SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G26570 | AT | Annotation by Michelle Graham. TAIR10: catalytics;carbohydrate kinases;phosphoglucan, water dikinases | chr5:9261580-9267526 FORWARD LENGTH=1196 | SoyBase | E_val: 0 | ISS |
| GO:0000272 | GO-bp | Annotation by Michelle Graham. GO Biological Process: polysaccharide catabolic process | SoyBase | N/A | ISS |
| GO:0005975 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process | SoyBase | N/A | ISS |
| GO:0005982 | GO-bp | Annotation by Michelle Graham. GO Biological Process: starch metabolic process | SoyBase | N/A | ISS |
| GO:0005983 | GO-bp | Annotation by Michelle Graham. GO Biological Process: starch catabolic process | SoyBase | N/A | ISS |
| GO:0009664 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plant-type cell wall organization | SoyBase | N/A | ISS |
| GO:0016310 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phosphorylation | SoyBase | N/A | ISS |
| GO:0019252 | GO-bp | Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process | SoyBase | N/A | ISS |
| GO:0046777 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009536 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plastid | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016301 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: kinase activity | SoyBase | N/A | ISS |
| GO:0019200 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: carbohydrate kinase activity | SoyBase | N/A | ISS |
| GO:0030246 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: carbohydrate binding | SoyBase | N/A | ISS |
| GO:0051752 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphoglucan, water dikinase activity | SoyBase | N/A | ISS |
| GO:2001070 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: starch binding | SoyBase | N/A | ISS |
| PTHR22931 | Panther | PHOSPHOENOLPYRUVATE DIKINASE-RELATED | JGI | ISS | |
| PTHR22931:SF2 | Panther | CHLOROPLAST ALPHA-GLUCAN WATER DIKINASE | JGI | ISS | |
| PF00686 | PFAM | Starch binding domain | JGI | ISS | |
| PF01326 | PFAM | Pyruvate phosphate dikinase, PEP/pyruvate binding domain | JGI | ISS | |
| UniRef100_B9RXZ3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Chloroplast alpha-glucan water dikinase, putative n=1 Tax=Ricinus communis RepID=B9RXZ3_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LFL5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LFL5_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma10g44540 not represented in the dataset |
Glyma10g44540 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g298000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g44540.1 sequence type=CDS gene model=Glyma10g44540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATTCTCTGCGTGTCTATGCGTCTTCCATTCATCTCTGTCCTTCTCGGAACAGACAACATAACCCTAGTAACCATTTCAGATTCCTCCTTCCATCTATCCCTCCCCCTCCGCCTCACCTTCGCCCTCTCCATCTCCGATTGCCTCCGCTTATCTCCGCTGTCTCCTCCTCCCCCCAAACTCAAACTAGGGACGACCAAGACCAAGAACAAGAACAAGAACAAGAACAAGGAAAGAACAAGTCCCTGAAGAACAAAGTTCGTTTGCAAGTTCGATTAGATCACCAGGTTCAATTTGGCGATCACGTTGTCATTCGCGGATCTACCAAAGAATTAGGCTCCTGGACCAACAGTGTGCCCTTGAATTGGACCCAAAATGGATGGGTGTGCGACTTGGAATTTGAACAAGGGCAGGGGACCCTTCACATTGAGTTTAAATTCGTCACCGTCAACAAGGACGACACTTTAGTCTGGGAAGCTGGAGAAAACAGAGTGTTGAAAGTGCCAGGGGCAGGTAATTTTGCCACCGTGGCTACGTGGGACGCCACTCAAGAGACTTTGGAGCTACATTCTTTGGATGATGATGAACAAGTACAAGATGCAGATATTAATGAGTCTGTTTCCGAATCAGAGGCAAGTCCCTTTGTTGGTCAGTGGCAAGGTAAGCCTATTTCATTCATGCGATCCAACGAGCATCGGTCCCATGAAACAGAACGGAAATGGGACACTTCAGGTCTTCAAGGCCTGCCTCTCAAGTTCGTTCAAGCCGATCAAAGCGCAAGGAATTGGTGGAGAAAGCTTGATATCGTGCGTGATATTATAGCTGGAAGTCTGCAAGGGGAAGATCGATTGGAGGCTCTCCTATACTCTGCTATCTATCTCAAGTGGATAAACACAGGGCAAATTTCTTGTTTTGAAGATGGAGGTCACCACCGGCCCAATAGGCATGCTGAGATCTCAAGGCTTATATTTCGTGAACTAGAGCGACACACTAGTCGCAAGGATATATCTCCACAGGAAGTTCTAGTCATTCGTAAGATTCATCCATGTTTGCCATCTTTCAAGGCTGAATTCACTGCATCTGTTCCTCTTACTCGAATTAGAGACATTGCTCATCGGAATGACATCCCACATGACCTAAAGCATACAATACAAAACAAGCTTCACCGAAATGCTGGACCTGAAGATTTGGTTGCTACAGAAGCTATGCTTGCTAGAATCACTAGAAACCCTGCAGAATATAGTGAACCGTTCGTGAAGGAATTCAAGATATTTCATCAAGAACTCAAAGACTTCTTCAATGCTAGCAGTCTTGCTGAACAGCTAGAATCAATTCATGAATCTATGGATAAATATGGCATTTCAGCAATTAGTTCATTCTTGGAGTGCAAAAAGAATATGGATGCTGCAGCAGAATCAACTGCTGCCACAGAAGAAGTAATTGAACTTTTATTTAAAACAATGGAATCTTTAAATGTTTTGAGAGAAACTATTGTAAAGGGACTTGAAAGTGGCCTCAGGAATGATGCTCCAGATTCTGCAATAGCTATGCGTCAAAAGTGGCGCCTCTGTGAGATTGGACTTGAGGATTACTCATTCGTTCTTTTAAGCAGATTTCTCAATGAGTTTGAAGTTATGGGAGGTGCTCATCGGCTGGCTGAAAGCATTCAGTCAAAAAATCTAAACTCATGGAATGATCCACTTGGAGCACTTATTATTGGAGTCCACCAGCTGAAGTTATCTGGTTGGAAGCCAGAAGAATGTGGTGCTATTGAAAATGAGCTCATCACCTGGAGTAAAAGAGGCCTTTCTGAAACGGAAGGAAATGAAGATGGCAAGACTATTTGGACATTGAGACTGAAAGCTACTCTTGATAGATCAAAGAGGCTAACTGATGAATATACTGAAGAACTTCTTAAGATATTCCCTCAGAAAGTCCAGATACTAGGAAAAGCTCTAGGAATACCTGAAAACAGTGTCAGGACATATACAGAAGCTGAGATTCGAGCTGGTGTGATTTTTCAGGTTTCAAAACTATGTACTCTTCTTCTAAAAGCAGTTAGAAACACACTTGGTTCTCAAGGTTGGGATGTTCTTGTTCCAGGAACTGCTTTAGGAAAACTTGTTCAGGTTGAAAAAATTGTTCCTGGTTCACTACCATCATCAGTTGAAGGACCTATTATCCTTGTTGTTAACAAAGCGGATGGTGATGAAGAGGTAACAGCTGCTGGGAGGAACATAGTGGGAGTTATACTTCAGCAAGAGCTGCCTCACTTATCTCATCTCGGTGAAAAGGTCATCTTTGTCACGTGTGAAGATGATGAAAAGGTTGCTGATATACAAAGGCTGATTGGGTCATATGTGAGATTGGAAGCATCAACTGCTGGGGTTAATCTGAAGTTGTCCTCTTCAGTTGACATAGAAGACAATTCTTCCATTAGAAGTTCTTCTGATGACTGTGTCTCTGGAGTTGAGGGTGCTTCTTCTGGAAGAGTTATCTTGCTTCCTGATGCAGAGCTACAGACTTCAGGTGCAAAGGCTGCTGCATGTGGTCACTTATCATCATTGTCTGCAGTTTCTGATAAAGTTCCTTCTGGGGCAGTTTTACCATTTGGATCCATGGAATTGGAGCTAGAGAAGAGCAATTCGACTGAAGCATTCAGGTCTATCCTGGAAAAGATAGAAACAGCCAAGCTGGAGGGTGGTGAACTTGATGTTCTATGCCATCAACTCCAGGAATTAATTTCTTCCCTGAAGCCATCAAAAGACATAATTCAAAGCATTGGGAGAATATTCCCAAGCAATGCACGTTTAATTGTTCGATCCAGTGCCAATGTTGAGGACTTAGCTGGAATGTCAGCAGCTGGACTTTATGAATCAATACCCAACGTTAGTCCTTCCAATCCAACAGTTTTTGGAAATGCAGTTAGCCAAGTATGGGCTTCACTGTACACTCGGAGAGCAGTTTTGAGCCGCCGTGCTGCTGGTGTTCCTCAGAAGGAAGCTTCGATGGCAATACTGATCCAAGAAATGCTTTCACCGGATTTATCATTTGTACTACATACCGTGAGCCCAACAAACCAGGATAATAATTGTGTGGAGGCTGAAATTGCTTCTGGCCTTGGTGAAACTCTAGCTTCTGGAACCCGGGGTACACCATGGCGTATATCATCTGGGAAATTTGACGGGCAAGTGCAAACATTGGCTTTTGCAAACTTCAGTGAGGAATTGCTGGTACGAGGTGCAGGGCCTGCAGATGGGGAGGTTATCCGTTTGACTGTTGATTACAGCAAGAAACCACTGACAGTTGACTCAGTTTTCCGTGGACAACTTGGTCAACGTCTTTGTGCAGTTGGGTTTTTCCTGGAGAGAAAGTTTGGTTGCCCACAGGATGTGGAAGGATGTCTTGTTGGAAAAGACATCTTTATCGTACAGACAAGGCCCCAACCCCTGTAG
>Glyma10g44540.1 sequence type=predicted peptide gene model=Glyma10g44540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDSLRVYASSIHLCPSRNRQHNPSNHFRFLLPSIPPPPPHLRPLHLRLPPLISAVSSSPQTQTRDDQDQEQEQEQEQGKNKSLKNKVRLQVRLDHQVQFGDHVVIRGSTKELGSWTNSVPLNWTQNGWVCDLEFEQGQGTLHIEFKFVTVNKDDTLVWEAGENRVLKVPGAGNFATVATWDATQETLELHSLDDDEQVQDADINESVSESEASPFVGQWQGKPISFMRSNEHRSHETERKWDTSGLQGLPLKFVQADQSARNWWRKLDIVRDIIAGSLQGEDRLEALLYSAIYLKWINTGQISCFEDGGHHRPNRHAEISRLIFRELERHTSRKDISPQEVLVIRKIHPCLPSFKAEFTASVPLTRIRDIAHRNDIPHDLKHTIQNKLHRNAGPEDLVATEAMLARITRNPAEYSEPFVKEFKIFHQELKDFFNASSLAEQLESIHESMDKYGISAISSFLECKKNMDAAAESTAATEEVIELLFKTMESLNVLRETIVKGLESGLRNDAPDSAIAMRQKWRLCEIGLEDYSFVLLSRFLNEFEVMGGAHRLAESIQSKNLNSWNDPLGALIIGVHQLKLSGWKPEECGAIENELITWSKRGLSETEGNEDGKTIWTLRLKATLDRSKRLTDEYTEELLKIFPQKVQILGKALGIPENSVRTYTEAEIRAGVIFQVSKLCTLLLKAVRNTLGSQGWDVLVPGTALGKLVQVEKIVPGSLPSSVEGPIILVVNKADGDEEVTAAGRNIVGVILQQELPHLSHLGEKVIFVTCEDDEKVADIQRLIGSYVRLEASTAGVNLKLSSSVDIEDNSSIRSSSDDCVSGVEGASSGRVILLPDAELQTSGAKAAACGHLSSLSAVSDKVPSGAVLPFGSMELELEKSNSTEAFRSILEKIETAKLEGGELDVLCHQLQELISSLKPSKDIIQSIGRIFPSNARLIVRSSANVEDLAGMSAAGLYESIPNVSPSNPTVFGNAVSQVWASLYTRRAVLSRRAAGVPQKEASMAILIQEMLSPDLSFVLHTVSPTNQDNNCVEAEIASGLGETLASGTRGTPWRISSGKFDGQVQTLAFANFSEELLVRGAGPADGEVIRLTVDYSKKPLTVDSVFRGQLGQRLCAVGFFLERKFGCPQDVEGCLVGKDIFIVQTRPQPL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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