCAGTTACTTTCCAATTTTCAAACTCAAGGTCAGTTTCCGGATCAAGCAGCAGAAAGGGACCTCTCTGCTGTTAAGAGCATTTTAAATTGTATGACAATTGTTACAGTGACAGGTACAACGATGTACTACTGTTTTTCCTCATTCTGGTTTAAACTTTATGTGTCTCTAGTCTGTGCTTATTTGGTTCCGGCCACATATTTCAATACTCGGCCGCAGCCCATTCTTAGCTTTTTGAAGGTGATAGCAAGGTAG

Predicted protein sequences of Glyma11G12830

Limit To All Plant Sequences

>Glyma11g12830.1   sequence type=predicted peptide   gene model=Glyma11g12830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVLKPVSSCFGAKYQALAPWRILRGLVCLLVLLSTAFIMLVFFGFISAVIMRLFSVIYSRRATSFFFGAWLALWPFLFEKINKTKVVFSGDIVPSRERILLIANHRTEVDWMYLWDLALRKGCLGYIKYILKSSLMRLPVFGWAFHILEFIPVERKWEADESIMRYMLSTFKDPQDPLWLALFPEGTDFTEQKCLRSKKYAAEHGLPVLKNVLLPKTKGFCACLQELRSSLAAVYDVTIGYKYRCPSFLDNVFGVDPSEVHIHICRFPLDSIPVSEEEMSMWLINRFQTKDQLLSNFQTQGQFPDQAAERDLSAVKSILNCMTIVTVTGTTMYYCFSSFWFKLYVSLVCAYLVPATYFNTRPQPILSFLKVIAR*

>Glyma11g12830.2   sequence type=predicted peptide   gene model=Glyma11g12830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVLKPVSSCFGAKYQALAPWRILRGLVCLLVLLSTAFIMLVFFGFISAVIMRLFSVIYSRRATSFFFGAWLALWPFLFEKINKTKVVFSGDIVPSRERILLIANHRTEVDWMYLWDLALRKGCLGYIKYILKSSLMRLPVFGWAFHILEFIPVERKWEADESIMRYMLSTFKDPQDPLWLALFPEGTDFTEQKCLRSKKYAAEHGLPVLKNVLLPKTKGFCACLQELRSSLAAVYDVTIGYKYRCPSFLDNVFGVDPSEVHIHICRFPLDSIPVSEEEMSMWLINRFQTKDQLLSNFQTQGQFPDQAAERDLSAVKSILNCMTIVTVTGTTMYYCFSSFWFKLYVSLVCAYLVPATYFNTRPQPILSFLKVIAR*

>Glyma11g12830.3   sequence type=predicted peptide   gene model=Glyma11g12830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLVFFGFISAVIMRLFSVIYSRRATSFFFGAWLALWPFLFEKINKTKVVFSGDIVPSRERILLIANHRTEVDWMYLWDLALRKGCLGYIKYILKSSLMRLPVFGWAFHILEFIPVERKWEADESIMRYMLSTFKDPQDPLWLALFPEGTDFTEQKCLRSKKYAAEHGLPVLKNVLLPKTKGFCACLQELRSSLAAVYDVTIGYKYRCPSFLDNVFGVDPSEVHIHICRFPLDSIPVSEEEMSMWLINRFQTKDQLLSNFQTQGQFPDQAAERDLSAVKSILNCMTIVTVTGTTMYYCFSSFWFKLYVSLVCAYLVPATYFNTRPQPILSFLKVIAR*

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