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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G59360 | AT | Annotation by Michelle Graham. TAIR10: UDP-galactose transporter 6 | chr3:21935826-21939642 REVERSE LENGTH=405 | SoyBase | E_val: 0 | ISS |
| GO:0008643 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carbohydrate transport | SoyBase | N/A | ISS |
| GO:0015780 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleotide-sugar transport | SoyBase | N/A | ISS |
| GO:0055085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transmembrane transport | SoyBase | N/A | ISS |
| GO:0000139 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi membrane | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0005338 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide-sugar transmembrane transporter activity | SoyBase | N/A | ISS |
| GO:0005351 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sugar:hydrogen symporter activity | SoyBase | N/A | ISS |
| KOG2234 | KOG | Predicted UDP-galactose transporter | JGI | ISS | |
| PTHR10231 | Panther | SUGAR TRANSPORTER | JGI | ISS | |
| PTHR10231:SF6 | Panther | CMP-SIALIC ACID TRANSPORTER-RELATED | JGI | ISS | |
| PF04142 | PFAM | Nucleotide-sugar transporter | JGI | ISS | |
| UniRef100_G7IB00 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: UDP-galactose transporter n=1 Tax=Medicago truncatula RepID=G7IB00_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LFJ5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LFJ5_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma10g44250 not represented in the dataset |
Glyma10g44250 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma20g39020 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g296000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g44250.4 sequence type=transcript gene model=Glyma10g44250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTAAGATTTGCTTTCCATAAGTCTATTATTCTTGAAGACCTAAGCTTATTGAATAAATATTGGTGGAAGCACACAGCACACAGCACAAGCCTGAAAGTTGAAGCGAAAGAAACGTCTAACCCGAATGGTGTAATAATATGGAGAGGGGGTAATTCCACCCAACAGAAGCAGCGACACTGACACACCAAACTACAAATCTGAAATCCCCCTTTGACTCCTCTCACTTTGAGACGCCTCATTCCCAACTTTCCTCCCAAACACCCTTTTATTTTTTTTTGTGAGTGATTTCAAAGCAAACAAATAAAAAACCATTTAACGCTCTCTCTTATTATTCCAATTTCCAAATCACAAAACAAAAATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGAATTTATACTCCAATTTCCATTTCCATCGATAGGAAGAAGGAACATAGCTGACTGAATTCGGAATCTGAATCGTACTCGCCTTGTCTTTGTTATTCGCACTCCTCGCACTTCGAATCCGTTGCTGGCAGCTGCAGATCAAACCTTGTTTCACCTGAATGCTCCTTCTGGACTCGATTTAGATCGAGTTCTTCGTACCCTGATAGTGTGGGAGGATATATATGAAAAACGGGGTGATGGAATGCAGTGTTTGCCATTCCAAATTGGTTTCCCCCTCCTCCAAGACTATATCAAGGGCTTATGATCGCCATAAAAGTAGGATATCGTCCAAGCAACGTGCTCTCAATGTCTTTTTGGTCGTTGGTGATTGTGTTCTAGTTGGCTTCCAGCCTATCCTTGTCTATATGTCCAAGGTGGATGGGAAATTCAATTTTAGCCCAATTAGTGTTAATTTTTTGACTGAGATTACAAAGGTTTTCTTTGCTATTGTTATGCTTCTTCTCCAGGCTAGGCATCAAAAAGTTGGGGAGAAGCCTCTTCTCTCAATTTCTACATTCATGCAGGCTGCTCGTAACAATGTCCTTCTGGCAGTTCCTGCACTTCTGTATGCCATAAACAACTATCTGAAGTTTATTATGCAGCTGTATTTTAATCCTGCTACTGTAAAGATGTTAAGCAATTTGAAGGTTTTAGTAATAGCACTTTTGTTAAAGGTGATTATGAAGCGCCGGTTTTCCATCATTCAGTGGGAAGCTCTTGCTCTACTGCTTATTGGTATAAGTGTTAATCAGCTAAGATCTTTACCAGAAGGAACTACTGCTTTGGGTCTTCCTGTCACAATGGGTGCATATGCCTATACATTGATCTTTGTCACTGTTCCATCATTGGCCTCTGTTTATAATGAGTATGCTTTGAAGAGCCAATATGATACAAGCATTTATCTGCAGAACTTATTCTTATATGGATATGGAGCTATATTCAATTTTCTTGGGATACTTGGGACTGTTGTTGTCAAAGGGCCTAGCAGCTTTGATATCCTACAAGGTCATTCAAAAGCCACAATGCTTTTGATAGCAAACAATGCTGCCCAAGGGATTTTATCCTCTTTCTTCTTCAAATATGCAGATACAATTTTGAAGAAGTACTCATCAACAGTAGCAACAATCTTCACCGGTATAGCATCTGCTGTACTATTTGGACATACTTTAACAATGAACTTCGTTATTGGCATTTCTATTGTGTTTATCTCAATGCACCAATTCTTTTCGCCACTTTCAAAAGTTAAAGATGAACAAAATGGTGTGCTGGAACTGCATGATGTTCATGACAAACAAAGGTCAAAGGAATCCTTTATAAATATGGCAGCTGGAGCAAATGAGGAGGCCACTCATCGAGTTGGACATGATGAGAGACAGCCACTTCTTCCCTCCTAGATTGGTCTACTGCATGAAACTTGACTTCGGGAACTGGTGAACAAGCCATGACTTTCAGTTGCTGAAGATTTTGATAGAGCTTAGAGAATGGCTCCGCAAGAGCTTTTGGCATATCAATGTGGATTTTACTTGTACTACATTTATTTTTTTTTATCTTGGACATTTTATTTCTCTTTTTTAATTTTGTTTCATGGTATATTTACCTCATCCTGGTCTAGAACTATTGTGTTATTATTTACATTTATTACATGATTTTGTCATTTCGTCATTATGAAATTATACAGGTAAATAAAGAAATTGAGTTCCCTTGTAGAAAATTATATTTGCGTGCATATAAAGCAATAGGAAATGATATTTACATATGTTGTTTTGTGTCA
>Glyma10g44250.3 sequence type=CDS gene model=Glyma10g44250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAAAACGGGGTGATGGAATGCAGTGTTTGCCATTCCAAATTGGTTTCCCCCTCCTCCAAGACTATATCAAGGGCTTATGATCGCCATAAAAGTAGGATATCGTCCAAGCAACGTGCTCTCAATGTCTTTTTGGTCGTTGGTGATTGTGTTCTAGTTGGCTTCCAGCCTATCCTTGTCTATATGTCCAAGGTGGATGGGAAATTCAATTTTAGCCCAATTAGTGTTAATTTTTTGACTGAGATTACAAAGGTTTTCTTTGCTATTGTTATGCTTCTTCTCCAGGCTAGGCATCAAAAAGTTGGGGAGAAGCCTCTTCTCTCAATTTCTACATTCATGCAGGCTGCTCGTAACAATGTCCTTCTGGCAGTTCCTGCACTTCTGTATGCCATAAACAACTATCTGAAGTTTATTATGCAGCTGTATTTTAATCCTGCTACTGTAAAGATGTTAAGCAATTTGAAGGTTTTAGTAATAGCACTTTTGTTAAAGGTGATTATGAAGCGCCGGTTTTCCATCATTCAGTGGGAAGCTCTTGCTCTACTGCTTATTGGTATAAGTGTTAATCAGCTAAGATCTTTACCAGAAGGAACTACTGCTTTGGGTCTTCCTGTCACAATGGGTGCATATGCCTATACATTGATCTTTGTCACTGTTCCATCATTGGCCTCTGTTTATAATGAGTATGCTTTGAAGAGCCAATATGATACAAGCATTTATCTGCAGAACTTATTCTTATATGGATATGGAGCTATATTCAATTTTCTTGGGATACTTGGGACTGTTGTTGTCAAAGGGCCTAGCAGCTTTGATATCCTACAAGGTCATTCAAAAGCCACAATGCTTTTGATAGCAAACAATGCTGCCCAAGGGATTTTATCCTCTTTCTTCTTCAAATATGCAGATACAATTTTGAAGAAGTACTCATCAACAGTAGCAACAATCTTCACCGGTATAGCATCTGCTGTACTATTTGGACATACTTTAACAATGAACTTCGTTATTGGCATTTCTATTGTGTTTATCTCAATGCACCAATTCTTTTCGCCACTTTCAAAAGTTAAAGATGAACAAAATGGTGTGCTGGAACTGCATGATGTTCATGACAAACAAAGGTCAAAGGAATCCTTTATAAATATGGCAGCTGGAGCAAATGAGGAGGCCACTCATCGAGTTGGACATGATGAGAGACAGCCACTTCTTCCCTCCTAG >Glyma10g44250.4 sequence type=CDS gene model=Glyma10g44250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAAAACGGGGTGATGGAATGCAGTGTTTGCCATTCCAAATTGGTTTCCCCCTCCTCCAAGACTATATCAAGGGCTTATGATCGCCATAAAAGTAGGATATCGTCCAAGCAACGTGCTCTCAATGTCTTTTTGGTCGTTGGTGATTGTGTTCTAGTTGGCTTCCAGCCTATCCTTGTCTATATGTCCAAGGTGGATGGGAAATTCAATTTTAGCCCAATTAGTGTTAATTTTTTGACTGAGATTACAAAGGTTTTCTTTGCTATTGTTATGCTTCTTCTCCAGGCTAGGCATCAAAAAGTTGGGGAGAAGCCTCTTCTCTCAATTTCTACATTCATGCAGGCTGCTCGTAACAATGTCCTTCTGGCAGTTCCTGCACTTCTGTATGCCATAAACAACTATCTGAAGTTTATTATGCAGCTGTATTTTAATCCTGCTACTGTAAAGATGTTAAGCAATTTGAAGGTTTTAGTAATAGCACTTTTGTTAAAGGTGATTATGAAGCGCCGGTTTTCCATCATTCAGTGGGAAGCTCTTGCTCTACTGCTTATTGGTATAAGTGTTAATCAGCTAAGATCTTTACCAGAAGGAACTACTGCTTTGGGTCTTCCTGTCACAATGGGTGCATATGCCTATACATTGATCTTTGTCACTGTTCCATCATTGGCCTCTGTTTATAATGAGTATGCTTTGAAGAGCCAATATGATACAAGCATTTATCTGCAGAACTTATTCTTATATGGATATGGAGCTATATTCAATTTTCTTGGGATACTTGGGACTGTTGTTGTCAAAGGGCCTAGCAGCTTTGATATCCTACAAGGTCATTCAAAAGCCACAATGCTTTTGATAGCAAACAATGCTGCCCAAGGGATTTTATCCTCTTTCTTCTTCAAATATGCAGATACAATTTTGAAGAAGTACTCATCAACAGTAGCAACAATCTTCACCGGTATAGCATCTGCTGTACTATTTGGACATACTTTAACAATGAACTTCGTTATTGGCATTTCTATTGTGTTTATCTCAATGCACCAATTCTTTTCGCCACTTTCAAAAGTTAAAGATGAACAAAATGGTGTGCTGGAACTGCATGATGTTCATGACAAACAAAGGTCAAAGGAATCCTTTATAAATATGGCAGCTGGAGCAAATGAGGAGGCCACTCATCGAGTTGGACATGATGAGAGACAGCCACTTCTTCCCTCCTAG
>Glyma10g44250.3 sequence type=predicted peptide gene model=Glyma10g44250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKNGVMECSVCHSKLVSPSSKTISRAYDRHKSRISSKQRALNVFLVVGDCVLVGFQPILVYMSKVDGKFNFSPISVNFLTEITKVFFAIVMLLLQARHQKVGEKPLLSISTFMQAARNNVLLAVPALLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIALLLKVIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTTALGLPVTMGAYAYTLIFVTVPSLASVYNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILGTVVVKGPSSFDILQGHSKATMLLIANNAAQGILSSFFFKYADTILKKYSSTVATIFTGIASAVLFGHTLTMNFVIGISIVFISMHQFFSPLSKVKDEQNGVLELHDVHDKQRSKESFINMAAGANEEATHRVGHDERQPLLPS* >Glyma10g44250.4 sequence type=predicted peptide gene model=Glyma10g44250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKNGVMECSVCHSKLVSPSSKTISRAYDRHKSRISSKQRALNVFLVVGDCVLVGFQPILVYMSKVDGKFNFSPISVNFLTEITKVFFAIVMLLLQARHQKVGEKPLLSISTFMQAARNNVLLAVPALLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIALLLKVIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTTALGLPVTMGAYAYTLIFVTVPSLASVYNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILGTVVVKGPSSFDILQGHSKATMLLIANNAAQGILSSFFFKYADTILKKYSSTVATIFTGIASAVLFGHTLTMNFVIGISIVFISMHQFFSPLSKVKDEQNGVLELHDVHDKQRSKESFINMAAGANEEATHRVGHDERQPLLPS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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