Glyma10g44070 - SoyBase

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Report for Sequence Feature Glyma10g44070

Feature Type:	gene_model
Chromosome:	Gm10
Start:	50562450
stop:	50565442
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g44070

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G55005	AT	Annotation by Michelle Graham. TAIR10: tonneau 1b (TON1b) \| chr3:20384131-20386193 FORWARD LENGTH=257	SoyBase	E_val: 1.00E-122	ISS
GO:0000226	GO-bp	Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization	SoyBase	N/A	ISS
GO:0000913	GO-bp	Annotation by Michelle Graham. GO Biological Process: preprophase band assembly	SoyBase	N/A	ISS
GO:0030865	GO-bp	Annotation by Michelle Graham. GO Biological Process: cortical cytoskeleton organization	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0030981	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cortical microtubule cytoskeleton	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
PTHR15431	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR15431:SF6	Panther	gb def: Tonneau 1	JGI		ISS
UniRef100_G7IAX0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: FGFR1 oncogene partner n=1 Tax=Medicago truncatula RepID=G7IAX0_MEDTR	SoyBase	E_val: 1.00E-176	ISS
UniRef100_I1LFH2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LFH2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g44070

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g44070 not represented in the dataset	Glyma10g44070 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g44070

Paralog	Evidence	Comments
Glyma20g38790	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g44070 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g294300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g44070

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g44070

Limit To All Plant Sequences

>Glyma10g44070.2   sequence type=transcript   gene model=Glyma10g44070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGCGCACGCACATTCACAACACAACACAGAAGCGGAAAAAAGAAGAAGGAAGAAAAGTTAGCAGTAGTTTGGCGTGGTAATTGGTAGAGCGAGAAACAGAGAAATGGACGATTACACGAGGGAAATGATGGACCTGAAGACACTGGTCACTCGCACTCTCGAGAAGAAAGGCGTCCTCGCCAGGATCCGTGCCGAACTCAGGGCGAGTGTGTTCGAAGCCATCGAAGAGGAAGATCGTGTGATTGAGAAGGAACAAGGTCTACCTCCTGCATTGCTAGGTAGTTGCAACGATCGAGCTAAGCAGCTTCACGCTTCTCCTCCAGGGAGACTTCTTACGGCAATGATATGTGAATACCTTGACTGGGCGCAGCTCAGTCATACGCTAAAAGTTTATCTTCCGGAATGTAATTTGGAGAAAGATTTTTGGAAGACAGAGCTTAAGGAATTTAGTACCAAAAATGGATATGATCTCAACAGAAACAGAGATAGTCCTCTGCTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAGAATTTATCCCAAGCAAGAGCTAGTGGTAGGAGATTTGCCACCTCAGAAACTGAGCCTTTACCGAACTCAGAATCACAGAATCCCCGAAGGCATTCTTCCTCATCTGTTGCCGGTGGCTTACCTCCACTAGGAAGGGCTGTTCCTTCATCTCAGGCATCTGGTGGGTATTTCCTGTAATTGACTTTTTACCTTACATTATGCTTGAAATTTCCTATAATTTACACTCTAGCATTCAGATAGAAGAGGAGGATCCTCCATGCCTGCTTATAGGAAGGATGAGTACAATTGGCGATATGACAGTGATGAACTTCCTGAGGACATAATTCAAGCTTCAAGTGCTTTGGAAAATCTTCAATTGGACAGAAAAGCTCGGAATCTAACATCTTCTTGGCGACACGCTGGAGATGGTATCAATGAGGATGATGGCAGGGCTGATCACGTGTAGGGACAGACATCACTTGCATAATTGCAATCTGCTCCTGTATTTTACTGTGTATTCTTAATTTTCTGCCTCTGATGATGATTGAATGAGCCTAATTTGATGTAAGATCATTTAATTGTGATTTTTTTAGTTTTTTTTATGAGCTATTTTCTCTCTACAGTTTCCCTTTTTGGCTTATAGTTGAAAATTTATTGAGTTTCGATAGTTTTAGCTCATGCTTGCAAACATAAAAGCACCAAATTAAGGGCCATATATTTTTTAGCATCTAGTAAAAAATGTTTTGCGAGTGAAAGATTGAATTTAAGACCTATGTTCTATTGATTGCTTAGACGGTACGAAAGTTTACCCCCTTTTAACAATGATTGAATATGAGAACATTGAATCTTTT

>Glyma10g44070.3   sequence type=transcript   gene model=Glyma10g44070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGCGCACGCACATTCACAACACAACACAGAAGCGGAAAAAAGAAGAAGGAAGAAAAGTTAGCAGTAGTTTGGCGTGGTAATTGGTAGAGCGAGAAACAGAGAAATGGACGATTACACGAGGGAAATGATGGACCTGAAGACACTGGTCACTCGCACTCTCGAGAAGAAAGGCGTCCTCGCCAGGATCCGTGTACATACACACCTTAGGGTTTCCTCTTCCCAATTCCTCACCGTAGATCCATTCAATTCTCAACTTAGGGTTATTCTTCCGTTTTCTTTTTGTCTCAGGCCGAACTCAGGGCGAGTGTGTTCGAAGCCATCGAAGAGGAAGATCGTGTGATTGAGAAGGAACAAGGTCTACCTCCTGCATTGCTAGGTAGTTGCAACGATCGAGCTAAGCAGCTTCACGCTTCTCCTCCAGGGAGACTTCTTACGGCAATGATATGTGAATACCTTGACTGGGCGCAGCTCAGTCATACGCTAAAAGTTTATCTTCCGGAATGTAATTTGGAGAAAGATTTTTGGAAGACAGAGCTTAAGGAATTTAGTACCAAAAATGGATATGATCTCAACAGAAACAGAGATAGTCCTCTGCTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAGAATTTATCCCAAGCAAGAGCTAGTGGTAGGAGATTTGCCACCTCAGAAACTGAGCCTTTACCGAACTCAGAATCACAGAATCCCCGAAGGCATTCTTCCTCATCTGTTGCCGGTGGCTTACCTCCACTAGGAAGGGCTGTTCCTTCATCTCAGGCATCTGATAGAAGAGGAGGATCCTCCATGCCTGCTTATAGGAAGGATGAGTACAATTGGCGATATGACAGTGATGAACTTCCTGAGGACATAATTCAAGCTTCAAGTGCTTTGGAAAATCTTCAATTGGACAGAAAAGCTCGGAATCTAACATCTTCTTGGCGACACGCTGGAGATGGTATCAATGAGGATGATGGCAGGGCTGATCACGTGTAGGGACAGACATCACTTGCATAATTGCAATCTGCTCCTGTATTTTACTGTGTATTCTTAATTTTCTGCCTCTGATGATGATTGAATGAGCCTAATTTGATGTAAGATCATTTAATTGTGATTTTTTTAGTTTTTTTTATGAGCTATTTTCTCTCTACAGTTTCCCTTTTTGGCTTATAGTTGAAAATTTATTGAGTTTCGATAGTTTTAGCTCATGCTTGCAAACATAAAAGCACCAAATTAAGGGCCATATATTTTTTAGCATCTAGTAAAAAATGTTTTGCGAGTGAAAGATTGAATTTAAGACCTATGTTCTATTGATTGCTTAGACGGTACGAAAGTTTACCCCCTTTTAACAATGATTGAATATGAGAACATTGAATCTTTT

Coding sequences of Glyma10g44070

Limit To All Plant Sequences

>Glyma10g44070.1   sequence type=CDS   gene model=Glyma10g44070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGATTACACGAGGGAAATGATGGACCTGAAGACACTGGTCACTCGCACTCTCGAGAAGAAAGGCGTCCTCGCCAGGATCCGTGCCGAACTCAGGGCGAGTGTGTTCGAAGCCATCGAAGAGGAAGATCGTGTGATTGAGAAGGAACAAGGTCTACCTCCTGCATTGCTAGGTAGTTGCAACGATCGAGCTAAGCAGCTTCACGCTTCTCCTCCAGGGAGACTTCTTACGGCAATGATATGTGAATACCTTGACTGGGCGCAGCTCAGTCATACGCTAAAAGTTTATCTTCCGGAATGTAATTTGGAGAAAGATTTTTGGAAGACAGAGCTTAAGGAATTTAGTACCAAAAATGGATATGATCTCAACAGAAACAGAGATAGTCCTCTGCTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAGAATTTATCCCAAGCAAGAGCTAGTGGTAGGAGATTTGCCACCTCAGAAACTGAGCCTTTACCGAACTCAGAATCACAGAATCCCCGAAGGCATTCTTCCTCATCTGTTGCCGGTGGCTTACCTCCACTAGGAAGGGCTGTTCCTTCATCTCAGGCATCTGATAGAAGAGGAGGATCCTCCATGCCTGCTTATAGGAAGGATGAGTACAATTGGCGATATGACAGTGATGAACTTCCTGAGGACATAATTCAAGCTTCAAGTGCTTTGGAAAATCTTCAATTGGACAGAAAAGCTCGGAATCTAACATCTTCTTGGCGACACGCTGGAGATGGTATCAATGAGGATGATGGCAGGGCTGATCACGTGTAG

>Glyma10g44070.2   sequence type=CDS   gene model=Glyma10g44070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGATTACACGAGGGAAATGATGGACCTGAAGACACTGGTCACTCGCACTCTCGAGAAGAAAGGCGTCCTCGCCAGGATCCGTGCCGAACTCAGGGCGAGTGTGTTCGAAGCCATCGAAGAGGAAGATCGTGTGATTGAGAAGGAACAAGGTCTACCTCCTGCATTGCTAGGTAGTTGCAACGATCGAGCTAAGCAGCTTCACGCTTCTCCTCCAGGGAGACTTCTTACGGCAATGATATGTGAATACCTTGACTGGGCGCAGCTCAGTCATACGCTAAAAGTTTATCTTCCGGAATGTAATTTGGAGAAAGATTTTTGGAAGACAGAGCTTAAGGAATTTAGTACCAAAAATGGATATGATCTCAACAGAAACAGAGATAGTCCTCTGCTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAGAATTTATCCCAAGCAAGAGCTAGTGGTAGGAGATTTGCCACCTCAGAAACTGAGCCTTTACCGAACTCAGAATCACAGAATCCCCGAAGGCATTCTTCCTCATCTGTTGCCGGTGGCTTACCTCCACTAGGAAGGGCTGTTCCTTCATCTCAGGCATCTGGTGGGTATTTCCTGTAA

>Glyma10g44070.3   sequence type=CDS   gene model=Glyma10g44070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATATGTGAATACCTTGACTGGGCGCAGCTCAGTCATACGCTAAAAGTTTATCTTCCGGAATGTAATTTGGAGAAAGATTTTTGGAAGACAGAGCTTAAGGAATTTAGTACCAAAAATGGATATGATCTCAACAGAAACAGAGATAGTCCTCTGCTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAGAATTTATCCCAAGCAAGAGCTAGTGGTAGGAGATTTGCCACCTCAGAAACTGAGCCTTTACCGAACTCAGAATCACAGAATCCCCGAAGGCATTCTTCCTCATCTGTTGCCGGTGGCTTACCTCCACTAGGAAGGGCTGTTCCTTCATCTCAGGCATCTGATAGAAGAGGAGGATCCTCCATGCCTGCTTATAGGAAGGATGAGTACAATTGGCGATATGACAGTGATGAACTTCCTGAGGACATAATTCAAGCTTCAAGTGCTTTGGAAAATCTTCAATTGGACAGAAAAGCTCGGAATCTAACATCTTCTTGGCGACACGCTGGAGATGGTATCAATGAGGATGATGGCAGGGCTGATCACGTGTAG

Predicted protein sequences of Glyma10g44070

Limit To All Plant Sequences

>Glyma10g44070.1   sequence type=predicted peptide   gene model=Glyma10g44070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDDYTREMMDLKTLVTRTLEKKGVLARIRAELRASVFEAIEEEDRVIEKEQGLPPALLGSCNDRAKQLHASPPGRLLTAMICEYLDWAQLSHTLKVYLPECNLEKDFWKTELKEFSTKNGYDLNRNRDSPLLLDVLEGFLKLENLSQARASGRRFATSETEPLPNSESQNPRRHSSSSVAGGLPPLGRAVPSSQASDRRGGSSMPAYRKDEYNWRYDSDELPEDIIQASSALENLQLDRKARNLTSSWRHAGDGINEDDGRADHV*

>Glyma10g44070.2   sequence type=predicted peptide   gene model=Glyma10g44070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDDYTREMMDLKTLVTRTLEKKGVLARIRAELRASVFEAIEEEDRVIEKEQGLPPALLGSCNDRAKQLHASPPGRLLTAMICEYLDWAQLSHTLKVYLPECNLEKDFWKTELKEFSTKNGYDLNRNRDSPLLLDVLEGFLKLENLSQARASGRRFATSETEPLPNSESQNPRRHSSSSVAGGLPPLGRAVPSSQASGGYFL*

>Glyma10g44070.3   sequence type=predicted peptide   gene model=Glyma10g44070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MICEYLDWAQLSHTLKVYLPECNLEKDFWKTELKEFSTKNGYDLNRNRDSPLLLDVLEGFLKLENLSQARASGRRFATSETEPLPNSESQNPRRHSSSSVAGGLPPLGRAVPSSQASDRRGGSSMPAYRKDEYNWRYDSDELPEDIIQASSALENLQLDRKARNLTSSWRHAGDGINEDDGRADHV*

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