Glyma10g44270 - SoyBase

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Report for Sequence Feature Glyma10g44270

Feature Type:	gene_model
Chromosome:	Gm10
Start:	50709299
stop:	50717690
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g44270

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G12250	AT	Annotation by Michelle Graham. TAIR10: TGACG motif-binding factor 6 \| chr3:3906351-3908583 FORWARD LENGTH=330	SoyBase	E_val: 0	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009410	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to xenobiotic stimulus	SoyBase	N/A	ISS
GO:0009617	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to bacterium	SoyBase	N/A	ISS
GO:0009627	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance	SoyBase	N/A	ISS
GO:0009862	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0030968	GO-bp	Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
PTHR22952	Panther	CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED	JGI		ISS
PTHR22952:SF53	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00170	PFAM	bZIP transcription factor	JGI		ISS
UniRef100_I1NJB9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NJB9_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q93XA1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: TGA-type basic leucine zipper protein TGA2.1 n=1 Tax=Phaseolus vulgaris RepID=Q93XA1_PHAVU	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g44270

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g44270 not represented in the dataset	Glyma10g44270 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g44270

Paralog	Evidence	Comments
Glyma20g39050	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g44270 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g296200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g44270

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g44270

Limit To All Plant Sequences

>Glyma10g44270.3   sequence type=transcript   gene model=Glyma10g44270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CATGTCAAAGCACTGGAACATTAAAAAATAAAAATGAAAAAAAATGAAAAGCCATTAGCTCTCTCTCGGAAGCAGAACAAAACAAGACGTCTAGAAATTGGATTGATCCTTTCTCTCTCTCTTTCTTCCCAACTCAACTCAAGTCCTCTTCCTTTCACTTTAATCCAACAATAATAATTATTCGCAAAAAAAAAAAAAACACGTTGAACAGATACCATCATCATTCATCTTCATCCCCACATCATCAGAATTTCAAGACTCAGTTTTTGACTCACTAAGTAAGTAGCCAAACAATTTCTCGGGTTCCTGTTCAAGTTGATTCCTTTGATAAGTTACCAACTTCACTCGATAAAAACCCATTAACAAACCAAACAGAGTGACAAAGTTTGCAATTACAAAAGGTTCAATTATCAAATCTGGTCAGTGGTGATACGGAACACCAGGAAGAGTCTGCCATGGCTGACGCCAGTCCTAGAACTGATATTTCTACAGATGTTGACACGGATGATAAGAATCCACGGTTTGATAGAAGTCAGTCCCTTGTTGCTGTGGCTTCTGACTCCAGTGACAGATCAAAGGATAAATCAGATCAGAAGAGTCTCCGGAGGCTTGCTCAGAATCGCGAGGCTGCAAGAAAAAGTCGGTTGAGAAAGAAAGCTTATGTTCAACAGCTCGAAAGTAGTCGCTTAAAGTTGACCCAACTGGAGCAAGAGCTTCAGAGAGCTAGGCAGCAGGGAATCTTTATATCAAACTCAGGTGATCAAGCACATTCAATGAGTGGAAATGGGGCTATGGCATTTGATGTAGAATATGCAAGGTGGCTGGAAGAGCAGAATCGACAAATTAATGAGCTAAGAGCAGGTGTAAATTCTCATGCAGGTGATACAGAACTTCGCATGATTATCGATGGTATAATGGCACATTATGATGAGATATTTAGGCTGAAGGCCAATGCAGCTAAGGCTGATGTCTTCCATTTGCTGTCTGGAATGTGGAAGACACCAGCAGAGAGGTGTTTTCTATGGCTTGGTGGTTTTCGGTCATCTGAACTCCTCAAGCTCCTGGTAAATCAGTTGGAACCTCTGACGGAGCAACAGTTAGTGGGTATCACCAACTTGCAGCAATCTTCCCAACAAGCAGAAGATGCTTTGTCTCAGGGCATGGAAGCATTGCAACAGTCCCTTTCTGAGACATTATCCACTGGATCACTTGGCTCCTCTGGTTCATCAGGCAATGTGGCAAATTACATGGGTCAAATGGCTATGGCCATGGGTAAACTAGGGACACTTGAGGGATTCATTAAGCAGGCTGACAACTTGCGCCAGCAGACGTTGCATCAAATTCACCGCATATTGACAACTCGGCAGTCGGCTCGTGCACTACTTGCAATACATGACTACTTTTCTAGGTTGCGTGCCCTTAGCTCTCTTTGGCTTGCCCGCCCAAGAGACTGATGGGGGTAAATAGTGTGTCATTAATTTTCATGGATCTGGCACCAGAATCCTTTGGCATAGGTTTTTTACTCTTGCAATTTTACTGTGTTGTAGTTTTCACATTACTGATATTAGTTTCAGTAAGTTATTATCTAGAAACTGAATTGGTGACATGACAAGGGTATGTATTTTGTTTATTACTACTAACGTAATAATATTGTCTATTGTAACACAGTTGAAGGAATTTAGATGATTTTATACAAAAAATGGTTGGGATGTGATAAATTTGAATGTTTTGTTCTGTTGCTAGAAAATTTCCATCTATCTGAATTTGTATAACTTGGACAAAATGTATTTTTAATTCTTATATTCTCGGTCAAATGTGATCAAGGTTTCTATATTTTCATATTGA

>Glyma10g44270.4   sequence type=transcript   gene model=Glyma10g44270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CATGTCAAAGCACTGGAACATTAAAAAATAAAAATGAAAAAAAATGAAAAGCCATTAGCTCTCTCTCGGAAGCAGAACAAAACAAGACGTCTAGAAATTGGATTGATCCTTTCTCTCTCTCTTTCTTCCCAACTCAACTCAAGTCCTCTTCCTTTCACTTTAATCCAACAATAATAATTATTCGCAAAAAAAAAAAAAACACGTTGAACAGATACCATCATCATTCATCTTCATCCCCACATCATCAGAATTTCAAGACTCAGTTTTTGACTCACTAAGTAAGTAGCCAAACAATTTCTCGGGTTCCTGTTCAAGTTGATTCCTTTGATAAGGTTCAATTATCAAATCTGGTCAGTGGTGATACGGAACACCAGGAAGAGTCTGCCATGGCTGACGCCAGTCCTAGAACTGATATTTCTACAGATGTTGACACGGATGATAAGAATCCACGGTTTGATAGAAGTCAGTCCCTTGTTGCTGTGGCTTCTGACTCCAGTGACAGATCAAAGGATAAATCAGATCAGAAGAGTCTCCGGAGGCTTGCTCAGAATCGCGAGGCTGCAAGAAAAAGTCGGTTGAGAAAGAAAGCTTATGTTCAACAGCTCGAAAGTAGTCGCTTAAAGTTGACCCAACTGGAGCAAGAGCTTCAGAGAGCTAGGCAGCAGGGAATCTTTATATCAAACTCAGGTGATCAAGCACATTCAATGAGTGGAAATGGGGCTATGGCATTTGATGTAGAATATGCAAGGTGGCTGGAAGAGCAGAATCGACAAATTAATGAGCTAAGAGCAGGTGTAAATTCTCATGCAGGTGATACAGAACTTCGCATGATTATCGATGGTATAATGGCACATTATGATGAGATATTTAGGCTGAAGGCCAATGCAGCTAAGGCTGATGTCTTCCATTTGCTGTCTGGAATGTGGAAGACACCAGCAGAGAGGTGTTTTCTATGGCTTGGTGGTTTTCGGTCATCTGAACTCCTCAAGCTCCTGGTAAATCAGTTGGAACCTCTGACGGAGCAACAGTTAGTGGGTATCACCAACTTGCAGCAATCTTCCCAACAAGCAGAAGATGCTTTGTCTCAGGGCATGGAAGCATTGCAACAGTCCCTTTCTGAGACATTATCCACTGGATCACTTGGCTCCTCTGGTTCATCAGGCAATGTGGCAAATTACATGGGTCAAATGGCTATGGCCATGGGTAAACTAGGGACACTTGAGGGATTCATTAAGCAGGCTGACAACTTGCGCCAGCAGACGTTGCATCAAATTCACCGCATATTGACAACTCGGCAGTCGGCTCGTGCACTACTTGCAATACATGACTACTTTTCTAGGTTGCGTGCCCTTAGCTCTCTTTGGCTTGCCCGCCCAAGAGACTGATGGGGGTAAATAGTGTGTCATTAATTTTCATGGATCTGGCACCAGAATCCTTTGGCATAGGTTTTTTACTCTTGCAATTTTACTGTGTTGTAGTTTTCACATTACTGATATTAGTTTCAGTAAGTTATTATCTAGAAACTGAATTGGTGACATGACAAGGGTATGTATTTTGTTTATTACTACTAACGTAATAATATTGTCTATTGTAACACAGTTGAAGGAATTTAGATGATTTTATACAAAAAATGGTTGGGATGTGATAAATTTGAATGTTTTGTTCTGTTGCTAGAAAATTTCCATCTATCTGAATTTGTATAACTTGGACAAAATGTATTTTTAATTCTTATATTCTCGGTCAAATGTGATCAAGGTTTCTATATTTTCATATTGA

Coding sequences of Glyma10g44270

Limit To All Plant Sequences

>Glyma10g44270.2   sequence type=CDS   gene model=Glyma10g44270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAAATAGAGCCGGTGTTTGTGTAGAAGATGAGAAGGGAACAGCAAGAGGGATGCCGAGCTTCAATTCACAATTGCCCAATTCCGATGCGTGCTATACAGAGGGAAGCACAATTGATTCTATTTGTGTGTCTGACTTTGATCAATCAGTTGGATATCGCATAGAGGATGTTGTTGCCTTGAGGGGAATAAGTAGCCAAACAATTTCTCGGGTTCCTGTTCAAGTTGATTCCTTTGATAAGGTTCAATTATCAAATCTGGTCAGTGGTGATACGGAACACCAGGAAGAGTCTGCCATGGCTGACGCCAGTCCTAGAACTGATATTTCTACAGATGTTGACACGGATGATAAGAATCCACGGTTTGATAGAAGTCAGTCCCTTGTTGCTGTGGCTTCTGACTCCAGTGACAGATCAAAGGATAAATCAGATCAGAAGAGTCTCCGGAGGCTTGCTCAGAATCGCGAGGCTGCAAGAAAAAGTCGGTTGAGAAAGAAAGCTTATGTTCAACAGCTCGAAAGTAGTCGCTTAAAGTTGACCCAACTGGAGCAAGAGCTTCAGAGAGCTAGGCAGCAGGGAATCTTTATATCAAACTCAGGTGATCAAGCACATTCAATGAGTGGAAATGGGGCTATGGCATTTGATGTAGAATATGCAAGGTGGCTGGAAGAGCAGAATCGACAAATTAATGAGCTAAGAGCAGGTGTAAATTCTCATGCAGGTGATACAGAACTTCGCATGATTATCGATGGTATAATGGCACATTATGATGAGATATTTAGGCTGAAGGCCAATGCAGCTAAGGCTGATGTCTTCCATTTGCTGTCTGGAATGTGGAAGACACCAGCAGAGAGGTGTTTTCTATGGCTTGGTGGTTTTCGGTCATCTGAACTCCTCAAGCTCCTGGTAAATCAGTTGGAACCTCTGACGGAGCAACAGTTAGTGGGTATCACCAACTTGCAGCAATCTTCCCAACAAGCAGAAGATGCTTTGTCTCAGGGCATGGAAGCATTGCAACAGTCCCTTTCTGAGACATTATCCACTGGATCACTTGGCTCCTCTGGTTCATCAGGCAATGTGGCAAATTACATGGGTCAAATGGCTATGGCCATGGGTAAACTAGGGACACTTGAGGGATTCATTAAGCAGGCTGACAACTTGCGCCAGCAGACGTTGCATCAAATTCACCGCATATTGACAACTCGGCAGTCGGCTCGTGCACTACTTGCAATACATGACTACTTTTCTAGGTTGCGTGCCCTTAGCTCTCTTTGGCTTGCCCGCCCAAGAGACTGA

>Glyma10g44270.3   sequence type=CDS   gene model=Glyma10g44270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGACGCCAGTCCTAGAACTGATATTTCTACAGATGTTGACACGGATGATAAGAATCCACGGTTTGATAGAAGTCAGTCCCTTGTTGCTGTGGCTTCTGACTCCAGTGACAGATCAAAGGATAAATCAGATCAGAAGAGTCTCCGGAGGCTTGCTCAGAATCGCGAGGCTGCAAGAAAAAGTCGGTTGAGAAAGAAAGCTTATGTTCAACAGCTCGAAAGTAGTCGCTTAAAGTTGACCCAACTGGAGCAAGAGCTTCAGAGAGCTAGGCAGCAGGGAATCTTTATATCAAACTCAGGTGATCAAGCACATTCAATGAGTGGAAATGGGGCTATGGCATTTGATGTAGAATATGCAAGGTGGCTGGAAGAGCAGAATCGACAAATTAATGAGCTAAGAGCAGGTGTAAATTCTCATGCAGGTGATACAGAACTTCGCATGATTATCGATGGTATAATGGCACATTATGATGAGATATTTAGGCTGAAGGCCAATGCAGCTAAGGCTGATGTCTTCCATTTGCTGTCTGGAATGTGGAAGACACCAGCAGAGAGGTGTTTTCTATGGCTTGGTGGTTTTCGGTCATCTGAACTCCTCAAGCTCCTGGTAAATCAGTTGGAACCTCTGACGGAGCAACAGTTAGTGGGTATCACCAACTTGCAGCAATCTTCCCAACAAGCAGAAGATGCTTTGTCTCAGGGCATGGAAGCATTGCAACAGTCCCTTTCTGAGACATTATCCACTGGATCACTTGGCTCCTCTGGTTCATCAGGCAATGTGGCAAATTACATGGGTCAAATGGCTATGGCCATGGGTAAACTAGGGACACTTGAGGGATTCATTAAGCAGGCTGACAACTTGCGCCAGCAGACGTTGCATCAAATTCACCGCATATTGACAACTCGGCAGTCGGCTCGTGCACTACTTGCAATACATGACTACTTTTCTAGGTTGCGTGCCCTTAGCTCTCTTTGGCTTGCCCGCCCAAGAGACTGA

>Glyma10g44270.4   sequence type=CDS   gene model=Glyma10g44270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGACGCCAGTCCTAGAACTGATATTTCTACAGATGTTGACACGGATGATAAGAATCCACGGTTTGATAGAAGTCAGTCCCTTGTTGCTGTGGCTTCTGACTCCAGTGACAGATCAAAGGATAAATCAGATCAGAAGAGTCTCCGGAGGCTTGCTCAGAATCGCGAGGCTGCAAGAAAAAGTCGGTTGAGAAAGAAAGCTTATGTTCAACAGCTCGAAAGTAGTCGCTTAAAGTTGACCCAACTGGAGCAAGAGCTTCAGAGAGCTAGGCAGCAGGGAATCTTTATATCAAACTCAGGTGATCAAGCACATTCAATGAGTGGAAATGGGGCTATGGCATTTGATGTAGAATATGCAAGGTGGCTGGAAGAGCAGAATCGACAAATTAATGAGCTAAGAGCAGGTGTAAATTCTCATGCAGGTGATACAGAACTTCGCATGATTATCGATGGTATAATGGCACATTATGATGAGATATTTAGGCTGAAGGCCAATGCAGCTAAGGCTGATGTCTTCCATTTGCTGTCTGGAATGTGGAAGACACCAGCAGAGAGGTGTTTTCTATGGCTTGGTGGTTTTCGGTCATCTGAACTCCTCAAGCTCCTGGTAAATCAGTTGGAACCTCTGACGGAGCAACAGTTAGTGGGTATCACCAACTTGCAGCAATCTTCCCAACAAGCAGAAGATGCTTTGTCTCAGGGCATGGAAGCATTGCAACAGTCCCTTTCTGAGACATTATCCACTGGATCACTTGGCTCCTCTGGTTCATCAGGCAATGTGGCAAATTACATGGGTCAAATGGCTATGGCCATGGGTAAACTAGGGACACTTGAGGGATTCATTAAGCAGGCTGACAACTTGCGCCAGCAGACGTTGCATCAAATTCACCGCATATTGACAACTCGGCAGTCGGCTCGTGCACTACTTGCAATACATGACTACTTTTCTAGGTTGCGTGCCCTTAGCTCTCTTTGGCTTGCCCGCCCAAGAGACTGA

Predicted protein sequences of Glyma10g44270

Limit To All Plant Sequences

>Glyma10g44270.2   sequence type=predicted peptide   gene model=Glyma10g44270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSNRAGVCVEDEKGTARGMPSFNSQLPNSDACYTEGSTIDSICVSDFDQSVGYRIEDVVALRGISSQTISRVPVQVDSFDKVQLSNLVSGDTEHQEESAMADASPRTDISTDVDTDDKNPRFDRSQSLVAVASDSSDRSKDKSDQKSLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISNSGDQAHSMSGNGAMAFDVEYARWLEEQNRQINELRAGVNSHAGDTELRMIIDGIMAHYDEIFRLKANAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQLVGITNLQQSSQQAEDALSQGMEALQQSLSETLSTGSLGSSGSSGNVANYMGQMAMAMGKLGTLEGFIKQADNLRQQTLHQIHRILTTRQSARALLAIHDYFSRLRALSSLWLARPRD*

>Glyma10g44270.3   sequence type=predicted peptide   gene model=Glyma10g44270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADASPRTDISTDVDTDDKNPRFDRSQSLVAVASDSSDRSKDKSDQKSLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISNSGDQAHSMSGNGAMAFDVEYARWLEEQNRQINELRAGVNSHAGDTELRMIIDGIMAHYDEIFRLKANAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQLVGITNLQQSSQQAEDALSQGMEALQQSLSETLSTGSLGSSGSSGNVANYMGQMAMAMGKLGTLEGFIKQADNLRQQTLHQIHRILTTRQSARALLAIHDYFSRLRALSSLWLARPRD*

>Glyma10g44270.4   sequence type=predicted peptide   gene model=Glyma10g44270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADASPRTDISTDVDTDDKNPRFDRSQSLVAVASDSSDRSKDKSDQKSLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISNSGDQAHSMSGNGAMAFDVEYARWLEEQNRQINELRAGVNSHAGDTELRMIIDGIMAHYDEIFRLKANAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQLVGITNLQQSSQQAEDALSQGMEALQQSLSETLSTGSLGSSGSSGNVANYMGQMAMAMGKLGTLEGFIKQADNLRQQTLHQIHRILTTRQSARALLAIHDYFSRLRALSSLWLARPRD*

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