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Report for Sequence Feature Glyma10g44530

Feature Type:gene_model
Chromosome:Gm10
Start:50856030
stop:50856606
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma10g44530
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G79630AT Annotation by Michelle Graham. TAIR10: Protein phosphatase 2C family protein | chr1:29962931-29964382 REVERSE LENGTH=394 SoyBaseE_val: 7.00E-66ISS
GO:0006499GO-bp Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0004722GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine phosphatase activity SoyBaseN/AISS
PTHR13832Panther PROTEIN PHOSPHATASE 2C JGI ISS
PTHR13832:SF94Panther PROTEIN PHOSPHATASE 2C DELTA JGI ISS
PF00481PFAM Protein phosphatase 2C JGI ISS
UniRef100_G7KTS5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Protein phosphatase 2c n=1 Tax=Medicago truncatula RepID=G7KTS5_MEDTR SoyBaseE_val: 3.00E-64ISS
UniRef100_I1LFL4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1LFL4_SOYBN SoyBaseE_val: 5.00E-115ISS

Expression Patterns of Glyma10g44530
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g44530 not represented in the dataset
Glyma10g44530 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma10g44530 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g297900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma10g44530
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma10g44530
>Glyma10g44530.1   sequence type=CDS   gene model=Glyma10g44530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GACGGGGGCACGGGTGTGACGTTGCTGAAGCAGGGACAGGACCTTGTTATTGTGAATGTAGATGACTCCAGAGCTGTATTAGCTGCCCAAGATCGTAGCAATGGTTCTCTTATTGCTGTCCAGTTGAGCACTGACCACAAGCCACATCTTCCAAGGGAAGCAGAGAGGATAAGGATTTGTAAAGGAAGGGTCTTCGCCATTAAGAACGAACCAGGGATTGCTCGAGTATGGCTCCCCAACATTGATTCCCCTGGCCTTGCCATGTCACGTGCTTTTGGAGATTTTTGTCTCAAGGACTTTGGAGTCATCTCTGCTCCTGATTTCTCATATCACCGCCTCACTCAAAGGGATCAATTTGTTGTCTTAGCCACAGATGGGGTATGTGATGTTTTATCAAACGAAGATGCTGTGACCATTGTGGCATCTGCTCCACGCTACTTAGACTCCAACCTCAACAAAACCACCAATAGCCTCCTCCTCCTCACTTCACTAATTTGA
Predicted protein sequences of Glyma10g44530
>Glyma10g44530.1   sequence type=predicted peptide   gene model=Glyma10g44530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
DGGTGVTLLKQGQDLVIVNVDDSRAVLAAQDRSNGSLIAVQLSTDHKPHLPREAERIRICKGRVFAIKNEPGIARVWLPNIDSPGLAMSRAFGDFCLKDFGVISAPDFSYHRLTQRDQFVVLATDGVCDVLSNEDAVTIVASAPRYLDSNLNKTTNSLLLLTSLI*






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